LOC110494561 (LOC106565779)


Basic Information

Item Value
gene id LOC110494561
gene name LOC106565779
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74644178 ~ 74656005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569735.2
TACTTACAATTTGGACTTAGTCTGTTACACAACTGTTTCTTTCTTCATTCTGCTCGCATCACCTCGTCGGCGGTTTCCTCCAACACGTTTCACACTTTGCTTTTAACAGATTAATAATTGAAAATGAGTGGAGATCATTCCCACAACGATAGCCAGATAGACTCCAGCTCTCGGGTCAATGATTCTCATAAGCATAAAGATAAGTACAAGGATAAAGAACACAAACACAAGGACCACAAGAAGGACAGGGAGCGTGAGAAATCAAAATATGGCAACAGTGACCATAAGGAGTTCTCGGAAAAGAAACACAGAGAAAAGGAGCGAATAAAGCACGAAGATGtcagcacagacagacacaaggaCAAACACAAGGAAAAAGACCACAGGAAGGATGAGATCAAGCCGAAGAAGGAAAAAGAGAATGGCTTTGCCAGCCCTCATCGCATTAAGACGGAGCCGGACAATGATCACTTCTACCATTCTCCCAAGTCCCTGAAAAGACAGCGTGACAATGACGAaactGAATTCAAgcccaaaaaaataaaaattgaaaaTGACAGAGTGGACAAGAAAGCAAAGAAGAGGAAACAAGATGAGGACATCAAGCCCAAAAAGACACAAAAAAACAAGAAAGGGGAAGTTGCTGACGGGAAAAAGAAAGCAAAGAAGGAGCCTGAGGAGAAGTGGAAATGgtgggaagaggagagggcaaCTGACGGTTCCAAATGGAGGTTTCTGGAACATAAAGGCCCAGTCATGGCAGCACCTTACGAACCTCTTCccagcaaagtcagatttttctaTGATGGGAAGCAGATGAAGCTCGGCCCAGAAGCTGAGGAGGTGGCCACCTTCTTTGCCAAAATGCTGGACCATGAGTACACTACCAAGGATGCCTTCCGGAAAAACTTCTTCAAAGACTGGAGAAAGGAAATGACCTCGGAGGAGAAGTCTAAGATCACAGACCTGAAGAAGTGTAACTTCAATGAAATGGGGGAATACTTCAAGGCTCAGTCTGAGGCCAGAAAGGCCATGACTAAAGATGATAAACTGAAAATCAAAGTGGAGAACGAACGCCTCCTACAGGAGTATGGCTTCTGCATCATGGACAATCACAAGGAGCGCATTGCTAACTTTCGCATTGAGCCCCCGGGCCTGTTCCGTGGCCGAGGAGACCACCCCAAGATGGGCATGCTGAAACGCCGCATCCGCCCTGAGGACATCATCATAAACTGCAGCAAggaCTCCAAGCACCCCAAGCCTCCCCCTGGTACCAAATGGAAGGAGTTGCGTCATGACAACAAGGTGACCTGGCTGGTGTCGTGGACAGAGAACATCCAAGGCTCTATCAAGTATATCATGCTGAATCCCAGCTCAAGAATCAAGGGAGAGAAGGACTGGCAGAAGTATGAGACAGCCCGAAATCTGAAGAAGTGTGTGGACCGGTTAAGGAACCAGTACCGCGAGGACTGGAAGTCCAAAGAGATGAGGATCCGACAGAGAGCCGTGGCACTCTACTTCATCGATAAGCTGGCTCTGAGAGCAGGTAAtgagaaggaggaaggggagtCTGCGGACACAGTGGGCTGCTGCTCCCTCCGAGTGGAACACATCAACCTGTACCCCGAGAAGGACGGCCAGGAGTTTGTGGTGGAGTTTGACTTCCTGGGTAAAGACTCCATCCGCTACTACAACAAAGTCCCCGTGGAGAAGAGGGTATTCAAGAACCTGCAGCTGTTCATGGAAAACAAGCAGCCAGAGGATGACCTCTTTGACCGGCTCAATACCTCCATTCTGAACAAGCACCTTCAGGAGCTGATGGACGGGCTGACGGCCAAAGTGTTTCGTACCTACAACGCCTCCATCACTCTGCAGCAGCAGCTGAAGGAGCTCACCAGCCCGGATGAGAACCTTCCAGCCAAGATCCTGTCATACAACAGGGCCAACAGAGCTGTGGCCATCCTGTGTAACCATCAGAGGGCACCGCCCAAGACCTTTGAGAAGTCAATGCAGAACCTCCAGACTAAAATTGACGCAAAGAAGGACCAGCTATCTGACGCAAAGAGGGATGTGAAGAGCGCCAAGGCTGACCTCAAAGTACGGAGAGACGAGAAGTCCAAAAAAGCTGTGGAGACCAAGAAGAAGGCTGTGGAGAGGCTAGAAGAGCAGCTGATGAAGCTAGAGGTGCAGGCGACGGACCGCGAGGAGAACAAGCAGATTGCTCTGGGCACCTCCAAACTCAACTACTTGGATCCACGCATCTCTGTGGCCTGGTGCAAGAAGTGGGGTATCCCTATCGAGAAGATCTACAACAAAACTCAGCGTGAAAAGTTTGCCTGGGCTATCGACATGGCAGAGGATGACTATGAATTTTAAATCCTGTTTGCGGTTTTATAATTGTGATTTCTATTGTAATTTTATTGGATACTTGTTTTTAGCTTAACCGATTATACAGAATGGCCAGCCTGACAAGGAAATTATAGAATGAGTGTACACTCAACAAGCATGGTGAGGTTGAATGTCAGGGGTCAGGACGTATAGGCCATTACAGATGAGCTGGAGGGAGGGGGGACGAGGTGGGTTAGTCTGAGGTCTGGTCGGATGCCAGGTTCAAGGGCAGAACTATACCCATACCCAAAGGTGACGCGGTAATCTCTGATTGGATGAGAACCAGTGGATTGCCTTTTTTGCCTTTTGGCTCTCTTCCTCTTCAGCCACATGCACGACTTAAAGGTGTCTGAACTTTGAACTCTGGGGTCCTATTGCTACTGTATTCAACAAAAAATGACTGCTTTGTGTATtagattttattatttttttgttcacTTGGTCTGTATTTTTAGCCCTCCCATGTATTATTAATGGATTCTATATTTTAATAGAGAACAGTTAAATCAAATGAAATCCTGAAGTACACCCATGCGCCTTTTTGAGGAAATTAAATGTGATCTCTAGGTATGAGTTGTAGGGGGGATAAAGACCATGAAAGCTGTGTTTTGGTGAGTGTGATGTTTTAAACTGGACTATGTTGATTGTGTACCATAAAGAGGATGCATTGACACGGATAGGGGAAAATGCTACACCCATGTCAATATTTACATAAGCAGGCAGGATGTGATTTAATTTGTTTTACAGTATCTATCAGGGACTGATTTTCAATGTGAACCAATCATTTAATTTTTCTCCCCTTGCCAGCATCCTCTGGATCTTTCTGCATAGTCTATCTGGTTTTAACTTTATAATTTCTAATGATTGTTTGAGTGGAAAACAACTCCCTTATCTGTTACttgaaaaaaaaagaagctattTTAAAATGTAGTAATTGAAAATATTTTTCAATTAGGGATATCAACTTTGCCAAAAAAAAAAACCAATCTGTTACAGTTTAGGcagttatttttttaattgtgTTAAAGACGGAGGATGAAGAACATTAACAGGAGTTTCAATGTGAATTTTATTCCACTCTAGTGTCAGAGGAAAGTTGGTGTTTATAGCGGTAAGCTCAACTTCCTTTTCCTGTTTTTCAACCTCTTCTGTCATAGCCTCCAATCATGTTCTTGTTTTATGCTCATTGTAGGTTGAAAATGAATAAAACCCCTCAACTCCA
>XR_005037080.1
GTTACACAACTGTTTCTTTCTTCATTCTGCTCGCATCACCTCGTCGGCGGTTTCCTCCAACACGTTTCACACTTTGCTTTTAACAGATTAATAATTGAAAATGAGTGGAGATCATTCCCACAACGATAGCCAGATAGACTCCAGCTCTCGGGTCAATGCGGTCTGACTAGGAAACATAGCTGAAGTGCAGATGGCTGTGATATGGAGGGGAAACACGCAGGACCGTTTGTATCAAGACACGATTTCCAGCGGCGGAGGAAATTCTCATAAGCATAAAGATAAGTACAAGGATAAAGAACACAAACACAAGGACCACAAGAAGGACAGGGAGCGTGAGAAATCAAAATATGGCAACAGTGACCATAAGGAGTTCTCGGAAAAGAAACACAGAGAAAAGGAGCGAATAAAGCACGAAGATGtcagcacagacagacacaaggaCAAACACAAGGAAAAAGACCACAGGAAGGATGAGATCAAGCCGAAGAAGGAAAAAGAGAATGGCTTTGCCAGCCCTCATCGCATTAAGACGGAGCCGGACAATGATCACTTCTACCATTCTCCCAAGTCCCTGAAAAGACAGCGTGACAATGACGAaactGAATTCAAgcccaaaaaaataaaaattgaaaaTGACAGAGTGGACAAGAAAGCAAAGAAGAGGAAACAAGATGAGGACATCAAGCCCAAAAAGACACAAAAAAACAAGAAAGGGGAAGTTGCTGACGGGAAAAAGAAAGCAAAGAAGGAGCCTGAGGAGAAGTGGAAATGgtgggaagaggagagggcaaCTGACGGTTCCAAATGGAGGTTTCTGGAACATAAAGGCCCAGTCATGGCAGCACCTTACGAACCTCTTCccagcaaagtcagatttttctaTGATGGGAAGCAGATGAAGCTCGGCCCAGAAGCTGAGGAGGTGGCCACCTTCTTTGCCAAAATGCTGGACCATGAGTACACTACCAAGGATGCCTTCCGGAAAAACTTCTTCAAAGACTGGAGAAAGGAAATGACCTCGGAGGAGAAGTCTAAGATCACAGACCTGAAGAAGTGTAACTTCAATGAAATGGGGGAATACTTCAAGGCTCAGTCTGAGGCCAGAAAGGCCATGACTAAAGATGATAAACTGAAAATCAAAGTGGAGAACGAACGCCTCCTACAGGAGTATGGCTTCTGCATCATGGACAATCACAAGGAGCGCATTGCTAACTTTCGCATTGAGCCCCCGGGCCTGTTCCGTGGCCGAGGAGACCACCCCAAGATGGGCATGCTGAAACGCCGCATCCGCCCTGAGGACATCATCATAAACTGCAGCAAggaCTCCAAGCACCCCAAGCCTCCCCCTGGTACCAAATGGAAGGAGTTGCGTCATGACAACAAGGTGACCTGGCTGGTGTCGTGGACAGAGAACATCCAAGGCTCTATCAAGTATATCATGCTGAATCCCAGCTCAAGAATCAAGGGAGAGAAGGACTGGCAGAAGTATGAGACAGCCCGAAATCTGAAGAAGTGTGTGGACCGGTTAAGGAACCAGTACCGCGAGGACTGGAAGTCCAAAGAGATGAGGATCCGACAGAGAGCCGTGGCACTCTACTTCATCGATAAGCTGGCTCTGAGAGCAGGTAAtgagaaggaggaaggggagtCTGCGGACACAGTGGGCTGCTGCTCCCTCCGAGTGGAACACATCAACCTGTACCCCGAGAAGGACGGCCAGGAGTTTGTGGTGGAGTTTGACTTCCTGGGTAAAGACTCCATCCGCTACTACAACAAAGTCCCCGTGGAGAAGAGGGTATTCAAGAACCTGCAGCTGTTCATGGAAAACAAGCAGCCAGAGGATGACCTCTTTGACCGGCTCAATACCTCCATTCTGAACAAGCACCTTCAGGAGCTGATGGACGGGCTGACGGCCAAAGTGTTTCGTACCTACAACGCCTCCATCACTCTGCAGCAGCAGCTGAAGGAGCTCACCAGCCCGGATGAGAACCTTCCAGCCAAGATCCTGTCATACAACAGGGCCAACAGAGCTGTGGCCATCCTGTGTAACCATCAGAGGGCACCGCCCAAGACCTTTGAGAAGTCAATGCAGAACCTCCAGACTAAAATTGACGCAAAGAAGGACCAGCTATCTGACGCAAAGAGGGATGTGAAGAGCGCCAAGGCTGACCTCAAAGTACGGAGAGACGAGAAGTCCAAAAAGTAAAGCTGTGGAGACCAAGAAGAAGGCTGTGGAGAGGCTAGAAGAGCAGCTGATGAAGCTAGAGGTGCAGGCGACGGACCGCGAGGAGAACAAGCAGATTGCTCTGGGCACCTCCAAACTCAACTACTTGGATCCACGCATCTCTGTGGCCTGGTGCAAGAAGTGGGGTATCCCTATCGAGAAGATCTACAACAAAACTCAGCGTGAAAAGTTTGCCTGGGCTATCGACATGGCAGAGGATGACTATGAATTTTAAATCCTGTTTGCGGTTTTATAATTGTGATTTCTATTGTAATTTTATTGGATACTTGTTTTTAGCTTAACCGATTATACAGAATGGCCAGCCTGACAAGGAAATT
>XM_021569734.2
GTTACACAACTGTTTCTTTCTTCATTCTGCTCGCATCACCTCGTCGGCGGTTTCCTCCAACACGTTTCACACTTTGCTTTTAACAGATTAATAATTGAAAATGAGTGGAGATCATTCCCACAACGATAGCCAGATAGACTCCAGCTCTCGGGTCAATGCGGTCTGACTAGGAAACATAGCTGAAGTGCAGATGGCTGTGATATGGAGGGGAAACACGCAGGACCGTTTGTATCAAGACACGATTTCCAGCGGCGGAGGAAATTCTCATAAGCATAAAGATAAGTACAAGGATAAAGAACACAAACACAAGGACCACAAGAAGGACAGGGAGCGTGAGAAATCAAAATATGGCAACAGTGACCATAAGGAGTTCTCGGAAAAGAAACACAGAGAAAAGGAGCGAATAAAGCACGAAGATGtcagcacagacagacacaaggaCAAACACAAGGAAAAAGACCACAGGAAGGATGAGATCAAGCCGAAGAAGGAAAAAGAGAATGGCTTTGCCAGCCCTCATCGCATTAAGACGGAGCCGGACAATGATCACTTCTACCATTCTCCCAAGTCCCTGAAAAGACAGCGTGACAATGACGAaactGAATTCAAgcccaaaaaaataaaaattgaaaaTGACAGAGTGGACAAGAAAGCAAAGAAGAGGAAACAAGATGAGGACATCAAGCCCAAAAAGACACAAAAAAACAAGAAAGGGGAAGTTGCTGACGGGAAAAAGAAAGCAAAGAAGGAGCCTGAGGAGAAGTGGAAATGgtgggaagaggagagggcaaCTGACGGTTCCAAATGGAGGTTTCTGGAACATAAAGGCCCAGTCATGGCAGCACCTTACGAACCTCTTCccagcaaagtcagatttttctaTGATGGGAAGCAGATGAAGCTCGGCCCAGAAGCTGAGGAGGTGGCCACCTTCTTTGCCAAAATGCTGGACCATGAGTACACTACCAAGGATGCCTTCCGGAAAAACTTCTTCAAAGACTGGAGAAAGGAAATGACCTCGGAGGAGAAGTCTAAGATCACAGACCTGAAGAAGTGTAACTTCAATGAAATGGGGGAATACTTCAAGGCTCAGTCTGAGGCCAGAAAGGCCATGACTAAAGATGATAAACTGAAAATCAAAGTGGAGAACGAACGCCTCCTACAGGAGTATGGCTTCTGCATCATGGACAATCACAAGGAGCGCATTGCTAACTTTCGCATTGAGCCCCCGGGCCTGTTCCGTGGCCGAGGAGACCACCCCAAGATGGGCATGCTGAAACGCCGCATCCGCCCTGAGGACATCATCATAAACTGCAGCAAggaCTCCAAGCACCCCAAGCCTCCCCCTGGTACCAAATGGAAGGAGTTGCGTCATGACAACAAGGTGACCTGGCTGGTGTCGTGGACAGAGAACATCCAAGGCTCTATCAAGTATATCATGCTGAATCCCAGCTCAAGAATCAAGGGAGAGAAGGACTGGCAGAAGTATGAGACAGCCCGAAATCTGAAGAAGTGTGTGGACCGGTTAAGGAACCAGTACCGCGAGGACTGGAAGTCCAAAGAGATGAGGATCCGACAGAGAGCCGTGGCACTCTACTTCATCGATAAGCTGGCTCTGAGAGCAGGTAAtgagaaggaggaaggggagtCTGCGGACACAGTGGGCTGCTGCTCCCTCCGAGTGGAACACATCAACCTGTACCCCGAGAAGGACGGCCAGGAGTTTGTGGTGGAGTTTGACTTCCTGGGTAAAGACTCCATCCGCTACTACAACAAAGTCCCCGTGGAGAAGAGGGTATTCAAGAACCTGCAGCTGTTCATGGAAAACAAGCAGCCAGAGGATGACCTCTTTGACCGGCTCAATACCTCCATTCTGAACAAGCACCTTCAGGAGCTGATGGACGGGCTGACGGCCAAAGTGTTTCGTACCTACAACGCCTCCATCACTCTGCAGCAGCAGCTGAAGGAGCTCACCAGCCCGGATGAGAACCTTCCAGCCAAGATCCTGTCATACAACAGGGCCAACAGAGCTGTGGCCATCCTGTGTAACCATCAGAGGGCACCGCCCAAGACCTTTGAGAAGTCAATGCAGAACCTCCAGACTAAAATTGACGCAAAGAAGGACCAGCTATCTGACGCAAAGAGGGATGTGAAGAGCGCCAAGGCTGACCTCAAAGTACGGAGAGACGAGAAGTCCAAAAAAGCTGTGGAGACCAAGAAGAAGGCTGTGGAGAGGCTAGAAGAGCAGCTGATGAAGCTAGAGGTGCAGGCGACGGACCGCGAGGAGAACAAGCAGATTGCTCTGGGCACCTCCAAACTCAACTACTTGGATCCACGCATCTCTGTGGCCTGGTGCAAGAAGTGGGGTATCCCTATCGAGAAGATCTACAACAAAACTCAGCGTGAAAAGTTTGCCTGGGCTATCGACATGGCAGAGGATGACTATGAATTTTAAATCCTGTTTGCGGTTTTATAATTGTGATTTCTATTGTAATTTTATTGGATACTTGTTTTTAGCTTAACCGATTATACAGAATGGCCAGCCTGACAAGGAAATTATAGAATGAGTGTACACTCAACAAGCATGGTGAGGTTGAATGTCAGGGGTCAGGACGTATAGGCCATTACAGATGAGCTGGAGGGAGGGGGGACGAGGTGGGTTAGTCTGAGGTCTGGTCGGATGCCAGGTTCAAGGGCAGAACTATACCCATACCCAAAGGTGACGCGGTAATCTCTGATTGGATGAGAACCAGTGGATTGCCTTTTTTGCCTTTTGGCTCTCTTCCTCTTCAGCCACATGCACGACTTAAAGGTGTCTGAACTTTGAACTCTGGGGTCCTATTGCTACTGTATTCAACAAAAAATGACTGCTTTGTGTATtagattttattatttttttgttcacTTGGTCTGTATTTTTAGCCCTCCCATGTATTATTAATGGATTCTATATTTTAATAGAGAACAGTTAAATCAAATGAAATCCTGAAGTACACCCATGCGCCTTTTTGAGGAAATTAAATGTGATCTCTAGGTATGAGTTGTAGGGGGGATAAAGACCATGAAAGCTGTGTTTTGGTGAGTGTGATGTTTTAAACTGGACTATGTTGATTGTGTACCATAAAGAGGATGCATTGACACGGATAGGGGAAAATGCTACACCCATGTCAATATTTACATAAGCAGGCAGGATGTGATTTAATTTGTTTTACAGTATCTATCAGGGACTGATTTTCAATGTGAACCAATCATTTAATTTTTCTCCCCTTGCCAGCATCCTCTGGATCTTTCTGCATAGTCTATCTGGTTTTAACTTTATAATTTCTAATGATTGTTTGAGTGGAAAACAACTCCCTTATCTGTTACttgaaaaaaaaagaagctattTTAAAATGTAGTAATTGAAAATATTTTTCAATTAGGGATATCAACTTTGCCAAAAAAAAAAACCAATCTGTTACAGTTTAGGcagttatttttttaattgtgTTAAAGACGGAGGATGAAGAACATTAACAGGAGTTTCAATGTGAATTTTATTCCACTCTAGTGTCAGAGGAAAGTTGGTGTTTATAGCGGTAAGCTCAACTTCCTTTTCCTGTTTTTCAACCTCTTCTGTCATAGCCTCCAATCATGTTCTTGTTTTATGCTCATTGTAGGTTGAAAATGAATAAAACCCCTCAACTCCA

Function

NR:

description
DNA topoisomerase 1-like isoform X1

GO: NA

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569735.2 False 3610 mRNA 0.45 21 74644178 74656005
XR_005037080.1 False 2562 mRNA 0.48 22 74644201 74654874
XM_021569734.2 True 3689 mRNA 0.45 22 74644201 74656005

Neighbor

gene id symbol gene type direction distance location
LOC110494558 LOC106565781 coding upstream 8464 74625985 ~ 74635714 (+)
LOC110494557 LOC106565945 coding upstream 22084 74617817 ~ 74622094 (+)
LOC110494553 LOC106565783 coding upstream 114305 74517673 ~ 74529873 (+)
LOC110493253 LOC106565927 coding upstream 126740 74510781 ~ 74517438 (+)
LOC110494552 LOC106565784 coding upstream 138504 74456019 ~ 74505674 (+)
LOC110494562 LOC106565780 coding downstream 19485 74675490 ~ 74681473 (+)
adnpa LOC106565775 coding downstream 80216 74736221 ~ 74741481 (+)
LOC110494565 LOC106565774 coding downstream 90182 74746187 ~ 74749119 (+)
LOC118940106 NA coding downstream 112627 74768632 ~ 74770253 (+)
opn1sw2 LOC100135984 coding downstream 183543 74839548 ~ 74842075 (+)
G1487372 NA non-coding upstream 1092 74642679 ~ 74643086 (+)
G1487325 NA non-coding upstream 88477 74546422 ~ 74555701 (+)
G1487295 NA non-coding upstream 136389 74484274 ~ 74507789 (+)
LOC110493252 LOC106565788 non-coding upstream 212057 74388428 ~ 74432420 (+)
G1487267 NA non-coding upstream 227769 74415825 ~ 74416409 (+)
G1487346 NA non-coding downstream 673 74656678 ~ 74657334 (+)
G1487345 NA non-coding downstream 1418 74657423 ~ 74657775 (+)
G1487375 NA non-coding downstream 4486 74660491 ~ 74660795 (+)
G1487377 NA non-coding downstream 10755 74666760 ~ 74667072 (+)
G1487379 NA non-coding downstream 12710 74668715 ~ 74669020 (+)
G1486811 NA other upstream 664743 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1362159 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1518822 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1598590 73044346 ~ 73049958 (+)
G1490016 NA other downstream 2027594 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3352285 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3362363 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3533007 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3596624 78252629 ~ 78253308 (+)

Expression


Co-expression Network