Gene
RNA
| Item | Value |
|---|---|
| gene id | opn1sw2 |
| gene name | LOC100135984 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 74839548 ~ 74842075 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| blue-sensitive opsin-like |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124322.2 | True | 1437 | mRNA | 0.45 | 5 | 74839548 | 74842075 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118940106 | NA | coding | upstream | 69295 | 74768632 ~ 74770253 (+) |
| LOC110494565 | LOC106565774 | coding | upstream | 90429 | 74746187 ~ 74749119 (+) |
| adnpa | LOC106565775 | coding | upstream | 98067 | 74736221 ~ 74741481 (+) |
| LOC110494562 | LOC106565780 | coding | upstream | 158075 | 74675490 ~ 74681473 (+) |
| LOC110494561 | LOC106565779 | coding | upstream | 183543 | 74644178 ~ 74656005 (+) |
| LOC110493256 | LOC106565770 | coding | downstream | 12051 | 74854126 ~ 74858312 (+) |
| LOC100135982 | LOC100136940 | coding | downstream | 16839 | 74858914 ~ 74861767 (+) |
| gnl3l | gnl3l | coding | downstream | 35118 | 74877193 ~ 74895463 (+) |
| LOC110494570 | LOC106565767 | coding | downstream | 76189 | 74918264 ~ 74928441 (+) |
| cxxc1b | LOC106565764 | coding | downstream | 95693 | 74937768 ~ 74943605 (+) |
| G1487650 | NA | non-coding | upstream | 52202 | 74787058 ~ 74787346 (+) |
| G1487644 | NA | non-coding | upstream | 66765 | 74772561 ~ 74772783 (+) |
| G1487640 | gata1 | non-coding | upstream | 75929 | 74752759 ~ 74763619 (+) |
| G1487639 | NA | non-coding | upstream | 87420 | 74751918 ~ 74752128 (+) |
| G1487423 | NA | non-coding | upstream | 95739 | 74743590 ~ 74743809 (+) |
| G1487771 | NA | non-coding | downstream | 29545 | 74871620 ~ 74871843 (+) |
| G1487778 | NA | non-coding | downstream | 33107 | 74875182 ~ 74875389 (+) |
| G1487790 | NA | non-coding | downstream | 57358 | 74899433 ~ 74899684 (+) |
| G1487809 | NA | non-coding | downstream | 87607 | 74929682 ~ 74929897 (+) |
| G1487813 | NA | non-coding | downstream | 102824 | 74944899 ~ 74945117 (+) |
| LOC110493252 | LOC106565788 | other | upstream | 430359 | 74388428 ~ 74432420 (+) |
| G1486811 | NA | other | upstream | 860113 | 73978890 ~ 73979435 (+) |
| G1485819 | NA | other | upstream | 1557529 | 73281260 ~ 73282019 (+) |
| G1485260 | NA | other | upstream | 1714192 | 73122826 ~ 73125356 (+) |
| LOC110494525 | LOC106565811 | other | upstream | 1793960 | 73044346 ~ 73049958 (+) |
| G1490016 | NA | other | downstream | 1841524 | 76683599 ~ 76684020 (+) |
| G1491886 | NA | other | downstream | 3166215 | 78008290 ~ 78008799 (+) |
| G1491899 | NA | other | downstream | 3176293 | 78018368 ~ 78019816 (+) |
| G1491963 | NA | other | downstream | 3346937 | 78189012 ~ 78190290 (+) |
| G1492003 | NA | other | downstream | 3410554 | 78252629 ~ 78253308 (+) |
