LOC110494513 (LOC106565822)


Basic Information

Item Value
gene id LOC110494513
gene name LOC106565822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72630322 ~ 72639097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950584.1
CACTTCGTCTGTCACTCCTGTAAGTGGAGCAGTAGGGTAGGAAAGGGTTGTCGTTTTCTAAGCAGTGAAGTCAGTGTTCAGCTGCATCTTTGTCATGTCTGGAGTGtggactgtgctgctgctctggGGCGTTGTCTTTGTCCCGGCTCTGTTGCATGGAGCTCTGGTCATCTCACGAGAAGGCTCCACACCACAGCGCTCTGATGGTGCTACAAGGCTACTAAAGaaaagaAGTACAGATAATATGGAGgtggAGGTGTACAGTGTAAAGGTGGCCTGTAAGGTGGCGTCTCGTTTCGCTCACACGGTCATAACCTCCAGTGCTCTGAACAAGGCCAACTCCTCTCAGGAAGTATTCTTTGAGGTGGATCTGCCCAAGACTGCCTTCATCACCAACTTCAGCATGGAGATAGAGGGTCAGACGTACACGGGCGaggtgaaggagaaggagaaagccAAGAAGCAGTATCAGAAAGCTGTTTCCACAGGGCAGACTGCAGGACTGGTCAAGGCATCAGGGAGGAAGATGGAGAAGTTTTCGGTGTCTGTGAACATCGCGGCCAATAGTAACGTCACCTTCATTCTGACATACGAGGAGTTGCTTCAGCGTAAACTGGGCCAGTATGAGATCATGACCCAGGTCAAACCCAAGCAGCTGGTCCAGCACTTTGAGATTGTGGCAGATATCTATGAACCCCAGGGCATTGCCTTCCTGGAGGCCTATGGAACCTTCATCTCCAACGAGCTTCTCCCTCTGGTGGAGAAAACAGTCACTGACAAAAAGGCACACATCTCTTTCTGCCCAACAATGGACCAGCAGAGAAAGTGCCCAGGTTGTGACGGCACCCTGATTGACGGGGATTTCTTTATCAAATATGACGTGAACCGAGCTGAGACCCTTGGTGACATCCAGATAGTGAATGGGTACTTTGTGCACTTCTTTGCTCCTCCGGACTTACCCAGAGTTCCAAAGAATGTAGTGTTCGTCATTGACAGGAGTGGGTCAATGTCTGGAAACAAAATTCATCAGACAAGGGAAGCTATGCTGACTATCCTGAATGACCTGCATGAGGACGACTACTTTGGAATTGTCACATTTGACCACCATATCTCAACATGGAAGGACTCTTTGACCAAGGCCACCACGGGAAATGTGTCTGAAGCCAAAGGATTTGTCAAAGGAATATATCAAAGTGGATACACTGATATAAATGGTGCTCTGATGAAAGCTGTGGACATAATGATGAAAGACAAACAAGCCAAGAAGTTCACAGAGAGGAGTGTGTCTATGATTATCTTACTGACAGATGGAATGCCAAACTCAGgaGTGTCATCTACACCACAGATTCAGGAGAATGTCCGTGATGCGATGGGTGGGAACatgtctctgttctgtctggGCTTTGGGAATGATGTGGACTACTCCTTTCTGGATGTGATGTCTAGACAGAACCAGGGACTGGCCCGGAGGATCTACGAGGGTTCTGACGCCACTGTCCAGCTTCAGGGTTTCTATGAGGAAGTAGCCAGCCCCCTCCTCTCTGAGGTGGACCTGCATTACCCTGACAACCTGGTGAACTCTCTGACCACCAGCCACTACAAGCAGCTGTTCAACGGCTCAGAGATCGTGGTAGCTGGCCGGCTCACTGATAATAGCTTGGATAACTTCCTCGTGGAGGTGTTTGCAAAGGGgTATGAGGAGGACTTTATTGTCAAAGGCCAGGCTAGTGCCCAAGAGTGGGACATACTGTACCCTGAGCAGGAGTACATATTTGGGGACTTCACTGAGCGTCTTTGGGCCTACCTCACCATCCAACAACTGTTGAGCAAGAAAGAGACTGGAACTGCAGAAGAGAAGGGGAATGCCACTGCCCAGGCTCTGGAGATGTCCCTGCAGTACAGCTTTGTCACCCCTCTTACCTCCATGGTGGTCACCAAGCCTAAGACTGAAGAGGAGCAAGAGGAACCCCTCATCGCGGACAAGCTGACCGAGGATGAAAGGCAAAACGCCCAGAGATTGGGTCATTTTGTACCCCAGACGGTGAGCAACACCTACAGGGTGCAGAGCAGGCCCACATACTTTGTGGATGGAGACCCTCATTTCATGATTGAGTTGCCAGAACAGGAGGATGCACTGTGCTTCAACATAGACGACAGGCCTGGTACCATCTTCAACCTAGTGAGAGATCAGCTTGCAGGTGTTTTGGTCAATGGCCAGACCATTGGGGACAAGAAGGTGGCCCCTGATGGCAAAGTGAACACCTACTTTGGTCGCTTTGGCATTGTTCACCAGGGGCTGGGGGTGAGACTGGAGGTGACTACTCATGACATCACTGTGTCCCAGAATGGCAAGCAGGCCAAACTCTTCTGGTCTGACACCGCCTCTCTCAAGGGAGCCAATTTAGACCTGCAGGTGACCAAAGACCGCAGCTTGACTGTCACCCTCAGGGACTCGGTCCGGTTTGTGGTCATCCTACACAAGGTGTGGAAACAGCACCCCTACCACCAGGACTATCTGGGCTTCTATACCCTGGACAGCCACCTCTTATCCCCCAGCGTCCACGGCCTTCTAGGTCAGTTTTACCATGGGGTGCAGTTTGAGGTGAGAGACATGCGCCCAGGGGAGGAGCCAGAGAAACCAGATGCCACCATGCTAGTGAAGGGGCAGGAGCTTACAGTGACAAGGGGCTGGCAGAGGGACTTCAGCTGGGATGTGAAGAATGGAGAGAACGTCCCCTGCTGGTTCATCCATAGCAACGGCAACGGCCTCATCGATGGAAACCACACAGATTACATCATGTCTGGACTCTTCAAGACTGTCTGAGTCTGGTACACTAGCAGTCAACCTCCTCAAACAGTACACACAATATATCAGTCACACGTTTCACATGGATTCAACACACTGTATGTGCTATAGACATACCATCATGACATGAGAATAATTCATAGATAATGTAAGATACAATCAGACCGAAGTACATTTGGTTAAAAGATAAGTGGCAAGATAGAGAACTGCTGTCAAATACATTCAATGTTTTCATATTGATATGGGATAGTGCTGACAAAAACCTGTTGAAATAAATGGTCCCACTTCCACCTAA

Function

NR:

description
inter-alpha-trypsin inhibitor heavy chain H3-like

GO: NA

KEGG:

id description
K24513 ITIH3, SHAP; inter-alpha-trypsin inhibitor heavy chain H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950584.1 True 3101 mRNA 0.50 22 72630322 72639097

Neighbor

gene id symbol gene type direction distance location
LOC110494511 LOC106565826 coding upstream 9025 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding upstream 17524 72601325 ~ 72612798 (+)
LOC110494510 LOC106565827 coding upstream 45164 72547152 ~ 72585158 (+)
LOC110494508 LOC106565828 coding upstream 106555 72453359 ~ 72523767 (+)
LOC110494505 LOC102209545 coding upstream 410248 71979900 ~ 72221849 (+)
LOC110494516 LOC105017315 coding downstream 179071 72818168 ~ 72828562 (+)
LOC110494520 LOC106565815 coding downstream 223262 72862359 ~ 72864606 (+)
LOC110494525 LOC106565811 coding downstream 405249 73044346 ~ 73049958 (+)
LOC110494536 LOC106565804 coding downstream 727705 73366802 ~ 73384379 (+)
LOC110494537 LOC106565802 coding downstream 756643 73395740 ~ 73416687 (+)
G1484943 NA non-coding upstream 85879 72544161 ~ 72544443 (+)
G1484896 NA non-coding upstream 176166 72453953 ~ 72454156 (+)
G1484886 NA non-coding upstream 185599 72444508 ~ 72444723 (+)
G1484872 NA non-coding upstream 204762 72425316 ~ 72425560 (+)
G1484855 NA non-coding upstream 225115 72404800 ~ 72405207 (+)
G1484985 NA non-coding downstream 20909 72660006 ~ 72675667 (+)
G1485006 NA non-coding downstream 50547 72689644 ~ 72693477 (+)
G1485065 NA non-coding downstream 150974 72790071 ~ 72790947 (+)
G1485070 NA non-coding downstream 158798 72797895 ~ 72798215 (+)
G1485023 LOC106565817 non-coding downstream 207772 72846869 ~ 72852122 (+)
G1484897 NA other upstream 175398 72454563 ~ 72454924 (+)
G1484782 NA other upstream 324910 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1248050 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1449893 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 1789092 70809971 ~ 70847390 (+)
G1485260 NA other downstream 483729 73122826 ~ 73125356 (+)
G1485819 NA other downstream 642163 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1339793 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1749439 74388428 ~ 74432420 (+)

Expression


Co-expression Network