LOC118940492


Basic Information

Item Value
gene id LOC118940492
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74189995 ~ 74192932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037069.1
AGAGCGAGGGCCAATAGCACCGCCGTTTTAGCGCTAGAAGGACGGTTCACAAATGCGTTCTTGGCCAATGGGAGCGCGCGCTGGTTATAATGATTTACATTCTGTTTGAGGGATGCCGTTACAAATCGAAACAAATTTCTGTATTTTTACGGGTGAGATGTGGGAATCCAGCTGTCCATGGTTTAGGGACTCTGCAGGTGTAGAGTTCCTGGGGACACTCAAGGATTGTCCAAACAAGCCGAGGCAGACTGGCAGGCGCCAGCGCCGTGACGTCACCCATTCATCCGAGCATTGACGCCTGTCAGCCTGGCGCCGAGCGGGCGGTCGCTATGGAGACCTCAAACAACAGGCTCTCATTCCCCCATTCACCTGCATAGCGCGCAAACCCTGAGAACAAACTGGCTGCGGTGATCATCATTCATTTATCACCTTAAGTCACTCTGATGATATTACCGCCCCACGCACCTGCAAAGACTATTTAGGGAAAGAAAGCTAAAGATGGAGAGCTGTAAAGTGAAAGCATGCATTTGTACCGCATTTTTACCAAATTGATAGGATAAGTTGTGGCAGCATTCCTTCACATGGAAATATGTCTATATGCAGGAGTCTGTCTCTGTGGATGTCTCATCACATGAACACACTAGCAACCAGCAAAATGTGTTATATGAAATATGCAGCTTTTCTCAAAGCTAGAATGTCCAAGAAAAAGTGATGTATACATTAACCAAGCTATTGATTGCAAACAGTGTTTTATAGTGCAATTATATGTCATGCAACATTTTAAGACCATATGCGAAAATAACTataaaggttttttttttttttttttgtaaatgttcCCCTAGTTTTTCTAGGTTAATTTGCTTATGTATATAATTGCAATTGtttttaaatattacatttataaaCTAAACCCATTGTTATAAGGATCCAAATAAATTACCCATATGAGTAAGCAACCAGCCTCACAAGCAAAAAGGATGACTTAACTTTGTTTTTACCAGAAATAATAGTTAACAaggaaccttttttttttttacttgctgCAGTAGCCCCTaaaactaaaaaaaaatatatatatattgccctCTGTCCCAGGTCGCAGATGACAtggcagagggagaagggggggcaGCAAGAACAATGGGAGTGCGGTGCAGGGATTGTGGGAGAGAATCTAGACTGGAGCCACAGTGTCTGGAGCGCCCCTCCAATCCCCTCATCCAGCTTTTGTTCAGCTGCAAAAGCTATCAGCACTTCCTACTGACACCAACAATAACTCCACACAGCTGGGCCCTTTTCAGCCTGTTTGCAGCACATCAAGGcaatggaagagagagggaagaggcagaggagggaaaAGAAAAGTGAAACATATTAACTCCTGATTTTAACTGACAGAATAGCAATGCCTCCCACCATCACCCACCCATCCAAAATTCCCTCTTCCATGGCCAGTTATTCATTGTAGTTAATGCTGGAATGCAAACTGACATGTAATTGCACCAATGAATTATAATGATTTGTGGTAAAAATTTGATCCCACATTGTATTTCATCTTTGTACATTGTATTCTGTATGTATCAATGTCAACACATGCAATCAGATTACTTGATGATGGCAGCTGATGACGGAGACACTAGCATCCTTTAAACTTCTTTCTGGACAAGACAGCAGCCTTTGACACAGTGAATCATGAGATTCTCATCAGCAGACTTAAGAACTTTTTGGGATTCTCTGGCACAGCACTCCAGTGGTTTTGCTCCTATCTGACTGATAGACAAGAATTTGTGACACTTGGAAATTATGAACCCAACCCTGCCACAGTCACTCAAGGGGTCCCACAGTGCTCTGCTCTGGGGCCACTCCTGTTAACTATATACATGCTGCCACTTGATATACTAATCCAAAGATTTGGAGTAAACTTTCATTTTTATGCTGTTGACCCAGAAATATATTTGAGAACAAAAGGGGACACTGAGACTGTAACAACCAAACTGACAGAACTGTCTAGATGCAACCAAGAGATGCATGCAGTTGAACTTCCTAAAACTTAATTGCAGCAAAAGAGAGCTTGTGCCCTTTGGCTCTAAGAGTGCACAGAGTAAGATGAGCACTTTCTACATTTTAACCACCTGTATAACATTGCTTGAATCAGGTTATTCTTGTCCACTGCAGATGCTGAGAAGCTTGTCCATGCCCTGGTGACATCTCAGCTTGACTATTGTAGTGCACAGCTGACAGAAATCGCAGTAAGGCTTCTGTCTCGACTCCAGATAATCCAGAACGAAGCTGCCAGGATGCTCTCACAAACTACACAAAAAACTCACAGCACCCCTGTTTTATTCAACCTCCATTGGCTTCCTGTTCAATACAGGATCACATTTTAAATTCTGCTGCTGACCTTGTTTTTTCTACTTTTTGATGTATTGTTGCTGaattttgtttgtgtttttacaaataaattattattactaTCAAA

Function

NR:

description
ORF2-encoded protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037069.1 True 2482 mRNA 0.42 2 74189995 74192932

Neighbor

gene id symbol gene type direction distance location
LOC110494547 LOC106565793 coding upstream 5262 74151265 ~ 74184733 (+)
LOC110494543 LOC100136421 coding upstream 105415 74070061 ~ 74084580 (+)
LOC110494542 LOC106565797 coding upstream 123180 74056175 ~ 74066815 (+)
taf4a LOC106565801 coding upstream 732363 73444750 ~ 73457632 (+)
LOC110494537 LOC106565802 coding upstream 773308 73395740 ~ 73416687 (+)
LOC110493251 LOC106565789 coding downstream 120259 74313191 ~ 74387161 (+)
LOC110493252 LOC106565788 coding downstream 195496 74388428 ~ 74432420 (+)
LOC110494551 NA coding downstream 242685 74435617 ~ 74455534 (+)
LOC110494552 LOC106565784 coding downstream 263087 74456019 ~ 74505674 (+)
LOC110493253 LOC106565927 coding downstream 317849 74510781 ~ 74517438 (+)
G1486938 NA non-coding upstream 4255 74185537 ~ 74185740 (+)
G1486928 NA non-coding upstream 44328 74145452 ~ 74145667 (+)
G1486869 NA non-coding upstream 108545 74034319 ~ 74081450 (+)
G1486822 NA non-coding upstream 202847 73986355 ~ 73987148 (+)
G1486818 NA non-coding upstream 208053 73981654 ~ 73981942 (+)
G1487100 NA non-coding downstream 41028 74233960 ~ 74234247 (+)
G1487149 NA non-coding downstream 89135 74282067 ~ 74282292 (+)
G1487264 NA non-coding downstream 219203 74412135 ~ 74412430 (+)
G1487267 NA non-coding downstream 222893 74415825 ~ 74416409 (+)
G1486811 NA other upstream 210560 73978890 ~ 73979435 (+)
G1485819 NA other upstream 907976 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1064639 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1144407 73044346 ~ 73049958 (+)
G1484897 NA other upstream 1735071 72454563 ~ 72454924 (+)
G1490016 NA other downstream 2490667 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3815358 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3825436 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3996080 78189012 ~ 78190290 (+)

Expression


Co-expression Network