LOC110493253 (LOC106565927)


Basic Information

Item Value
gene id LOC110493253
gene name LOC106565927
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74510781 ~ 74517438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567515.2
CAGACATACAGCTAGAGAAGCAGCTGGTCATGGGGACTTGCCCAATCAAAGTATGGTCCAATATGCCAACTCTGAAGAATCCAACTGAACCTGCAATGCCCATGGTGGTATCCCTCTATGACATCCCCTCCCAAGGTCCCTTGGAATCCAGCATCCATATAGGGGAGAGGCTCACGGTGTTATTAGACGATGGGGATTTTTGGGTGGTGCGATCCACAACGACAGGCAATGAGAGTTATATCCCCAGCAACTACACTGCCAAAGTAATTAACAGGTGGCAGTATCATGGCATCAGCAGGTTGAATGCAGaggagctgctgctgctgtcacACAATCACACAGGGGCTTTCCTGATCCGAGAGAGTCAGACAAACACAGAAACCTACTCCCTCTCAGTCCTTGTGAAGAAGGACTCATATCTGGCCACAGTGAAACACTACCGCATCTGTCGCCTCCAAAACGGCTGGTTCTACATCTCCCCCAGCCTCACCTTCTACTCCCTGGGCCAATTAGTGGAACACTACTCTGAGTCAGCAGATGGGTTGTGCTGTTTACTGAGGGAGCCTTGCATCATCCAAGGCTCAAACAAAAGTACCCTGACCACCAGACCGTATCCCAAAGCTATCAGGAGGCCCACACTCAACTGGAATGACGTAGACAGTTCAATGATCTTCAATAAGGCCAGAGTGGATTCAGAGGACTCTCTAGTGAGCGAAGGTCTGAGGGAGGCCGTCAGCTCATACCTCTATATGACAGAGGCCAGCTGCCAGAACTGTGGCAAACACTGGGATACATGAGGAAAGGGAGGACTATGAGAGTAAAATAGCCAGACATTATGCTGTCTGGTCTGCTGTTGTGTAGGTGTAATGGTACTAAGCCAGAAAGGATGAGCCTACCATTTACAACCACaatgaaaaaaatgaaaactaCAAGCACAATCAATGTTTTGATGGTAGAATGTGTGTTAGGGTTCAGGTAGCCACAGGGAAGCCATGTTATGTGGCACTTCTCAAGTCTTCTAATGCTGTAGCTGTGCATGTGCTCAAGAGCACATTTCAGAGGCTGGAACCGAAAGGTATTATCTGTACTGTCTTTGGTATTATGATGTGATGAGCACTTCCTTTCAGCTCTAGGAAGGTTCCATTCTGCTTGTCCACACAGAAATGCCCATGCATTggtctattttattttttttaccaaagAAGGAAGATCACTGAACGACAAGAACGTTTTAATTGTACTAAATGTTGAATCGATTGTTAGTTTGGTCTGCAATCTGTTACTCTGCAATCCATTTGTATATGAATGAAATGCCATGTCTGAACTAACTTGAAACGAACTCTGACTTTTTAGCGCATTTGGCTCGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567515.2 True 1367 mRNA 0.46 7 74510781 74517438

Neighbor

gene id symbol gene type direction distance location
LOC110494552 LOC106565784 coding upstream 5107 74456019 ~ 74505674 (+)
LOC110494551 NA coding upstream 55247 74435617 ~ 74455534 (+)
LOC110493252 LOC106565788 coding upstream 78361 74388428 ~ 74432420 (+)
LOC110493251 LOC106565789 coding upstream 123620 74313191 ~ 74387161 (+)
LOC118940492 NA coding upstream 317849 74189995 ~ 74192932 (+)
LOC110494553 LOC106565783 coding downstream 235 74517673 ~ 74529873 (+)
LOC110494557 LOC106565945 coding downstream 100379 74617817 ~ 74622094 (+)
LOC110494558 LOC106565781 coding downstream 108547 74625985 ~ 74635714 (+)
LOC110494561 LOC106565779 coding downstream 126740 74644178 ~ 74656005 (+)
LOC110494562 LOC106565780 coding downstream 158052 74675490 ~ 74681473 (+)
G1487295 NA non-coding upstream 2992 74484274 ~ 74507789 (+)
G1487267 NA non-coding upstream 94372 74415825 ~ 74416409 (+)
G1487264 NA non-coding upstream 98351 74412135 ~ 74412430 (+)
G1487325 NA non-coding downstream 28984 74546422 ~ 74555701 (+)
G1487372 NA non-coding downstream 125241 74642679 ~ 74643086 (+)
G1487346 NA non-coding downstream 139240 74656678 ~ 74657334 (+)
G1487345 NA non-coding downstream 139985 74657423 ~ 74657775 (+)
G1487375 NA non-coding downstream 143053 74660491 ~ 74660795 (+)
G1486811 NA other upstream 531346 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1228762 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1385425 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1465193 73044346 ~ 73049958 (+)
G1490016 NA other downstream 2166161 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3490852 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3500930 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3671574 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3735191 78252629 ~ 78253308 (+)

Expression


Co-expression Network