LOC110494531 (LOC106565806)


Basic Information

Item Value
gene id LOC110494531
gene name LOC106565806
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73226759 ~ 73251162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569666.2
AAGGGTGGCGTGCGCTGACGTCACATTTTTATGTACGTCTTGGGGAACGTGCGCGCACCTGAGTTTTCTGTATTCGACAGGAAAAGATGGCAGCGTCCATGTGCCGAGTCGGGAGCTCTGTGGGTCGAGCCCTCGCCAAATCCCGTAGCcccatcctgctgtctctccGGCGTGGTCAGGCTACGGTGACCTATGCCCAGAGCCTTCTGGGAGCTCCTGAGACCCGTCTCACTGCCCTGGACAATGGCCTGAGGATCGCATCGGAGGAGACCGGACACAGCACATGCACTGTTGGGCTGTGGATCAACTGTGGAAGTCGCTATGAGACTGAGAAGAACAATGGAGCTGGGTTCTTCCTGGAGCACATGGCTTTCAAGGGGACAAAAAAGCACACCCAGATGGCCCTGGAGCAGCAGGTGGAGTCCATGGGTGCTCACCTGAGTGCATACACTTCCCGGGAGCACACTGCCTACTACATGAAGACCCTGGCCAAAGATCTGCCCAAAGCggtggagctgttgtcagaggtaGTGCAGAGCAATGCCCTGAGCGAGGCTGACATTGAGCAGCAGAGGAGTGTGGTGCTGAGAGAGCTGGAGGAGGTAGAGGGCAGTCTACAGGACGTCTGTTTGGACCTGCTGCACGCCACAGCTTTTCAGGGTACCCCCCTGGGACACAGTGTGCTGGGACCGTCCCAAAACGCCAGGACTTTGAGTCGACAGGATCTGGTAGATTTCATCAGGAGCCACTACAAGGCCCCCCGAATGGTGCTGGCAGCTGCTGGAGGTGTGACTCATGAGGAACTGGTTGGGTTGGCCAAACAGCACTTTAGCGGAGTTTCCTTTGAGTACGAGGATGATGCTGTGCCTGTTCTGTCCCCCTGCCGCTTCTCTGGCAGCGAGATCCGCATGCGTGATGATGATATCCCCCTTGCACATATTGCTATCGCAGTGGAGGGTGCCAGTGCCACCAGCCCAGACATTGTGCCTCTCATGGTGGCCAACTCCATCATTGGCAGCTATGACATCACTTTTGGTGGTGGAAAGCACCTGAGCAGCCGCCTTGCTCGTCTGGCCTCAGAGGAGAGTCTGTGCCACAGCTTTCAGGCCTTCCACTCATCTTACAGCGATACTGGTCTGCTTGGCATCTACTTTGTCACCGACAAACACCACATCGATGACATGATGCACTGGTCACAGAACGCGTGGATGAATTTGTGCACCACAGTGACAGAGAGTGATGTTGCCAGAGCCAAGAACGCCCTCAAGGCCAGCTTGGTGGGACAGCTCGACGGAACGACACCGATATGTGATGACATTGGCAGGCACGTCCTGAACTACGGCCGCCGTATCCCCCTGGCTGAGTGGGACGCCCGCATCGATGCTGTGACACCCAGGATGGTGCGTGACGTCTGCTCCAAATATATCTATGACAAGTGTCCCGCTGTGTCTGCTGTTGGCCCCGTTGAGCAGCTGCCTGACTACAATAGAATGCGCAGTGCCATGTACTGGCTCCGCTTCTAAGAACCCAATAGTGTTGCTCTCTGCGTGTCCAATGTCTGctcttcctttcactctcctccactcccttacTTCTCCCATCACTGCAAGATTGAGGAACTGAGGACTGCCTCAGCTCATCAGCACAGATCTGTATCGGCTCCATCAAagttccccctcctccttctctcgctctcaccgCTCTATTCCTGCTATGTTAGTTTTAGTTGGTTATGAGGGAGAGAACCACTGTTGAGGGGGTGAATAAGTTCTGAGTGTTCTGTTTCCCTGTAATTATCAATAATTACTTATCGAGAAAGATTGTAATACAGGAGATTTTTGTTAATGTCACTGAGCCTTTTCATGCACCTGGTACTGTtctggggaagagaggggaacaCCTGAAGACATTCAGtgatacatacatatacagtaaaaTCAGGGCATTGTACAACCAGTTAATGTAGAGCAGAAGTATTTATGAATTGATGTAGTATTTTGTTTCTGTCCTATTGTACATAACAGAAGCTCTCATTCCGACAAATTGAAATAAAACATTGTAAAACA

Function

NR:

description
cytochrome b-c1 complex subunit 1, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00414 QCR1, UQCRC1; ubiquinol-cytochrome c reductase core subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569666.2 True 2066 mRNA 0.53 12 73226759 73251162

Neighbor

gene id symbol gene type direction distance location
LOC110495190 LOC106565948 coding downstream 12455 73213462 ~ 73216641 (-)
LOC110493248 NA coding downstream 24134 73191865 ~ 73202625 (-)
LOC110494530 LOC106565949 coding downstream 54996 73152660 ~ 73171763 (-)
LOC110494528 NA coding downstream 80951 73143285 ~ 73145808 (-)
trnaf-gaa-82 NA coding downstream 80979 73145708 ~ 73145780 (-)
LOC110494532 LOC106565803 coding upstream 6522 73257684 ~ 73267411 (-)
LOC110494534 LOC106565805 coding upstream 68914 73320076 ~ 73330568 (-)
LOC110493249 NA coding upstream 85876 73337038 ~ 73343027 (-)
LOC110494535 LOC106565947 coding upstream 138195 73389357 ~ 73393639 (-)
LOC110494540 NA coding upstream 179217 73430379 ~ 73444397 (-)
G1485638 NA non-coding downstream 75755 73149975 ~ 73151004 (-)
G1485710 NA non-coding downstream 80959 73143283 ~ 73145800 (-)
G1485698 NA non-coding downstream 106943 73119508 ~ 73119816 (-)
G1485692 NA non-coding downstream 113671 73112796 ~ 73113088 (-)
G1485690 NA non-coding downstream 118670 73107826 ~ 73108089 (-)
G1485978 NA non-coding upstream 20267 73271429 ~ 73271644 (-)
G1485985 NA non-coding upstream 36133 73287295 ~ 73287523 (-)
G1486015 NA non-coding upstream 83703 73334865 ~ 73335067 (-)
G1486029 NA non-coding upstream 101980 73353142 ~ 73353371 (-)
G1486046 NA non-coding upstream 131532 73382694 ~ 73384394 (-)
G1481574 NA other downstream 3440603 69785796 ~ 69786156 (-)
G1480410 NA other downstream 4518701 68706697 ~ 68708058 (-)
G1479993 NA other downstream 4727964 68498418 ~ 68498795 (-)
LOC110494447 LOC100286407 other downstream 5035679 68186985 ~ 68199023 (-)
LOC110494541 LOC106565798 other upstream 224584 73473726 ~ 73824081 (-)
G1487442 NA other upstream 1157806 74408968 ~ 74409990 (-)
G1487454 LOC106565788 other upstream 1171485 74422647 ~ 74423885 (-)

Expression


Co-expression Network