LOC110494558 (LOC106565781)


Basic Information

Item Value
gene id LOC110494558
gene name LOC106565781
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74625985 ~ 74635714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569730.2
CCAGCCCCGCGTCTAAACTGACAATGCAGAGGTTTAATTTTAATCAGATAAAAAGCAGCTGTCAAGCGCCCAAAATCTTTCTCATGGTTAATGCCATTTTATTTGATTATATAATCCGAACAATtatttaaaatatgttttcaccTGGTGGGTGACAGAGGAAGACGATATTTTCTTCAACTGCCTGCAAGCAAGAGTTTTCAATGAGCTAGCTAAtgaacgttagttagctaacagctagctagctccttTTAGTTTGCtgcaccaccacaacaacacgcAGTGTGACCGACCAAGGTTATAACCAGATGGTGTTTtggtttctaatatatatatatgcatagcTGATATTCcctctgtcactcatggggaggGGATAGTATATTGTAGATAATAAGAGTGATAAGGTTAACATTACCCCACATTGAAGTTTAAATACCCGAGTAGGCTACTCTGTCTTGATACTGTTCAATTATTTGCGACACTGTGATTGACAACCTGCAATTTTCTGTGACTGATACAATAAGTAACAGTTACTTGCTTAGTAAATAACCACTATCatgtagctaacgttagatatAACGTTACCCAAATCCTAATGATAATTTGTGAATTCTCTGACGCAATATTATCTTGAAGAAAAATCACGATTTTCATGCTGAATTGTTGTCTCTGTCAGATAGAGAACCGTATAAAACGGGCGTGTTCGGTCACAGAGCTACAGTATCAGTTAACTGGGCTGAATGACTTCCTTATTCCCGAGCTACGGTAGCGAGGATTTAGTTTACCTTGCAATCGAATGTGTGTAGAACTTCGGAGTAACTGCTCTTCAAATACTTGGAAAAACGGTCAGTAAGATTGACTCAATTACATTCTAGTAATACAAGGGTGGCTTCTAGTCACACAACGTCTGCATTGCTTGTCAGCAGGAATATTGTGCACTTTAGAAGAGGGATGGAATCAAAAAGAGAAGGGAAGGACAAGTTCTTTATAGTGACACGGGGGAAGGCGAGAAAAGGGTTCGCAAGAGGATGTATCGGCCGTGTGGAGGCAGAGATGCAGAAGGGAGAGCTGATGGGACTGCTGTACGGAGGTGGCAGCAGTGGGGGTAACCCTAAGAGTGGGGGCATGGTGAAGATGGAGGACACATACCCCCTCACCTGCCACCAGGCCCAGCTGCTGCTCTTCGTGTCCCCCTCCAGTAAACGCCTGGAGCTCCTGTGTAACCCCCAGCTTTTTTTGGCTATCTGTGTGCTGTCTCAGGATGACCTGGTGGTAGTTAAGCACAAGAAGGGTCACCAACCAGGGCTGGTTAGGAACCTAATGCTGATCGGTAAGAAGGAGAACCAAGGAGACCTGCTGATGCTGGGCTTTGAGGTTGAGTTTGTGCAAGACTCTAATCAAACAGTGTCATCTAAGAAGCCCGCCCCTCTTCCCCTGTTCAGTGCAGCAGACATTGTCCAGGTTGTCCCAGCGTACTCTGTAGGCCTTGGCCCTAGCTGGAAAGACAGTCATTCAGAGGGTCTTAACAGAAAAGCGGGGTCACGTATCAACTCCATGCCTAATATGGGATCTTGTGGACGACAAGTGAGAGATATAAACCGCGTAGACCAGAGTGTCACCCCACCCGAAAGCCTGTCACACCACACTTTTGATGTGGGATCCCTGGTGGAGGTAACGTCCAACACTGGGATCACTGTATATGGGGTAATCCAGTGGATGGGAGTCCTTTCAGAAAATAAAATTGACTGGGCAGGAATTGAGCTGGATTATGAGGTGAATAATTGCTCAGATGGGACGTATGGAGGCCAGCGGTATTTCACTTGTAAAGGGGGCAGGGCCCTATTTTTGCCCCTAACAAAATGCAGTCCAGATGGAAGGTTCCTATGTCTCCGCTCTGAAAAGGAGACCTTCAAAGCCACAAATATCCTCCCAGTTACTCCATTGGAGGAAACCGATGAGAATGTCCCTCCTATCCCTGAGTCGGAAGCCTTGTCTTTGCTCGTGGGCAAGATGAAGGGGATCCAGGGGCATTACAACTCCTGCTACCTCGATGCCACTCTCTTCAGTCTGTTCAGCTCATCCATGACCCTGGACAGTGTTTGCCACAAACCAGCTGACACAGAACAGAGCATATCTCGCTCTCTGAGAAGAGACATCGTTAACTGTTTGCGCCGACAAGGTTTTGTCCCTGCTGAGAGCGTAATGAACTTCCGCAAGCAACTCGGCTGTGACACCTTTGTAACAGAAGAGAAAGACCCTGAAGAGTTCATCACAATCCTCATACAGCGGGTGCTGTGCATGGAGCCATTGCTTAAACTCAGATCGAATAACAACACATCTCAGGATGCCTACACATTCCAGATTATTCTGGATAAGGAGCAGGTGACACAGACTCCCACAGTTCAGCAGCTGCTGGATACCTCCTTCCTGTCTTGTGGCCTCAAGTTTGAGGAGATCCCATCCTGTCTTATGGTCCAGATGCCAAGGTTTGGGAAAAAGTACAAGATGTTCCCCCACATCATCCCTTCAACAGAGCTTGACATCACAGATCTTCTGTACAACTCCCCCCGAGAGTGCTTCCTCTGTGGGCATTTGGCAGAGTATGAGTGCCCCCAGTGCCTACAGGACCGCAAGCTCCAGCCAGGAAGAGTCAAACAGTACTGCACTACTTGCAAAACACAGGTGCACACTCATCCGTCTCGGAAGGGCCACTGCCCTAGAGCCCTGGCAGTGCCAGCGGAGGTTCCGGCAGATGCCCCTTTACCCAGGCACACGATGCAGTTGTTCGCTGTGCTCTGCATCCACACCAGCCACTATGTGTCTTTTGTGAAGTATGGGCCTGGCCCTCGCTCCTGGCTCTTCTTCGACAGCATGGCGGACAGATGTGGTGATGACCACAGTGGCTACAACATTCCAGAGATCAGGGCTTGTCCCGAGGTGGGTGACTTCCTGTCTCAGTCAGAGGAGGAGCTAGTGTGGGCTGACCCCTCCCAGGCTGGAGAGCCTGTCCGCAGGCTGCTGTGTGACTCCTACATGTGTTTGTACCAGAGCGCATCCATGGCCCTCTACAGATAAAGCCAGCACAAGGCTGAAGTGTACTGAAGAGAACACAGTGTTCTCACAACAGTGCTAAAATAACCTTGGTTTCAGCATCGCCATGGCATCAGTTTGttttcacaaaaacaaaacactgaTGATTAGTTGAAAAACTTAAACGTTAAAGGGATGCTTTTATGATAACTGAAATAATCACCAAGGTCTTCTCAAATGTTTTCCTTTGTCAATGTAATTGACCTTTGTTTCAATAAAGGTTGATGGATGAAGTTGGGGTTAGGAAGGGCAATTGAACTATTGGTATGTTTTATTGTTGCACATTTCTATGTATAATATAGATTTATGGAATTGAAGTGGATCTATGACTGCTTGTGGAATTCTGTTGAATGTCAATGTTTTCCTGCTTTTTTATGTTGAAGGAATgaaataatatattatatactgtagtaccttgttttttattgactgaaaatgttgttgaaTGAAAAGGGCTAAGT
>XM_021569729.2
GTCTAAACTGACAATGCAGAGGTTTAATTTTAATCAGATAAAAAGCAGCTGTCAAGCGCCCAAAATCTTTCTCATGGTTAATGCCATTTTATTTGATTATATAATCCGAACAATtatttaaaatatgttttcaccTGGTGGGTGACAGAGGAAGACGATATTTTCTTCAACTGCCTGCAAGCAAGAGTTTTCAATGAGCTAGCTAAtgaacgttagttagctaacagctagctagctccttTTAGTTTGCtgcaccaccacaacaacacgcAGTGTGACCGACCAAGGTTATAACCAGATGGTGTTTtggtttctaatatatatatatgcatagcTGATATTCcctctgtcactcatggggaggGGATAGTATATTGTAGATAATAAGAGTGATAAGGTTAACATTACCCCACATTGAAGTTTAAATACCCGAGTAGGCTACTCTGTCTTGATACTGTTCAATTATTTGCGACACTGTGATTGACAACCTGCAATTTTCTGTGACTGATACAATAAGTAACAGTTACTTGCTTAGTAAATAACCACTATCatgtagctaacgttagatatAACGTTACCCAAATCCTAATGATAATTTGTGAATTCTCTGACGCAATATTATCTTGAAGAAAAATCACGATTTTCATGCTGAATTGTTGTCTCTGTCAGATAGAGAACCGTATAAAACGGGCGTGTTCGGTCACAGAGCTACAGTATCAGTTAACTGGGCTGAATGACTTCCTTATTCCCGAGCTACGGTAGCGAGGATTTAGTTTACCTTGCAATCGAATGTGTGTAGAACTTCGGAGTAACTGCTCTTCAAATACTTGGAAAAACGGGTGGCTTCTAGTCACACAACGTCTGCATTGCTTGTCAGCAGGAATATTGTGCACTTTAGAAGAGGGATGGAATCAAAAAGAGAAGGGAAGGACAAGTTCTTTATAGTGACACGGGGGAAGGCGAGAAAAGGGTTCGCAAGAGGATGTATCGGCCGTGTGGAGGCAGAGATGCAGAAGGGAGAGCTGATGGGACTGCTGTACGGAGGTGGCAGCAGTGGGGGTAACCCTAAGAGTGGGGGCATGGTGAAGATGGAGGACACATACCCCCTCACCTGCCACCAGGCCCAGCTGCTGCTCTTCGTGTCCCCCTCCAGTAAACGCCTGGAGCTCCTGTGTAACCCCCAGCTTTTTTTGGCTATCTGTGTGCTGTCTCAGGATGACCTGGTGGTAGTTAAGCACAAGAAGGGTCACCAACCAGGGCTGGTTAGGAACCTAATGCTGATCGGTAAGAAGGAGAACCAAGGAGACCTGCTGATGCTGGGCTTTGAGGTTGAGTTTGTGCAAGACTCTAATCAAACAGTGTCATCTAAGAAGCCCGCCCCTCTTCCCCTGTTCAGTGCAGCAGACATTGTCCAGGTTGTCCCAGCGTACTCTGTAGGCCTTGGCCCTAGCTGGAAAGACAGTCATTCAGAGGGTCTTAACAGAAAAGCGGGGTCACGTATCAACTCCATGCCTAATATGGGATCTTGTGGACGACAAGTGAGAGATATAAACCGCGTAGACCAGAGTGTCACCCCACCCGAAAGCCTGTCACACCACACTTTTGATGTGGGATCCCTGGTGGAGGTAACGTCCAACACTGGGATCACTGTATATGGGGTAATCCAGTGGATGGGAGTCCTTTCAGAAAATAAAATTGACTGGGCAGGAATTGAGCTGGATTATGAGGTGAATAATTGCTCAGATGGGACGTATGGAGGCCAGCGGTATTTCACTTGTAAAGGGGGCAGGGCCCTATTTTTGCCCCTAACAAAATGCAGTCCAGATGGAAGGTTCCTATGTCTCCGCTCTGAAAAGGAGACCTTCAAAGCCACAAATATCCTCCCAGTTACTCCATTGGAGGAAACCGATGAGAATGTCCCTCCTATCCCTGAGTCGGAAGCCTTGTCTTTGCTCGTGGGCAAGATGAAGGGGATCCAGGGGCATTACAACTCCTGCTACCTCGATGCCACTCTCTTCAGTCTGTTCAGCTCATCCATGACCCTGGACAGTGTTTGCCACAAACCAGCTGACACAGAACAGAGCATATCTCGCTCTCTGAGAAGAGACATCGTTAACTGTTTGCGCCGACAAGGTTTTGTCCCTGCTGAGAGCGTAATGAACTTCCGCAAGCAACTCGGCTGTGACACCTTTGTAACAGAAGAGAAAGACCCTGAAGAGTTCATCACAATCCTCATACAGCGGGTGCTGTGCATGGAGCCATTGCTTAAACTCAGATCGAATAACAACACATCTCAGGATGCCTACACATTCCAGATTATTCTGGATAAGGAGCAGGTGACACAGACTCCCACAGTTCAGCAGCTGCTGGATACCTCCTTCCTGTCTTGTGGCCTCAAGTTTGAGGAGATCCCATCCTGTCTTATGGTCCAGATGCCAAGGTTTGGGAAAAAGTACAAGATGTTCCCCCACATCATCCCTTCAACAGAGCTTGACATCACAGATCTTCTGTACAACTCCCCCCGAGAGTGCTTCCTCTGTGGGCATTTGGCAGAGTATGAGTGCCCCCAGTGCCTACAGGACCGCAAGCTCCAGCCAGGAAGAGTCAAACAGTACTGCACTACTTGCAAAACACAGGTGCACACTCATCCGTCTCGGAAGGGCCACTGCCCTAGAGCCCTGGCAGTGCCAGCGGAGGTTCCGGCAGATGCCCCTTTACCCAGGCACACGATGCAGTTGTTCGCTGTGCTCTGCATCCACACCAGCCACTATGTGTCTTTTGTGAAGTATGGGCCTGGCCCTCGCTCCTGGCTCTTCTTCGACAGCATGGCGGACAGATGTGGTGATGACCACAGTGGCTACAACATTCCAGAGATCAGGGCTTGTCCCGAGGTGGGTGACTTCCTGTCTCAGTCAGAGGAGGAGCTAGTGTGGGCTGACCCCTCCCAGGCTGGAGAGCCTGTCCGCAGGCTGCTGTGTGACTCCTACATGTGTTTGTACCAGAGCGCATCCATGGCCCTCTACAGATAAAGCCAGCACAAGGCTGAAGTGTACTGAAGAGAACACAGTGTTCTCACAACAGTGCTAAAATAACCTTGGTTTCAGCATCGCCATGGCATCAGTTTGttttcacaaaaacaaaacactgaTGATTAGTTGAAAAACTTAAACGTTAAAGGGATGCTTTTATGATAACTGAAATAATCACCAAGGTCTTCTCAAATGTTTTCCTTTGTCAATGTAATTGACCTTTGTTTCAATAAAGGTTGATGGATGAAGTTGGGGTTAGGAAGGGCAATTGAACTATTGGTATGTTTTATTGTTGCACATTTCTATGTATAATATAGATTTATGGAATTGAAGTGGATCTATGACTGCTTGTGGAATTCTGTTGAATGTCAATGTTTTCCTGCTTTTTTATGTTGAAGGAATgaaataatatattatatactgtagtaccttgttttttattgactgaaaatgttgttgaaTGAAAAGGGCTAAGT

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase CYLD-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569730.2 False 3554 mRNA 0.46 14 74625985 74635714
XM_021569729.2 True 3505 mRNA 0.46 14 74625995 74635714

Neighbor

gene id symbol gene type direction distance location
LOC110494557 LOC106565945 coding upstream 3891 74617817 ~ 74622094 (+)
LOC110494553 LOC106565783 coding upstream 96112 74517673 ~ 74529873 (+)
LOC110493253 LOC106565927 coding upstream 108547 74510781 ~ 74517438 (+)
LOC110494552 LOC106565784 coding upstream 120311 74456019 ~ 74505674 (+)
LOC110494551 NA coding upstream 170451 74435617 ~ 74455534 (+)
LOC110494561 LOC106565779 coding downstream 8464 74644178 ~ 74656005 (+)
LOC110494562 LOC106565780 coding downstream 39776 74675490 ~ 74681473 (+)
adnpa LOC106565775 coding downstream 100507 74736221 ~ 74741481 (+)
LOC110494565 LOC106565774 coding downstream 110473 74746187 ~ 74749119 (+)
LOC118940106 NA coding downstream 132918 74768632 ~ 74770253 (+)
G1487325 NA non-coding upstream 70284 74546422 ~ 74555701 (+)
G1487295 NA non-coding upstream 118196 74484274 ~ 74507789 (+)
LOC110493252 LOC106565788 non-coding upstream 193864 74388428 ~ 74432420 (+)
G1487267 NA non-coding upstream 209576 74415825 ~ 74416409 (+)
G1487264 NA non-coding upstream 213555 74412135 ~ 74412430 (+)
G1487372 NA non-coding downstream 6965 74642679 ~ 74643086 (+)
G1487346 NA non-coding downstream 20964 74656678 ~ 74657334 (+)
G1487345 NA non-coding downstream 21709 74657423 ~ 74657775 (+)
G1487375 NA non-coding downstream 24777 74660491 ~ 74660795 (+)
G1487377 NA non-coding downstream 31046 74666760 ~ 74667072 (+)
G1486811 NA other upstream 646550 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1343966 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1500629 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1580397 73044346 ~ 73049958 (+)
G1490016 NA other downstream 2047885 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3372576 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3382654 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3553298 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3616915 78252629 ~ 78253308 (+)

Expression


Co-expression Network