LOC110494516 (LOC105017315)



Basic Information


Item Value
gene id LOC110494516
gene name LOC105017315
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72818168 ~ 72828562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021569648.2
TGACGTCGAAGATTGCTGACTCAGAGGATGTTTTGGAGGAAGTgacaagagactgaaaagaaaaAGAAATAGGCCCTCTTCAAGTATACCTACAGGGATTCCTCTTGCTTAATACTTTATCTTACTTTGGAAACACAGGTGGCTTACCTACTAGTATTGAAAGTATATATTGCATATCATTAAACAGACGTGCGTTCTGACAGCAACGTTACCACACCACTAACTAGCAAACGAACGTTAGGTTgttgggtggggggggtgggtcGTCTGTTTTTCATCTAGTTAGACGAAAGACCCATTTGGACATTCCTTAACATTCcttccctgtgtttgggttgaTCAAGCTGTGGCACAATGACGTCTAGGAAGAAAGTACTACTGAAAGTCATCATCCTGGGAGACTCTGGAGTTGGGAAGACGTCGCTGATGAACCAGTATGTGAATAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCTGATTTCCTAACGAAAGAAGTGATGGTGGATGACAGACTTGTCACCATGCAGATCTGGGACACTGCAGGGCAGGAGAGGTTCCAGTCTCTGGGTGTAGCGTTCTACCGCGGGGCAGACTGCTGTGTGCTGGTGTTTGACGTGACTGCCCCCAACACCTTTAAGACGCTAGACAGCTGGAGGGACGAGTTCCTTATACAGGCCAGCCCCCGAGATCCCGAGAACTTCCCCTTTGTGGTGCTAGGCAACAAGATTGACTTGGAGAACAGACAGGTGACGACCAAACGAGCACAGGCGTGGTGTCAGAGCAAGAACAACATCCCCTACTTTGAGACCAGCGCTAAGGAGGCCATCAACGTTGAACAGGCTTTCCAGACTATCGCACGCAATGCTCTTAAACAGGAGACAGAGGTGGAGTTGTACAATGAGTTCCCTGAACCGATAAAGCTGGACAGGAACGAACGGGCCAAGCCATCAGCGGAGGCCTGCAGCTGCTGAGGACCTAGGAGACCTACAGGGGACAACTGTTTGCCCTGCTACTCTGTCTTGCCTTGTCTACCCTTTATCCCACATGCCCCTGTGTGCTCTCCTCTGCCCAATATCATCACTGGCCTTCGTAGATGCAAGCAGAGTTCCGCTCGTAAAGtatactttacacacacacacacacacacacacacactggactcatcCCTGTGTACACATCACACATTTACTCTCAAGATGAGTTTCCAAGCCCAAAGAACACCCAGATGGATATTAGAGCATTTAACAGCATATCTGCTTATTATTTCCCCTTAACCTGTCTCTTTAGATGCCATTGTTTCCATGGCACCAGCCTCATAACATTTTATAAGGGGGGGTTAGATGTAGTTCACTCCCAAAGTTCCAGTGGTGAGTCATATCAATGGTATGTGGGGGTTATACCAATGTACTGCCTAAAGATACATGTGTTAATTTGATTGGATGTAAACTAGCAAATCCAACATACAAGTGTGTTTAAGGCATATTTTGCACTTTGTTGTCATGTAGGCTTATTCAAACCCTATTTGACACCTTATTTTGGAGCCACAATAAAcactttttaatttatttttttagctCAAGGCAGAAGAGGCAATATGGATTTTAACTCTGCTCTCCAACTTCCATGATGTCCTCAACTGCCCTACACATTGTTTCTCAATGGGGGAAAAGTCAAGCGGCAAATTATTTTGTCAACATTGAGACCTGACACGGGGTAGAGAATCAAACCAAGGGAGATATATTTTCAGAATAGAAATATCTCTTTACTATTATTAGTACCTGTCTTCTTTTTATGCTGTCAACTATTACAAACCTTTGTCAATCGTTTAAGGCAAGAAAACATGTCTTGACAGTTTCTCGCTCTGCCGATAGCTCAGGTTGGCAAATTATTTAAGTGCTTGATTTGTATTTTTTACCGATCAGATCTTTTGTCTGTTCGCATATGTTTAGAATTTGAATTGCATCAGAGGACATATGGGGGAAATGTGTTAGCTTTAATCAAGTTAATGAAATGATAAATGCACTTAATCTACATTGTTTGAAAATGTCTTTGGGTTTCAGGTAGTAATAATGGTTATTGAATaaagaatctgtgtgtgtgttagtgcaaGTAGAACAGGTAGTTAAAGCACAGTAGCACTATCATGGCTCTCATACACACAGCTGTTGAAAAACAGTTTACTCAAATCTATAGTATACTCTTGAATACATTGAAATGTGTCATTTTGCATGGGGGCACTCACTTGGTATTTGTATTCAGTCTACTACTTGTACTGAAATATAAAAATTGGTCACTTGTGAAAGTTGACAGAACACGG

Function


NR:

description
ras-related protein rab7 isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021569648.2 True 2324 mRNA 0.43 6 72818168 72828562

Neighbor


gene id symbol gene type direction distance location
LOC110494513 LOC106565822 coding upstream 179071 72630322 ~ 72639097 (+)
LOC110494511 LOC106565826 coding upstream 196871 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding upstream 205370 72601325 ~ 72612798 (+)
LOC110494510 LOC106565827 coding upstream 233010 72547152 ~ 72585158 (+)
LOC110494508 LOC106565828 coding upstream 294401 72453359 ~ 72523767 (+)
LOC110494520 LOC106565815 coding downstream 33797 72862359 ~ 72864606 (+)
LOC110494525 LOC106565811 coding downstream 215784 73044346 ~ 73049958 (+)
LOC110494536 LOC106565804 coding downstream 538240 73366802 ~ 73384379 (+)
LOC110494537 LOC106565802 coding downstream 567178 73395740 ~ 73416687 (+)
taf4a LOC106565801 coding downstream 616188 73444750 ~ 73457632 (+)
G1485070 NA non-coding upstream 19953 72797895 ~ 72798215 (+)
G1485065 NA non-coding upstream 27221 72790071 ~ 72790947 (+)
G1485006 NA non-coding upstream 124691 72689644 ~ 72693477 (+)
G1484985 NA non-coding upstream 142501 72660006 ~ 72675667 (+)
G1484943 NA non-coding upstream 273725 72544161 ~ 72544443 (+)
G1485023 LOC106565817 non-coding downstream 18307 72846869 ~ 72852122 (+)
G1485196 NA non-coding downstream 194553 73023115 ~ 73036053 (+)
G1485233 NA non-coding downstream 259140 73087702 ~ 73087929 (+)
G1485238 NA non-coding downstream 266022 73094584 ~ 73094800 (+)
G1485257 NA non-coding downstream 290825 73119387 ~ 73119600 (+)
G1484897 NA other upstream 363244 72454563 ~ 72454924 (+)
G1484782 NA other upstream 512756 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1435896 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1637739 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 1976938 70809971 ~ 70847390 (+)
G1485260 NA other downstream 294264 73122826 ~ 73125356 (+)
G1485819 NA other downstream 452698 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1150328 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1559974 74388428 ~ 74432420 (+)

Expression



Co-expression Network