LOC110494512 (LOC106565824)


Basic Information

Item Value
gene id LOC110494512
gene name LOC106565824
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72601325 ~ 72612798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950583.1
CTTTCCAAGCTACACTTCTCATGATACGGTTGTGTCACATCGATCACATTAACCTTTACGTAATGTCAACATGAATGGGCAATctgtgtaatcattagtccaaacaatTTTTGCAACgaaaatgagagtttctattggacaaattcaGGTATATGCCATCCGCCAATACACCTTTAAACTGGTCTACTACTATGGCGGTTAGTGGGGTGAGTCGTCTTTCCCAACCCGGGGACGTGGCTGTCTCGGGAGTGGTTCTGTCAGCTATGCCTTTTTCCAACACGCCAGTGTCTGCCCGCCCCACACCAAATGCGGACACCCGTGGCTGCGAGAATGGTGACTTGATGGACTCTTTTGGCATCTTCCTGCAAGGCCTTCTAGCGATGGTGGCCTTCAGTACGCTGATGTTGAAGCGCTTCAGGGAGCCCAAGCATGAGAGAAGGCCCTGGAGGATCTGGTTCCTGGACACCTCCAAACAGGCCATTGGTATGCTATTCATTCACTTTGCCAACGTCTACCTGTCTGACCTCACAGAGGAGGACCCCTGCTCACTTTACCTCATTAACTTCCTCCTGGATGCGTCTCTTGGAATGCTGCTGATCTATGCCGGGGTGAGGGCCATCAGTGCTATCGTAGAGTGGAGGCAGTGGGATGCTCTACGCTTCGGAGAATatgGAGAACCAGTGCAGTGTACTGCATGGGCAGGCCAGTGTGCTCTCTACATCCTTATCATGATGTTTGAGAAGGTCCTGATCATCCTGGTCCTACTCATCCCCCAGTGGAAGAAGCTGGCTCTCCTGAACCCCATAAACAACCCTCAGTTGGAGCTGGCCATCGTCATGCTCATCGTCCCGTTCTTCGTTAATGCCCTGATGTTTTGGGTGGTAGATAACTTCCTGATGAAGAAGGGGCGGACAAAAGCCAAGCTGGAGGAGCGGGAGGTGGGGGAGGACTTGCGGGGCAACAGTAAGGTACGCTACAGGCGGGCACTCTCCCACGACGACTCAGAGTCTGAGatcctGTTCTCGGCTGACGATGAGATGGATGACTCGGAGGAGGAGGATGTGCGCCGACTCACTGGCCTCAAGACggtcaagaagaagaagaagcaccgTATGGGGATCCCTGTTTGACCTGGGCCTACCCAGTCTGACCTGGTCTGACCCACTCCTGTGTCTACTCAcatccccactctctcctcctccagggccTGCTGCCCTGACTGGAGCCTGCTGGCAACCTGTACTTGATTCTTCTAACAGCAGGCTGGCATTGGTCTCTTTGTGGAGTCAGTAGGGGGCCTATATAGGGAGGTGGGATCATGGAAGACTCCAGACCACGGAGCTTATTGGACTGTCATTACTACACATCCACATGGGACTCCTGCAGCCTCTGCACTGAGAATAGAAACCCATGGAAAGGATTTCACTGCAGCTAACTACATACCATGTCTAAAGGAGATTTCACCATAgatctgtcactggtgtttcagTGATGCTCGTTGGGGAAATGAATCTTGATATGTGTTTTGGGAAAACTTTTAGCACTGGTCTGTAATAGGAAGGTTTGGGTGTGTTTTGAGTTGGTGATGCAGTGTAATTGCTAGCACCCTAAATATCCTATTAAATGactattctaattcctaattctgtTCCATACTGACTCTTCAGAAGTCCAGAATGATATTACTGCATCAGGTTAAACTGTGAATGGGTGTTACTTTTTCTGTGGTTTAGCCGGTGACCTCGGTTCGATGTAGACTGAGAGAACAGGCACCTGGTATTgaactcagcccccccccccccccccccccgcctttaAGTAAACCTCTGTCATTTTAATGTTTTAATACTTTTGATACTCTTCCGAATCAGAAAGTGATTGTATTCCTCATCTAGATTCCATATAAGAAATGGCTGACTGCTATGGCCTGTTATAGGAGTtggtggaggagtgtgtgtgtgtctgtctgtgtggactTTTCCATTCATGCATGGCTAAGGGAATGTAGGAGGTGTGGCTTGATGCTCCAATGGAGGCTCTGTGAAGATCAAGACGGTGCAGCTTGGGCGTGTGTCTCCACAATGCATCACCCAACCCGAACCCAAGGGACTGAAACCCTCATTTCAAGCCCACCCATTGACCGTTTAGGTCTATAGGCCTGGCTCGGAgccttctcttcctgtctctgtgtatGAAAGTTAACTGGGATCTCTTCCATTACTTATTTATTGTTTTTGGTGTGTCCTGTTTATTTTTTACAGTAAGTTATTTTGGGCCAAAACCATGATGATCCCCAGCCTACTAAGTGTTTTTCATTCCGAGACGGAGTAGATATGGGACCTGAGGGTGTGTCCTCACAACCAACGGGAAAAAAACTCTCCGCTCTTGCACAATTCCCAGTTATCACTGGTCTATGGATGTTCTTTGTGTTCATTCTTTGTTTTCGACAATGTGCCTATGTGAACTTACCATGTTTGTGAGTGTTCATTTTGTGACCCAGAGCTTTAGACTTGCAGTAGCATTCAGTTGTTTTGACAGAAGCACAGACCTAGAGTTTGAGTGACTAGGTCAGCCTGCAGTACAGTGCAGGTATGTTTGTATGAGTGTGTTTGTCTTAATGCTCCTGTTCAAAGTAAGGAGTGGGGATAAAGTAAATGTGTTGATGACCATGGTGCTGAAGATGTTGAACGGTTTGACAATGATTGTTGTTGGCTGATACTTAGGAATAAATGACAGTAGGGTTTGGTAAATGAGTGGTACAGCATCATTAAACACTTCTGGTTGCCCTCTGCTCAACAGAGAGGGCTTTTAGTGTTTTGAAAAAAACAACTAGATCATTAAAATGACTGACAAATGACTTACATTACCATTATATTTGCTTTTGCAATAAATTTAGTAAAACACTGAAA
>XM_021569644.2
gttttgcaacagaattggcGTAATGAATATTCCAATGGGCTTTGGTCTGGGCACAGAAAGGATGCAGCTGGAAATTCCAGTGGTAGCTAGTAGCGATGTACTCTGATCATTGAGCAAATTATTGGTCGTTCCCATGTTTTGTGCAAAacagattttttaaatgaaaaagtAGCAAATCCGAAATCGTGAGAATATCAATATCATGCTTTTCATACATGCACAAGGGATCCATTGCAATTACTTGAACCAGATTAGCTAGCTAAGCTACCGGTACCGTTAGCATCACTTGTTCTGGTAGGCTGGTGGTTTGTGGTTTTTATATAATTTAATTCGTCACAGGGTAAAACAGTGGTGTTTACTCAAGTAGCTTGCTTCCACTTTTTAAAACGTTTAAGTGGTACATAACTAGGTGAAACTATCTTCATTTGCTAACCCTCTCGCGCACCGCTAAAAGGGTTAGGAACTCTGCTGAAATAACATGAAGTTAGAACATGCCTTGGGATGACTCATTTTGGAACTTTGTTGCAAATGTTTCCGTTAGTAAACATTGCGTCGTCACGTATTTAATTGTTATATGCGTTGTCCATGATTGCCTGCTGTGTAGCTAGTTATGTTCGTTAGCTATCGATAGCTAATTTATGCAAACTACAGCTTGGATTTTAATTTGTTAGTAAACCAATAATATGTTAGTTAAATGAGTATGACATGCATGGTATGCCGTTCTTTTGTGGCTATTTGGTGATACAATGGATTATCAACAACTGGGATATGTTTGCTAACGCTGGCCACATGAAACGTGAATATATGGCTCCGCAGTTAAAAGGAAGATAACCTTTTTTTAATGCCAAATACTCCTGCATAACTAATCGATTGCCAGCTAACAACTGGATGACAAAGAAGCCCATTCTGTGTGGAGGAGACATTTAAATTGACTTTATTGCTTATTTACGGTATATGCCATCCGCCAATACACCTTTAAACTGGTCTACTACTATGGCGGTTAGTGGGGTGAGTCGTCTTTCCCAACCCGGGGACGTGGCTGTCTCGGGAGTGGTTCTGTCAGCTATGCCTTTTTCCAACACGCCAGTGTCTGCCCGCCCCACACCAAATGCGGACACCCGTGGCTGCGAGAATGGTGACTTGATGGACTCTTTTGGCATCTTCCTGCAAGGCCTTCTAGCGATGGTGGCCTTCAGTACGCTGATGTTGAAGCGCTTCAGGGAGCCCAAGCATGAGAGAAGGCCCTGGAGGATCTGGTTCCTGGACACCTCCAAACAGGCCATTGGTATGCTATTCATTCACTTTGCCAACGTCTACCTGTCTGACCTCACAGAGGAGGACCCCTGCTCACTTTACCTCATTAACTTCCTCCTGGATGCGTCTCTTGGAATGCTGCTGATCTATGCCGGGGTGAGGGCCATCAGTGCTATCGTAGAGTGGAGGCAGTGGGATGCTCTACGCTTCGGAGAATatgGAGAACCAGTGCAGTGTACTGCATGGGCAGGCCAGTGTGCTCTCTACATCCTTATCATGATGTTTGAGAAGGTCCTGATCATCCTGGTCCTACTCATCCCCCAGTGGAAGAAGCTGGCTCTCCTGAACCCCATAAACAACCCTCAGTTGGAGCTGGCCATCGTCATGCTCATCGTCCCGTTCTTCGTTAATGCCCTGATGTTTTGGGTGGTAGATAACTTCCTGATGAAGAAGGGGCGGACAAAAGCCAAGCTGGAGGAGCGGGAGGTGGGGGAGGACTTGCGGGGCAACAGTAAGatcctGTTCTCGGCTGACGATGAGATGGATGACTCGGAGGAGGAGGATGTGCGCCGACTCACTGGCCTCAAGACggtcaagaagaagaagaagcaccgTATGGGGATCCCTGTTTGACCTGGGCCTACCCAGTCTGA
>XM_021569643.2
tttgcaacagaattggcGTAATGAATATTCCAATGGGCTTTGGTCTGGGCACAGAAAGGATGCAGCTGGAAATTCCAGTGGTAGCTAGTAGCGATGTACTCTGATCATTGAGCAAATTATTGGTCGTTCCCATGTTTTGTGCAAAacagattttttaaatgaaaaagtAGCAAATCCGAAATCGTGAGAATATCAATATCATGCTTTTCATACATGCACAAGGGATCCATTGCAATTACTTGAACCAGATTAGCTAGCTAAGCTACCGGTACCGTTAGCATCACTTGTTCTGGTAGGCTGGTGGTTTGTGGTTTTTATATAATTTAATTCGTCACAGGGTAAAACAGTGGTGTTTACTCAAGTAGCTTGCTTCCACTTTTTAAAACGTTTAAGTGGTACATAACTAGGTGAAACTATCTTCATTTGCTAACCCTCTCGCGCACCGCTAAAAGGGTTAGGAACTCTGCTGAAATAACATGAAGTTAGAACATGCCTTGGGATGACTCATTTTGGAACTTTGTTGCAAATGTTTCCGTTAGTAAACATTGCGTCGTCACGTATTTAATTGTTATATGCGTTGTCCATGATTGCCTGCTGTGTAGCTAGTTATGTTCGTTAGCTATCGATAGCTAATTTATGCAAACTACAGCTTGGATTTTAATTTGTTAGTAAACCAATAATATGTTAGTTAAATGAGTATGACATGCATGGTATGCCGTTCTTTTGTGGCTATTTGGTGATACAATGGATTATCAACAACTGGGATATGTTTGCTAACGCTGGCCACATGAAACGTGAATATATGGCTCCGCAGTTAAAAGGAAGATAACCTTTTTTTAATGCCAAATACTCCTGCATAACTAATCGATTGCCAGCTAACAACTGGATGACAAAGAAGCCCATTCTGTGTGGAGGAGACATTTAAATTGACTTTATTGCTTATTTACGGTATATGCCATCCGCCAATACACCTTTAAACTGGTCTACTACTATGGCGGTTAGTGGGGTGAGTCGTCTTTCCCAACCCGGGGACGTGGCTGTCTCGGGAGTGGTTCTGTCAGCTATGCCTTTTTCCAACACGCCAGTGTCTGCCCGCCCCACACCAAATGCGGACACCCGTGGCTGCGAGAATGGTGACTTGATGGACTCTTTTGGCATCTTCCTGCAAGGCCTTCTAGCGATGGTGGCCTTCAGTACGCTGATGTTGAAGCGCTTCAGGGAGCCCAAGCATGAGAGAAGGCCCTGGAGGATCTGGTTCCTGGACACCTCCAAACAGGCCATTGGTATGCTATTCATTCACTTTGCCAACGTCTACCTGTCTGACCTCACAGAGGAGGACCCCTGCTCACTTTACCTCATTAACTTCCTCCTGGATGCGTCTCTTGGAATGCTGCTGATCTATGCCGGGGTGAGGGCCATCAGTGCTATCGTAGAGTGGAGGCAGTGGGATGCTCTACGCTTCGGAGAATatgGAGAACCAGTGCAGTGTACTGCATGGGCAGGCCAGTGTGCTCTCTACATCCTTATCATGATGTTTGAGAAGGTCCTGATCATCCTGGTCCTACTCATCCCCCAGTGGAAGAAGCTGGCTCTCCTGAACCCCATAAACAACCCTCAGTTGGAGCTGGCCATCGTCATGCTCATCGTCCCGTTCTTCGTTAATGCCCTGATGTTTTGGGTGGTAGATAACTTCCTGATGAAGAAGGGGCGGACAAAAGCCAAGCTGGAGGAGCGGGAGGTGGGGGAGGACTTGCGGGGCAACAGTAAGGTACGCTACAGGCGGGCACTCTCCCACGACGACTCAGAGTCTGAGatcctGTTCTCGGCTGACGATGAGATGGATGACTCGGAGGAGGAGGATGTGCGCCGACTCACTGGCCTCAAGACggtcaagaagaagaagaagcaccgTATGGGGATCCCTGTTTGACCTGGGCCTACCCAGTCTGACCTGGTCTGACCCACTCCTGTGTCTACTCAcatccccactctctcctcctccagggccTGCTGCCCTGACTGGAGCCTGCTGGCAACCTGTACTTGATTCTTCTAACAGCAGGCTGGCATTGGTCTCTTTGTGGAGTCAGTAGGGGGCCTATATAGGGAGGTGGGATCATGGAAGACTCCAGACCACGGAGCTTATTGGACTGTCATTACTACACATCCACATGGGACTCCTGCAGCCTCTGCACTGAGAATAGAAACCCATGGAAAGGATTTCACTGCAGCTAACTACATACCATGTCTAAAGGAGATTTCACCATAgatctgtcactggtgtttcagTGATGCTCGTTGGGGAAATGAATCTTGATATGTGTTTTGGGAAAACTTTTAGCACTGGTCTGTAATAGGAAGGTTTGGGTGTGTTTTGAGTTGGTGATGCAGTGTAATTGCTAGCACCCTAAATATCCTATTAAATGactattctaattcctaattctgtTCCATACTGACTCTTCAGAAGTCCAGAATGATATTACTGCATCAGGTTAAACTGTGAATGGGTGTTACTTTTTCTGTGGTTTAGCCGGTGACCTCGGTTCGATGTAGACTGAGAGAACAGGCACCTGGTATTgaactcagcccccccccccccccccccccgcctttaAGTAAACCTCTGTCATTTTAATGTTTTAATACTTTTGATACTCTTCCGAATCAGAAAGTGATTGTATTCCTCATCTAGATTCCATATAAGAAATGGCTGACTGCTATGGCCTGTTATAGGAGTtggtggaggagtgtgtgtgtgtctgtctgtgtggactTTTCCATTCATGCATGGCTAAGGGAATGTAGGAGGTGTGGCTTGATGCTCCAATGGAGGCTCTGTGAAGATCAAGACGGTGCAGCTTGGGCGTGTGTCTCCACAATGCATCACCCAACCCGAACCCAAGGGACTGAAACCCTCATTTCAAGCCCACCCATTGACCGTTTAGGTCTATAGGCCTGGCTCGGAgccttctcttcctgtctctgtgtatGAAAGTTAACTGGGATCTCTTCCATTACTTATTTATTGTTTTTGGTGTGTCCTGTTTATTTTTTACAGTAAGTTATTTTGGGCCAAAACCATGATGATCCCCAGCCTACTAAGTGTTTTTCATTCCGAGACGGAGTAGATATGGGACCTGAGGGTGTGTCCTCACAACCAACGGGAAAAAAACTCTCCGCTCTTGCACAATTCCCAGTTATCACTGGTCTATGGATGTTCTTTGTGTTCATTCTTTGTTTTCGACAATGTGCCTATGTGAACTTACCATGTTTGTGAGTGTTCATTTTGTGACCCAGAGCTTTAGACTTGCAGTAGCATTCAGTTGTTTTGACAGAAGCACAGACCTAGAGTTTGAGTGACTAGGTCAGCCTGCAGTACAGTGCAGGTATGTTTGTATGAGTGTGTTTGTCTTAATGCTCCTGTTCAAAGTAAGGAGTGGGGATAAAGTAAATGTGTTGATGACCATGGTGCTGAAGATGTTGAACGGTTTGACAATGATTGTTGTTGGCTGATACTTAGGAATAAATGACAGTAGGGTTTGGTAAATGAGTGGTACAGCATCATTAAACACTTCTGGTTGCCCTCTGCTCAACAGAGAGGGCTTTTAGTGTTTTGAAAAAAACAACTAGATCATTAAAATGACTGACAAATGACTTACATTACCATTATATTTGCTTTTGCAATAAATTTAGTAAAACACTGAAA

Function

NR:

description
PREDICTED: transmembrane protein 110-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950583.1 False 2909 mRNA 0.47 9 72601325 72612798
XM_021569644.2 False 1907 mRNA 0.46 8 72601518 72611039
XM_021569643.2 True 3709 mRNA 0.45 8 72601520 72612798

Neighbor

gene id symbol gene type direction distance location
LOC110494510 LOC106565827 coding upstream 16167 72547152 ~ 72585158 (+)
LOC110494508 LOC106565828 coding upstream 77558 72453359 ~ 72523767 (+)
LOC110494505 LOC102209545 coding upstream 381251 71979900 ~ 72221849 (+)
LOC118940657 NA coding upstream 898624 71702645 ~ 71702701 (+)
LOC110493246 LOC106565837 coding upstream 912670 71678389 ~ 71688655 (+)
LOC110494513 LOC106565822 coding downstream 17524 72630322 ~ 72639097 (+)
LOC110494516 LOC105017315 coding downstream 205370 72818168 ~ 72828562 (+)
LOC110494520 LOC106565815 coding downstream 249561 72862359 ~ 72864606 (+)
LOC110494525 LOC106565811 coding downstream 431548 73044346 ~ 73049958 (+)
LOC110494536 LOC106565804 coding downstream 754004 73366802 ~ 73384379 (+)
G1484943 NA non-coding upstream 56882 72544161 ~ 72544443 (+)
G1484896 NA non-coding upstream 147169 72453953 ~ 72454156 (+)
G1484886 NA non-coding upstream 156602 72444508 ~ 72444723 (+)
G1484872 NA non-coding upstream 175765 72425316 ~ 72425560 (+)
G1484855 NA non-coding upstream 196118 72404800 ~ 72405207 (+)
G1484985 NA non-coding downstream 47208 72660006 ~ 72675667 (+)
G1485006 NA non-coding downstream 76846 72689644 ~ 72693477 (+)
G1485065 NA non-coding downstream 177273 72790071 ~ 72790947 (+)
G1485070 NA non-coding downstream 185097 72797895 ~ 72798215 (+)
G1485023 LOC106565817 non-coding downstream 234071 72846869 ~ 72852122 (+)
G1484897 NA other upstream 146401 72454563 ~ 72454924 (+)
G1484782 NA other upstream 295913 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1219053 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1420896 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 1760095 70809971 ~ 70847390 (+)
G1485260 NA other downstream 510028 73122826 ~ 73125356 (+)
G1485819 NA other downstream 668462 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1366092 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1775738 74388428 ~ 74432420 (+)

Expression


Co-expression Network