LOC110494520 (LOC106565815)


Basic Information

Item Value
gene id LOC110494520
gene name LOC106565815
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72862359 ~ 72864606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950594.1
TAGATAGCAGAAAGATGGCCGCGGTGACCGTCAAGTCGAAATCAATGAAAACGCTCTATCCGCTGTGAAATGAGATTTGCGGAAGAGGAGTTAGCAGGCGTGGCAAAATAACTTCCGCCTTTAAAACCCACTACAACAGAGAAATGACAGCGACCCTGCGCCCATACTTGAACGCTGTGCGTGCCACACTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTAGTGGAACGCCACAACAAACCAGAGGTGGAGGTCAGttGGTTGTTTTCTCATTACAGGAGTAGTAAAGAACTCCTACTACAGCCTGTGGTGATCAGCCGCAATGACAAGGAGAAGGTCCTAATTGAGGGCTCCATCAACTCTGTGCGAGTCAGCATTGCTGTGAAGCAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATTCTCAGGAGGAAACCAGTTGAGGGCTATGACATCAGTTTCCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCACCTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGCTGTCTGTCAATGCCCGTGCCCGTATCGTAGCGGAGGAGTTCCTCAAGAATTTCTGAGTTGGTGTCCTCTCATCCCTCACTGATCATATGACTTGGCCATCACTATGGATCTGTGAGACAGGGCAGGCTCAAGGGTCCGATAGCAGGAAGAGGGTAGAGAAGCGTACTGTAAGTGAACAACCAATCAGTGAGGAATACCATAGAAAAGTGACCAATccagtgtgggtgggtgtgtgtggcacCCAACTGCATATCACAAGTATTTCCCTGTACTCATAAATATTGATGACTGTATATAATGAATTATTTTCTAATTAGAACAAATCTCAAAGCCAAGGCGGGTCCTTAAGTATTAACCAGGTTGATATTCATGATTACCGGGACAATGAGAATGTGTTGTGCCAACTGAAACGGCCTGTGTTGTTTTTATACATTCTGTGACTTTATGTACTCTTGTGTTTTGTTACAACAAAGAAAATGTAACCTCAAAATGTAACGATCATCACGGagataaatttaaaaaatatgtatgttTACATTTTATTACAAGATACCACAGATTTATTGAACTGTCCTAAAATAAGCCATGTTTGAAATGATCACCAATAAAACTCATGAGAGCTTGTTTGTAGTTCTGAG
>XM_021569653.2
AGCAGAAAGATGGCCGCGGTGACCGTCAAGTCGAAATCAATGAAAACGCTCTATCCGCTGTGAAATGAGATTTGCGGAAGAGGAGTTAGCAGGCGTGGCAAAATAACTTCCGCCTTTAAAACCCACTACAACAGAGAAATGACAGCGACCCTGCGCCCATACTTGAACGCTGTGCGTGCCACACTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTAGTGGAACGCCACAACAAACCAGAGGTGGAGGTCAGGAGTAGTAAAGAACTCCTACTACAGCCTGTGGTGATCAGCCGCAATGACAAGGAGAAGGTCCTAATTGAGGGCTCCATCAACTCTGTGCGAGTCAGCATTGCTGTGAAGCAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATTCTCAGGAGGAAACCAGTTGAGGGCTATGACATCAGTTTCCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCACCTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGCTGTCTGTCAATGCCCGTGCCCGTATCGTAGCGGAGGAGTTCCTCAAGAATTTCTGAGTTGGTGTCCTCTCATCCCTCACTGATCATATGACTTGGCCATCACTATGGATCTGTGAGACAGGGCAGGCTCAAGGGTCCGATAGCAGGAAGAGGGTAGAGAAGCGTACTGTAAGTGAACAACCAATCAGTGAGGAATACCATAGAAAAGTGACCAATccagtgtgggtgggtgtgtgtggcacCCAACTGCATATCACAAGTATTTCCCTGTACTCATAAATATTGATGACTGTATATAATGAATTATTTTCTAATTAGAACAAATCTCAAAGCCAAGGCGGGTCCTTAAGTATTAACCAGGTTGATATTCATGATTACCGGGACAATGAGAATGTGTTGTGCCAACTGAAACGGCCTGTGTTGTTTTTATACATTCTGTGACTTTATGTACTCTTGTGTTTTGTTACAACAAAGAAAATGTAACCTCAAAATGTAACGATCATCACGGagataaatttaaaaaatatgtatgttTACATTTTATTACAAGATACCACAGATTTATTGAACTGTCCTAAAATAAGCCATGTTTGAAATGATCACCAATAAAACTCATGAGAGCTTGTTTGTAGTTCTGAG
>XM_021569654.2
ACCGATTATATTCTCTGCTTTTAAATTCCCAGGTTGAACCTTAATCAGACAGCGACCCTGCGCCCATACTTGAACGCTGTGCGTGCCACACTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTAGTGGAACGCCACAACAAACCAGAGGTGGAGGTCAGGAGTAGTAAAGAACTCCTACTACAGCCTGTGGTGATCAGCCGCAATGACAAGGAGAAGGTCCTAATTGAGGGCTCCATCAACTCTGTGCGAGTCAGCATTGCTGTGAAGCAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATTCTCAGGAGGAAACCAGTTGAGGGCTATGACATCAGTTTCCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCACCTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGCTGTCTGTCAATGCCCGTGCCCGTATCGTAGCGGAGGAGTTCCTCAAGAATTTCTGAGTTGGTGTCCTCTCATCCCTCACTGATCATATGACTTGGCCATCACTATGGATCTGTGAGACAGGGCAGGCTCAAGGGTCCGATAGCAGGAAGAGGGTAGAGAAGCGTACTGTAAGTGAACAACCAATCAGTGAGGAATACCATAGAAAAGTGACCAATccagtgtgggtgggtgtgtgtggcacCCAACTGCATATCACAAGTATTTCCCTGTACTCATAAATATTGATGACTGTATATAATGAATTATTTTCTAATTAGAACAAATCTCAAAGCCAAGGCGGGTCCTTAAGTATTAACCAGGTTGATATTCATGATTACCGGGACAATGAGAATGTGTTGTGCCAACTGAAACGGCCTGTGTTGTTTTTATACATTCTGTGACTTTATGTACTCTTGTGTTTTGTTACAACAAAGAAAATGTAACCTCAAAATGTAACGATCATCACGGagataaatttaaaaaatatgtatgttTACATTTTATTACAAGATACCACAGATTTATTGAACTGTCCTAAAATAAGCCATGTTTGAAATGATCACCAATAAAACTCATGAGAGCTTGTTTGTAGTTCTGAG
>XM_036950597.1
TATTCTCTGCTTTTAAATTCCCAGGTTGAACCTTAATCAGACAGCGACCCTGCGCCCATACTTGAACGCTGTGCGTGCCACACTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTAGTGGAACGCCACAACAAACCAGAGGTGGAGGTCAGttGGTTGTTTTCTCATTACAGGAGTAGTAAAGAACTCCTACTACAGCCTGTGGTGATCAGCCGCAATGACAAGGAGAAGGTCCTAATTGAGGGCTCCATCAACTCTGTGCGAGTCAGCATTGCTGTGAAGCAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATTCTCAGGAGGAAACCAGTTGAGGGCTATGACATCAGTTTCCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCACCTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGCTGTCTGTCAATGCCCGTGCCCGTATCGTAGCGGAGGAGTTCCTCAAGAATTTCTGAGTTGGTGTCCTCTCATCCCTCACTGATCATATGACTTGGCCATCACTATGGATCTGTGAGACAGGGCAGGCTCAAGGGTCCGATAGCAGGAAGAGGGTAGAGAAGCGTACTGTAAGTGAACAACCAATCAGTGAGGAATACCATAGAAAAGTGACCAATccagtgtgggtgggtgtgtgtggcacCCAACTGCATATCACAAGTATTTCCCTGTACTCATAAATATTGATGACTGTATATAATGAATTATTTTCTAATTAGAACAAATCTCAAAGCCAAGGCGGGTCCTTAAGTATTAACCAGGTTGATATTCATGATTACCGGGACAATGAGAATGTGTTGTGCCAACTGAAACGGCCTGTGTTGTTTTTATACATTCTGTGACTTTATGTACTCTTGTGTTTTGTTACAACAAAGAAAATGTAACCTCAAAATGTAACGATCATCACGGagataaatttaaaaaatatgtatgttTACATTTTATTACAAGATACCACAGATTTATTGAACTGTCCTAAAATAAGCCATGTTTGAAATGATCACCAATAAAACTCATGAGAGCTTGTTTGTAGTTCTGAG

Function

NR:

description
actin-related protein 2/3 complex subunit 4-like

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950594.1 False 1253 mRNA 0.44 6 72862359 72864606
XM_021569653.2 False 1227 mRNA 0.45 6 72862364 72864606
XM_021569654.2 False 1134 mRNA 0.44 6 72862538 72864606
XM_036950597.1 True 1147 mRNA 0.44 6 72862546 72864606

Neighbor

gene id symbol gene type direction distance location
LOC110494516 LOC105017315 coding upstream 33797 72818168 ~ 72828562 (+)
LOC110494513 LOC106565822 coding upstream 223262 72630322 ~ 72639097 (+)
LOC110494511 LOC106565826 coding upstream 241062 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding upstream 249561 72601325 ~ 72612798 (+)
LOC110494510 LOC106565827 coding upstream 277201 72547152 ~ 72585158 (+)
LOC110494525 LOC106565811 coding downstream 179740 73044346 ~ 73049958 (+)
LOC110494536 LOC106565804 coding downstream 502196 73366802 ~ 73384379 (+)
LOC110494537 LOC106565802 coding downstream 531134 73395740 ~ 73416687 (+)
taf4a LOC106565801 coding downstream 580144 73444750 ~ 73457632 (+)
LOC110494542 LOC106565797 coding downstream 1191569 74056175 ~ 74066815 (+)
G1485023 LOC106565817 non-coding upstream 10237 72846869 ~ 72852122 (+)
G1485070 NA non-coding upstream 64144 72797895 ~ 72798215 (+)
G1485065 NA non-coding upstream 71412 72790071 ~ 72790947 (+)
G1485006 NA non-coding upstream 168882 72689644 ~ 72693477 (+)
G1484985 NA non-coding upstream 186692 72660006 ~ 72675667 (+)
G1485196 NA non-coding downstream 158509 73023115 ~ 73036053 (+)
G1485233 NA non-coding downstream 223096 73087702 ~ 73087929 (+)
G1485238 NA non-coding downstream 229978 73094584 ~ 73094800 (+)
G1485257 NA non-coding downstream 254781 73119387 ~ 73119600 (+)
G1485258 NA non-coding downstream 255233 73119839 ~ 73120040 (+)
G1484897 NA other upstream 407435 72454563 ~ 72454924 (+)
G1484782 NA other upstream 556947 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1480087 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1681930 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 2021129 70809971 ~ 70847390 (+)
G1485260 NA other downstream 258220 73122826 ~ 73125356 (+)
G1485819 NA other downstream 416654 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1114284 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1523930 74388428 ~ 74432420 (+)

Expression


Co-expression Network