LOC110494553 (LOC106565783)


Basic Information

Item Value
gene id LOC110494553
gene name LOC106565783
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74517673 ~ 74529873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569723.2
CGGTCGTCACAAGCTTAtatagccacaaagtcataaacacCGCCCATTTCTACAATTGATCTTCTTAAAAACTAACCGCTAATTTATGCCTAGCCCTAACCTTGAATTAACACAAACAAATTGTAGCCAATTTTGACCTTGTGACTGTGGAATCTGATGagatctagctagctaaatctTCCTGCTTGGAACAGTTCAGGGATAACAAATAATGCCGACGCTTCTGGGGTTGGAGTCCCCTTGGACTGGAGGAAAACGAAGTGTTCGTAATGGAAATATTATTGCAAAGATCAGACATAGTCAGATCGTTGGCCGGGGTTTCAGCCGAGGGACACAGCTCCCAGAGGCTCTTCTCCAGGAGAGGGATAAGCAGGCCAAATGGCACAGTATCCCCAAGCTGCTGCAGGAGCTCCATGAAAGCAGCCATCCCAACAGTGACCTCTCCTACACACACAGTGTACTAAAGGAACTATCATCCCTACTTTCCATGGAGGCGATGTCTTTTGTCACAGAAGACAGGAAGAGTGCTCAGGAATCAACCTTTCCCATCACATACACCTTTGACCTCTTTGGTGGAGTCGATCTGCTTGTAGAGATCTTGATGAGGCCTACACTCACTATGCAAAAGAAGAAACCTAAAATGAATGATGACTTGGTCAATGACTGCCTTAGTGTTCTTTACAACTGCTGCATATGTAAGGAAGGGGTAACAAAGAGCCTTGCAGCCAGAGACTACTTTGTCCTGTTTCTCTTTACCTTGATGACGAATAAGAAGACTTTTCTACAGACTGCCACTTTAATCGAGGATATTCTCGGAGTTAAGAAGGCGATGATCCAGTTGGAAGGGATTGCTAACCTGTCTGGTCTGGTCCAGAGCTTTGACCAGCAGCAGCTGGCTAACTTCTGCCGCATCCTCTCTGTCACAGTCTCAGAACCCGACTTGGGGAATGATGAAAAACACACCCTGCTGGCCAAGAATGCCCAGCAGAAACAAGACTCTAGCCTCTCATGTGCAGAGGACAACCAAGTGACCCTCCTAAACATCCCGGGCTTCATCGAGCGCCTGTGTAAGCTGGCCACCAGAAAGGTGTCTGAGGCCACGGGGGCGTCTAACTTCCTGCAGGAGGTGGAGGACTGGTATACGTGGCTTGACAACGCCTTGGTGCTGGACGCCCTCATGCAGATGGCCATGGAGCAGGCTGAGCACACCAGCACAGAGTCGTCAGACGAGAGTTCGTTGGCCACCAGTACTCTCATGCACCGCTTGCCCCAGTCCATGAAGATTGTCCATGAGATCATGTACAAGGTGGAGGTGCTGTACGTGCTCTGTGTGCTGCTTATGGGTAGTCATAGGAACCAGGTACACAAGATGCTAGCAGAGTTCCGTCTGATCCCAGGTCTCAACAACTTGTTTGACAAGCTAATCTGGAGGAAGTACACCTTATCCAATCATGTGGTGCATGGCCAGAATGAGAACTGTGATTGCAGTCCTGAAATATCCTTCAAGATCCAGTTTCTGAGGCTTCTCCAGAGCTTCAGCGACCACCATGAGAACAAGTACCTGCTTCTAAACAGTCAGGAGCTGAACGAGCTGAGTGCCATCTCTCTGAAGGCCAACATTCCAGAGGTGGAGGCGTTAGTCAATACAGACAGGAGTCTAGTGTGTGATGGGAAGAAAGGTCTCCTCACTCGTCTCCTCACTGTCATGAAGAAGGAGCCTCCAGACTCCTCCTTCAGGTTCTGGCAGGCCAGGGCAGTGGAGAGTTTCCTCCGTGGAGCCACCTCCTATGCAGACCAGATGTTTCTGCTGAAGAGGGGGCTTCTAGAAAACATGCTGTTCTGCATCATAGACAGTGGCTGTAAGTCCAAAGATGTCCTGCAGAGCTACTTCGACCTCCTGGGGGAACTCATGAAGTTCAACATCGACGCCTTCAAGAGGTTCAACATATACGTCAGCACAGATAACAAGTTCCAGACCTTCATGAGCCAGATCAACAGTTCCCTGATAGACTCCAACATGCTGGTGCGCTGCATCATTCTCTCCCTGGACCGCTTCGAGACCCAGACAGAGGACAGAAAAGTGGTGGAGGTGCTGTCTGAATGCTGTCTGCTGTCCTACTTGGCCAAGGTGGAGAACAGACTGTCTTTCCTCTTCAGGCTGGTCAACATCATCAACGTGCAGACTCTCACACAGGAGAATGTGAGCTGTCTGAACACCAGCCTAGTGGTCCTGATGCTGGCCAGGAGGAGGGGCAAGCTGCCCTTCTATCTCAAAGCCCTGAGAGGGAAGGAGCATGCAGAGAAGTACCCCGGCTGCCTGCTCAACAACTTCCACAACCTGCTGCGCTTCTGGCAGCGTCACTACCTCAACAGGGATAAGGACAGCACTTGTCTGGAGAACAGCTCCTGCATCCCCTTCAGCTACTGGAATGAGACCGTGTCAGTGCTGCTGCGCTCAGACAGGACTTCTCTGTGTGCCATAGCCAGCTACATAGATGAGCCCTTCATGGACATGGACCTGCTAGAGTGTTAACCCTAGGAGAGTTTGGGCTGGGCTTGTCGGGGGTTGCTGTGGTATGGACACCTATCATGGTTGATGACCCCGCCAAAGAGCATAGCCAGATCAAGGGTCATCCAGCGACCTGGAAGTGCTATGTGACTGCGGCAGGACACCAACTCGCTGCTATGCTGTCTGTAACTTGGCCAGGGGGCCATTACTGAAGATAATAAGGATGATTCTACAATGCTGGACATCTTCTCTCTATGCTCCTGTTCTCTTtgtaggagaagaagagaagactgCACCTGTCCCAGACCCCACAGTAAAGAAATATACATTTATTGGACCTTGAAATACTCCTTTGTTGGTGGTTTGCTTTAGGTGAAATCAAATGAAGCTTTTTTTATATATTACATAAATATATGGAAAAATCTATTTGTACGATGCAACaaaatagatatatacagtaccagtcagaagtttggacacacctactcattcaagggtttttctttacttaatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaa
>XM_021569724.2
CGGTCGTCACAAGCTTAtatagccacaaagtcataaacacCGCCCATTTCTACAATTGATCTTCTTAAAAACTAACCGCTAATTTATGCCTAGCCCTAACCTTGAATTAACACAAACAAATTGTAGCCAATTTTGACCTTGTGACTGTGGAATCTGATGagatctagctagctaaatctTCCTGCTTGGAACAGTTCAGGGATAACAAATAATGCCGACGCTTCTGGGGTTGGAGTCCCCTTGGACTGGAGGAAAACGAAGTGTTCGTAATGGAAATATTATTGCAAAGATCAGACATAGTCAGATCGTTGGCCGGGGTTTCAGCCGAGGGACACAGCTCCCAGAGGCTCTTCTCCAGGAGAGGGATAAGCAGGCCAAATGGCACAGTATCCCCAAGCTGCTGCAGGAGCTCCATGAAAGCAGCCATCCCAACAGTGACCTCTCCTACACACACAGTGTACTAAAGGAACTATCATCCCTACTTTCCATGGAGGCGATGTCTTTTGTCACAGAAGACAGGAAGAGTGCTCAGGAATCAACCTTTCCCATCACATACACCTTTGACCTCTTTGGTGGAGTCGATCTGCTTGTAGAGATCTTGATGAGGCCTACACTCACTATGCAAAAGAAGAAACCTAAAATGAATGATGACTTGGTCAATGACTGCCTTAGTGTTCTTTACAACTGCTGCATATGTGAAGGGGTAACAAAGAGCCTTGCAGCCAGAGACTACTTTGTCCTGTTTCTCTTTACCTTGATGACGAATAAGAAGACTTTTCTACAGACTGCCACTTTAATCGAGGATATTCTCGGAGTTAAGAAGGCGATGATCCAGTTGGAAGGGATTGCTAACCTGTCTGGTCTGGTCCAGAGCTTTGACCAGCAGCAGCTGGCTAACTTCTGCCGCATCCTCTCTGTCACAGTCTCAGAACCCGACTTGGGGAATGATGAAAAACACACCCTGCTGGCCAAGAATGCCCAGCAGAAACAAGACTCTAGCCTCTCATGTGCAGAGGACAACCAAGTGACCCTCCTAAACATCCCGGGCTTCATCGAGCGCCTGTGTAAGCTGGCCACCAGAAAGGTGTCTGAGGCCACGGGGGCGTCTAACTTCCTGCAGGAGGTGGAGGACTGGTATACGTGGCTTGACAACGCCTTGGTGCTGGACGCCCTCATGCAGATGGCCATGGAGCAGGCTGAGCACACCAGCACAGAGTCGTCAGACGAGAGTTCGTTGGCCACCAGTACTCTCATGCACCGCTTGCCCCAGTCCATGAAGATTGTCCATGAGATCATGTACAAGGTGGAGGTGCTGTACGTGCTCTGTGTGCTGCTTATGGGTAGTCATAGGAACCAGGTACACAAGATGCTAGCAGAGTTCCGTCTGATCCCAGGTCTCAACAACTTGTTTGACAAGCTAATCTGGAGGAAGTACACCTTATCCAATCATGTGGTGCATGGCCAGAATGAGAACTGTGATTGCAGTCCTGAAATATCCTTCAAGATCCAGTTTCTGAGGCTTCTCCAGAGCTTCAGCGACCACCATGAGAACAAGTACCTGCTTCTAAACAGTCAGGAGCTGAACGAGCTGAGTGCCATCTCTCTGAAGGCCAACATTCCAGAGGTGGAGGCGTTAGTCAATACAGACAGGAGTCTAGTGTGTGATGGGAAGAAAGGTCTCCTCACTCGTCTCCTCACTGTCATGAAGAAGGAGCCTCCAGACTCCTCCTTCAGGTTCTGGCAGGCCAGGGCAGTGGAGAGTTTCCTCCGTGGAGCCACCTCCTATGCAGACCAGATGTTTCTGCTGAAGAGGGGGCTTCTAGAAAACATGCTGTTCTGCATCATAGACAGTGGCTGTAAGTCCAAAGATGTCCTGCAGAGCTACTTCGACCTCCTGGGGGAACTCATGAAGTTCAACATCGACGCCTTCAAGAGGTTCAACATATACGTCAGCACAGATAACAAGTTCCAGACCTTCATGAGCCAGATCAACAGTTCCCTGATAGACTCCAACATGCTGGTGCGCTGCATCATTCTCTCCCTGGACCGCTTCGAGACCCAGACAGAGGACAGAAAAGTGGTGGAGGTGCTGTCTGAATGCTGTCTGCTGTCCTACTTGGCCAAGGTGGAGAACAGACTGTCTTTCCTCTTCAGGCTGGTCAACATCATCAACGTGCAGACTCTCACACAGGAGAATGTGAGCTGTCTGAACACCAGCCTAGTGGTCCTGATGCTGGCCAGGAGGAGGGGCAAGCTGCCCTTCTATCTCAAAGCCCTGAGAGGGAAGGAGCATGCAGAGAAGTACCCCGGCTGCCTGCTCAACAACTTCCACAACCTGCTGCGCTTCTGGCAGCGTCACTACCTCAACAGGGATAAGGACAGCACTTGTCTGGAGAACAGCTCCTGCATCCCCTTCAGCTACTGGAATGAGACCGTGTCAGTGCTGCTGCGCTCAGACAGGACTTCTCTGTGTGCCATAGCCAGCTACATAGATGAGCCCTTCATGGACATGGACCTGCTAGAGTGTTAACCCTAGGAGAGTTTGGGCTGGGCTTGTCGGGGGTTGCTGTGGTATGGACACCTATCATGGTTGATGACCCCGCCAAAGAGCATAGCCAGATCAAGGGTCATCCAGCGACCTGGAAGTGCTATGTGACTGCGGCAGGACACCAACTCGCTGCTATGCTGTCTGTAACTTGGCCAGGGGGCCATTACTGAAGATAATAAGGATGATTCTACAATGCTGGACATCTTCTCTCTATGCTCCTGTTCTCTTtgtaggagaagaagagaagactgCACCTGTCCCAGACCCCACAGTAAAGAAATATACATTTATTGGACCTTGAAATACTCCTTTGTTGGTGGTTTGCTTTAGGTGAAATCAAATGAAGCTTTTTTTATATATTACATAAATATATGGAAAAATCTATTTGTACGATGCAACaaaatagatatatacagtaccagtcagaagtttggacacacctactcattcaagggtttttctttacttaatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaa

Function

NR:

description
short transient receptor potential channel 4-associated protein-like isoform X2

GO: NA

KEGG:

id description
K11796 TRPC4AP; Trpc4-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569723.2 False 3078 mRNA 0.49 17 74517673 74529873
XM_021569724.2 True 3075 mRNA 0.49 17 74517673 74529873

Neighbor

gene id symbol gene type direction distance location
LOC110493253 LOC106565927 coding upstream 235 74510781 ~ 74517438 (+)
LOC110494552 LOC106565784 coding upstream 11999 74456019 ~ 74505674 (+)
LOC110494551 NA coding upstream 62139 74435617 ~ 74455534 (+)
LOC110493252 LOC106565788 coding upstream 85253 74388428 ~ 74432420 (+)
LOC110493251 LOC106565789 coding upstream 130512 74313191 ~ 74387161 (+)
LOC110494557 LOC106565945 coding downstream 87944 74617817 ~ 74622094 (+)
LOC110494558 LOC106565781 coding downstream 96112 74625985 ~ 74635714 (+)
LOC110494561 LOC106565779 coding downstream 114305 74644178 ~ 74656005 (+)
LOC110494562 LOC106565780 coding downstream 145617 74675490 ~ 74681473 (+)
adnpa LOC106565775 coding downstream 206348 74736221 ~ 74741481 (+)
G1487295 NA non-coding upstream 9884 74484274 ~ 74507789 (+)
G1487267 NA non-coding upstream 101264 74415825 ~ 74416409 (+)
G1487264 NA non-coding upstream 105243 74412135 ~ 74412430 (+)
G1487325 NA non-coding downstream 16549 74546422 ~ 74555701 (+)
G1487372 NA non-coding downstream 112806 74642679 ~ 74643086 (+)
G1487346 NA non-coding downstream 126805 74656678 ~ 74657334 (+)
G1487345 NA non-coding downstream 127550 74657423 ~ 74657775 (+)
G1487375 NA non-coding downstream 130618 74660491 ~ 74660795 (+)
G1486811 NA other upstream 538238 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1235654 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1392317 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1472085 73044346 ~ 73049958 (+)
G1490016 NA other downstream 2153726 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3478417 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3488495 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3659139 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3722756 78252629 ~ 78253308 (+)

Expression


Co-expression Network