LOC110494565 (LOC106565774)


Basic Information

Item Value
gene id LOC110494565
gene name LOC106565774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74746187 ~ 74749119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569743.2
GTCTTTGATTGGTGATTCATTTTGTTAGAAGGCGGAACATCCGATCTACGTGACAAAACTGGCCAATGGCATTATTGGCCTTCTCTCCGCTCCAATTCGCTTGAAATATGTCGTTATTTTAAATGCTTTTATGCACAAAAATGGAATTTACCTTTTAAAAAATCGATACTTATTTATTGAACGGTACTTGAGTCTTATTTGCAATTggTATGATAACTTGTTGCAGCCCAGAGGAAACTGCCAGACAGCAAGCCTTTATTCCAGACATCTCAGTTAGTGTGAGGTATGGCAGAAGAGCCCTGGGAATCCAAATAGAGTGAAAAGTCAATGGCTAAAGAGGGTGCATAGAAGGTGGAAAAGATGTCTTACAGTAACAGGGAACTGGTGGTGTTTTTTATAAGCTATAGACTGTCCCAGAGGAATTATTCATGTTGTCAATTGGGGCTGGAGGGTGCAAGTGGACGGACTGACGGAGATGAGGCCATTGCAAATGGGTCTGTGGGGAACTACCGGAACAGCAGAAGCAATTTGGCGAAGCCCTCATCTCCACAGGGGGGCATGGAGCCAGTGAAAGCAGCACTACGGGACTCAGTGGATGAGTTTGAGCTACGCTACACCCGTGCCTTCAGTGACCTCTCCTCCCAgctccacatcacccctgccaCAGCCTACCACAGCTTTGAGAGTGTGATGGACGAAGTGTTCAGGGACGGGGTCAACTGGGGTCGCGTGGTGGGTCTGTTTGCTTTCGGCGGGGCCTTGTGTGTTGAGTGTGTTGAGAAGGATATGAGCCCGCTGGTGGCGCGCATCGCAGATTGGATGACCACCTATCTGGACAACCATATCCAGCCCTGGATCCAGAGCCAAGGCGGATGGGACCGTTTTGCAGAGATCTTTGGCAGAGATGCTGCTGCAGACGTTCGACGGTCCCAGGAGAGCATAATTAAATGGCTGCTAGTTGGGGTGATTCTGCTTTCAGGAGTGCTGGTCGGCACTCTCATCATGAAGAAACGCCAATGAAGTGGTGTAATATGAGCCACATCTAGTTTACCCCCAGCACATATAAACACAAaatcaacaaaaatataacttttataGTTTGTTTACATAAGCACAGTCTGCTTGTGCACTGACAGAAACCTTATGATTAGCCATGGCTATAACAGTTTTTGGGCAATGAATATGTAGCTTGGTGAGATGTCTCACAACTCACCTCTCCTGTCCTGCACTCTGTaacatttgtttttacatttgaAAAGTAATatgtaaaataacattttatgacATTATTTTCTTACTTTTATAATTATTATtggttttatttttaaaaaacttgGGTAGAGGGTGTTGCATTTGAGACTGGAGGTGCTTTAAATGGACCTGAAGCTATGCGTGAATGGGAAAACTACAGCTGGTGTGGTAGGACATAGGagattgtttatgtatttttagGTTTGTGTGTTACCCTTTACAGGGTTTTTTATTTTTAGGTTTGTGTGTTACCCTAGTACCAACTAAATACATTCTTTCCAAATTGACATTTGACCAATTACATTGAAgaatattgtttttttattttgtgttaaaGGCCCAATGCTGCTGTTTTTATCTTCATATGTAATCATTTCGGTgcaacaattaagtaccttactgtgatttcaATGAAAAtggtaatttttttaaatttattttttactcCCTTAGCAAGGGAATTTCAGCTAGGACTCTGGTTGTGGTCTTAGTAGGGAGGGGTAACAGCTCTTGCAAAatgggcattatcatcattttcacagtaTTCTACCAACCTCTtagtgaaaatatatataaaacatagtAATATCATGTTTTttactgcattgggcctttaactgAAACCTTTAGTTTCAATGTGACAATTTCTTTAAAATGTTACGTTCTTTCCTTGCTGTACTGGAGTTTCAGGCATGCactaaataataaaacatttatgtTTTAA
>XM_021569744.2
TAGAAATATTGCTATGGAGATGGGAAGCTTGTATAGTGAGTGTAAAAGCAGCTGTCATGTGTAGCTAGGTAGCGGCGATGCTAATTTGCTAGTTacgtatacatacatacatttgaCTTATTTTATGAATACCGTATTAGGAAATGTCTGCTTGTTTGTCACTTGTACCCTAGGTGGTATTAACTTGATCTCAATAGGTTTGTTTTTGATCTTTGAAATCCATGTATATGGCAGTAGCGCAGCATTAACGCAAATACATTTTGACAATTTGGTATGCACTCTTGTCAAACGTGCTATAATGTAAAATAGTAGCTATATTAGTTGGTTCGTTGTATATAGCCAAAAAAGTGCATTGTTCGGTGGAAATGATTAACATGATGGTTATAGCTTTAGATAGCCAAGACCGATAGCTTGCTAACGTTACCTGACATCAAAGCGGCGCCCCAATGGTATGGCGTAATAAGTTTCATACAGTTATgtgtcaaaaaaataaaaaataaacatctaCCATACCCAACAGACCTGGGTTTAGCAGTGCAGTATTTCAAGggTATGATAACTTGTTGCAGCCCAGAGGAAACTGCCAGACAGCAAGCCTTTATTCCAGACATCTCAGTTAGTGTGAGGTATGGCAGAAGAGCCCTGGGAATCCAAATAGAGTGAAAAGTCAATGGCTAAAGAGGGTGCATAGAAGGTGGAAAAGATGTCTTACAGTAACAGGGAACTGGTGGTGTTTTTTATAAGCTATAGACTGTCCCAGAGGAATTATTCATGTTGTCAATTGGGGCTGGAGGGTGCAAGTGGACGGACTGACGGAGATGAGGCCATTGCAAATGGGTCTGTGGGGAACTACCGGAACAGCAGAAGCAATTTGGCGAAGCCCTCATCTCCACAGGGGGGCATGGAGCCAGTGAAAGCAGCACTACGGGACTCAGTGGATGAGTTTGAGCTACGCTACACCCGTGCCTTCAGTGACCTCTCCTCCCAgctccacatcacccctgccaCAGCCTACCACAGCTTTGAGAGTGTGATGGACGAAGTGTTCAGGGACGGGGTCAACTGGGGTCGCGTGGTGGGTCTGTTTGCTTTCGGCGGGGCCTTGTGTGTTGAGTGTGTTGAGAAGGATATGAGCCCGCTGGTGGCGCGCATCGCAGATTGGATGACCACCTATCTGGACAACCATATCCAGCCCTGGATCCAGAGCCAAGGCGGATGGGACCGTTTTGCAGAGATCTTTGGCAGAGATGCTGCTGCAGACGTTCGACGGTCCCAGGAGAGCATAATTAAATGGCTGCTAGTTGGGGTGATTCTGCTTTCAGGAGTGCTGGTCGGCACTCTCATCATGAAGAAACGCCAATGAAGTGGTGTAATATGAGCCACATCTAGTTTACCCCCAGCACATATAAACACAAaatcaacaaaaatataacttttataGTTTGTTTACATAAGCACAGTCTGCTTGTGCACTGACAGAAACCTTATGATTAGCCATGGCTATAACAGTTTTTGGGCAATGAATATGTAGCTTGGTGAGATGTCTCACAACTCACCTCTCCTGTCCTGCACTCTGTaacatttgtttttacatttgaAAAGTAATatgtaaaataacattttatgacATTATTTTCTTACTTTTATAATTATTATtggttttatttttaaaaaacttgGGTAGAGGGTGTTGCATTTGAGACTGGAGGTGCTTTAAATGGACCTGAAGCTATGCGTGAATGGGAAAACTACAGCTGGTGTGGTAGGACATAGGagattgtttatgtatttttagGTTTGTGTGTTACCCTTTACAGGGTTTTTTATTTTTAGGTTTGTGTGTTACCCTAGTACCAACTAAATACATTCTTTCCAAATTGACATTTGACCAATTACATTGAAgaatattgtttttttattttgtgttaaaGGCCCAATGCTGCTGTTTTTATCTTCATATGTAATCATTTCGGTgcaacaattaagtaccttactgtgatttcaATGAAAAtggtaatttttttaaatttattttttactcCCTTAGCAAGGGAATTTCAGCTAGGACTCTGGTTGTGGTCTTAGTAGGGAGGGGTAACAGCTCTTGCAAAatgggcattatcatcattttcacagtaTTCTACCAACCTCTtagtgaaaatatatataaaacatagtAATATCATGTTTTttactgcattgggcctttaactgAAACCTTTAGTTTCAATGTGACAATTTCTTTAAAATGTTACGTTCTTTCCTTGCTGTACTGGAGTTTCAGGCATGCactaaataataaaacatttatgtTTTAA

Function

NR:

description
bcl-2-like protein 1

GO:

id name namespace
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0001894 tissue homeostasis biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0030878 thyroid gland development biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569743.2 False 1975 mRNA 0.41 3 74746187 74749119
XM_021569744.2 True 2318 mRNA 0.41 3 74746432 74749119

Neighbor

gene id symbol gene type direction distance location
adnpa LOC106565775 coding upstream 4706 74736221 ~ 74741481 (+)
LOC110494562 LOC106565780 coding upstream 64714 74675490 ~ 74681473 (+)
LOC110494561 LOC106565779 coding upstream 90182 74644178 ~ 74656005 (+)
LOC110494558 LOC106565781 coding upstream 110473 74625985 ~ 74635714 (+)
LOC110494557 LOC106565945 coding upstream 124093 74617817 ~ 74622094 (+)
LOC118940106 NA coding downstream 19513 74768632 ~ 74770253 (+)
opn1sw2 LOC100135984 coding downstream 90429 74839548 ~ 74842075 (+)
LOC110493256 LOC106565770 coding downstream 105007 74854126 ~ 74858312 (+)
LOC100135982 LOC100136940 coding downstream 109795 74858914 ~ 74861767 (+)
gnl3l gnl3l coding downstream 128074 74877193 ~ 74895463 (+)
G1487423 NA non-coding upstream 2378 74743590 ~ 74743809 (+)
G1487419 NA non-coding upstream 16812 74729141 ~ 74729375 (+)
G1487412 NA non-coding upstream 25070 74720545 ~ 74721117 (+)
G1487411 NA non-coding upstream 25699 74719923 ~ 74720488 (+)
G1487407 LOC106565776 non-coding upstream 30546 74713247 ~ 74715641 (+)
G1487639 NA non-coding downstream 2799 74751918 ~ 74752128 (+)
G1487640 gata1 non-coding downstream 3640 74752759 ~ 74763619 (+)
G1487644 NA non-coding downstream 23442 74772561 ~ 74772783 (+)
G1487650 NA non-coding downstream 37939 74787058 ~ 74787346 (+)
G1487771 NA non-coding downstream 122501 74871620 ~ 74871843 (+)
LOC110493252 LOC106565788 other upstream 336998 74388428 ~ 74432420 (+)
G1486811 NA other upstream 766752 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1464168 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1620831 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1700599 73044346 ~ 73049958 (+)
G1490016 NA other downstream 1934480 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3259171 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3269249 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3439893 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3503510 78252629 ~ 78253308 (+)

Expression


Co-expression Network