LOC110494562 (LOC106565780)


Basic Information

Item Value
gene id LOC110494562
gene name LOC106565780
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74675490 ~ 74681473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569737.2
GGGTTTGTTTGCCTCCAAATTCAAACTGCTGGCCAATGAGCGAGCGCTTATAGCGGAGTGACAGGTGTATAGCGCAGGCTTGTCTACACGATTCTGGTTCCTAATTTTCGAGTAGCCAATACTGACTGCGGATGGGCTGGAACTGAGTAAATTGCAAAATACAAATTTGCTTCTTCTGGTTAGGCTACATTATATCACGAGGGACACTGAATTGAATGGTTACTGTCTATTCTAAATAGTTAACTTAACGTTATGGCTCTATCGCAATGTTTGGAAGATTCACCTGTAAGGTGGCCGTCAAGAAGACAGGAAAATGATTTGAATGTAAAGGAGTTATACAACGAAAGGCACCGACTGGCGTTAGAGGAACTTATTTCAGGTGGAGTTGATTCGTTTTTGGGATTTCTAAGAAAAGAGAGAATACCGAACTTTCTCTCGGATGACGAGATCAGACGCATTGGCCGTGCTGCGGTGGTTCCACGCGGTGTGTCCCTCCACGCGGAGGACGTGATTTTTGAACAGTCGGTAAGCAGCTCCATGGACTGCTCCTCGGTCACTTACTTCCCCGAGGTCTCGGACGTGGAGCCACCGCTGTTGGAAATCGGCTGGCCCGCCTTTACATCGGGCTCTTACCGAGGAGTCACTCGTGCTGTCGCCCACTTCCAACCCAGTTATGGAGAATGCATCTATAGTTGCAAGGAAGCTGCGAGAAGAATGATTCAAAGTGCCAAGGAGGTGATCGCCATAGTGACAGACTCTCTGACAGACCTGGACATCTTTAAGGATCTCCAGGAGGCGTGCACACAGCGCAGAGTTCCAGTCTACATCCTGCTGGACTGGTCCTGTGTGCCGGCATTCCTCAAAATGTGCAACAACATCAATGTGCGCCTGGACGATCTTAAGCAAATGCGAGTGCGGACCATAACTGGTGGTACATACTTCATGCGGTCAGGGGCCAAGATTACTGGGAAGGTTCATGAACGGTTCATGTTGATTGATGGGAACAGAGTGACTACAGGCTCCTACAGGTTCAATTGGACTGATGGGAAACTAAACAGCAGCAACATGATCGAGTTGTCTGGCCAGATCACTGAGAACTTTGATGAGGAGTTCCGGATTCTGTACGCTCAGTCCATGCCTGTTATTACCAGGGGCCCAGCCAGTGCCCGAAACAGTGGCATCTACGACCACCTTCTCATCAAACACCCCGTCACCTCATCCCCTCAGCCGTGCAAAGAGAGGCCCCCAGtcaagcctgtctgtctggaAGTATTGGGGAAAACTGTCTGTCTGACCAGCACACCCAGCCGGGCCCAGGCTGTGGCAGTGCCGCCCTCCAGAGAAATGACTGGGAAGAGCAGCCCGGTGTCGGCCTCCTCCACCATAGGGGAAGACTGGATGGAGCAGCGACACATGCAGGAGGTCCTGGCTGGAAGTGCCGCCCAGTGCCTGCCCACAGGTGACCCTGCCACTGCCACATCAGCAGTGGATGTGCAGGTCACACCCTCCGTCCCTACCTGCTGTCATGTCTCCACCCAGACCAGCTGCCCTGCGGTGGACCTTGGAGTGCAGACTGATCTGACTCAGTACACTAAGCACCTCTCCCCCAACAAGGCTACATTTACTCCAATTACCAGCACCACGACTCAGACCAACAACATTCAGAGTGAAGCTGCCGCCTCCTCAGattctgtctctacctcccccagGCAGCACCTCGCCCCCCATGGGGTGGACCGTCGCCCTGCAATCCGTCACTGTACTCCACCCCCTGATGGGAACCTGAGGGAGTGCTTCCGCAAGCTGACCAAAGAGCGTCAGTATCACTACTCCACCATCCGCTCCAAGCTGGAGCACATGGTGACCATGCTGTCCCACCGCCGTGAGCTGGTGGACCTCACCAACATGGCCCTGGGGCCTGGGCTGCACAGAGCATCCAATGCCCAGAAAGAGCGGAGACAGAGGCAGGGACATAACCCTGGCCTGCTGATGGACAGTGTGGGCATGGGCACATGGCCAAGGGCTAGATGTTTACACTAACAGGACTTACAGGGCTGCAGGGGCTTGAAGGTGGAGGGTGTTGTAGAAACCGCTCTGTGTTTTGTAGGTATACACTACTTGAAACAAATGGGTTTAAAGAGCAATATGACATTTGAGAATTAGTCTTCCTTAGAGTTTAGAATTTGAAAGTATGTGtcactgtgtctgtgttgtgatgTAGCCTTCTTCCTATTTTTATTGTGAATCTGTCCCTTTTCTTTGACCCCTGTTTGAACATTTCTACTTTAGAAACTGATGTCAAATGGCAGTAGACAGGCGATGGATATACTGTAATTTGCCTTGACTATTTTTGCTacaaaatgtaatgtttttaagTGTAGACATTGTGCAGTAAGACACAATCTATATATAGTtttgatgatttaaaaaaatatatattgaaacaATAAGATTGTCCAAAGATTTATTTGAGAAATACTGTAATTGCAATTCATAAATTGATATTTGATGAACATTTTAGATGAGACATTTTGTCTGTAACTAACATTTTATTATACAGCATTCTAACATTCAGTTTAACTTGTTAGGTTCCAATTttgagtaaataactcacggacactagagaagcttaaccaagttgaATTCTTCCCAAAGAGTCgttacagctgtaattcagacaaaCTCTTTTCACACAAGCAcggatatttaaccctttctcctaggctgagtctccttTGCAActgaacagccaatgcatctctgttgTTAGACAGAACtttagtgatatctgttcttcctcacttcatctaacctgacctctaccccaaagtgctcactcctccccaactccaAGGCTGTCATGGTTATTGATACCAGACGGTGTCTCTTCTCCACCCAGAGGATCCCTGATGGCTAAAAATAACATGTCCTGACATAATTATACATCACCCTCTTTTCCTCAGTGACATTGTTAGGTTCTAAGCTCTCCACCCGTCTCCCCTACACATTCCCAAAGCCATCTAACTCCTACAGAAATCCATTCACTTCTGATGTAAAAACCAGTCTATATCATCTCTCAGATACCATACTTCTGATCTATCATGTCTAGTATAGCAATGTTAAAAGTTTACCCAGAATCGAACAAACTAAATCTGAGTACTGCGAAAGCAGTTACGTGTTATTATATCAATGTATGTACTTTATTGCTTACACTTAAAATAAAGGAGTATTTTACGTAT

Function

NR:

description
protein FAM83D-like

GO: NA

KEGG:

id description
K16805 FAM83D, CHICA; protein FAM83D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569737.2 True 3239 mRNA 0.47 4 74675490 74681473

Neighbor

gene id symbol gene type direction distance location
LOC110494561 LOC106565779 coding upstream 19485 74644178 ~ 74656005 (+)
LOC110494558 LOC106565781 coding upstream 39776 74625985 ~ 74635714 (+)
LOC110494557 LOC106565945 coding upstream 53396 74617817 ~ 74622094 (+)
LOC110494553 LOC106565783 coding upstream 145617 74517673 ~ 74529873 (+)
LOC110493253 LOC106565927 coding upstream 158052 74510781 ~ 74517438 (+)
adnpa LOC106565775 coding downstream 54748 74736221 ~ 74741481 (+)
LOC110494565 LOC106565774 coding downstream 64714 74746187 ~ 74749119 (+)
LOC118940106 NA coding downstream 87159 74768632 ~ 74770253 (+)
opn1sw2 LOC100135984 coding downstream 158075 74839548 ~ 74842075 (+)
LOC110493256 LOC106565770 coding downstream 172653 74854126 ~ 74858312 (+)
G1487380 NA non-coding upstream 6002 74669289 ~ 74669488 (+)
G1487379 NA non-coding upstream 6470 74668715 ~ 74669020 (+)
G1487377 NA non-coding upstream 8418 74666760 ~ 74667072 (+)
G1487375 NA non-coding upstream 14695 74660491 ~ 74660795 (+)
G1487345 NA non-coding upstream 17715 74657423 ~ 74657775 (+)
G1487394 NA non-coding downstream 11465 74692938 ~ 74693142 (+)
G1487407 LOC106565776 non-coding downstream 31774 74713247 ~ 74715641 (+)
G1487411 NA non-coding downstream 38450 74719923 ~ 74720488 (+)
G1487412 NA non-coding downstream 39072 74720545 ~ 74721117 (+)
G1487419 NA non-coding downstream 47668 74729141 ~ 74729375 (+)
LOC110493252 LOC106565788 other upstream 266301 74388428 ~ 74432420 (+)
G1486811 NA other upstream 696055 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1393471 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1550134 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1629902 73044346 ~ 73049958 (+)
G1490016 NA other downstream 2002126 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3326817 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3336895 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3507539 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3571156 78252629 ~ 78253308 (+)

Expression


Co-expression Network