LOC100135982 (LOC100136940)


Basic Information

Item Value
gene id LOC100135982
gene name LOC100136940
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74858914 ~ 74861767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124320.1
GTTGGTTGCTAACACCACAACAGGTGATCAGCAAGACAAGACAACAGAAGCCAACCACAAGACAGAGAAAAAGCGTCCAACAGATACTTTCTCAGAAATGGCAGAAAGCTGGGGAAGTGCTGCTTATGCAGCCAGGCGACAAAACCAAGATACAACGAGAGAATCTTCCTTTACCTTCACCAACAGCAATAACACCAAAGATCCCTTTGAGGGCCCCAACTACCACATTGCTCCAAGATGGGTGTACAATGTTTCAACACTTTGGATGATCATAGTGGTCATCCTCTCAGTCTTCACCAATGGCCTGGTACTGGTGGCCACTGCAAAATTCAAGAAGCTCCAACACCCTCTGAACTGGATCTTGGTCAACCTTGCTATTGCTGACATTGGAGAAACACTTTTGGCAAGCACCATCAGCGTTTGCAACCAGTTTTTTGGCTACTTCATTCTGGGACATCCAATGTGTGTCTTTGAGGGATACACTGTCTCCACTTGCGGAATTGCTGCTCTGTGGTCCCTGGCTGTCATCTCTTGGGAGAGATGGGTGGTGGTGTGCAAGCCCTTTGGAAGTGTCAAGTTTGATGCCAAATGGGCCATGGGAGGCATTATCTTCTCCTGGGTCTGGTCTGCTTTCTGGTGTGCCCCCCCCATCTTTGGCTGGAGCAGgtACTGGCCTCACGGCCTGAAGACTTCCTGCGGACCTGATGTGTTCGGAGGCAATGAGGATCCTGGAGTCAAGTCCTACATGATTACTCTCATGATTACATGCTGCTTCTTCCCCCTGTTCGTGATCATCTTCTGCTACATTTTCGTGTGGCTAGCCATTCGTGCTGTTGGCGCAGCAAAAGACTCTGAGTCAACACAGAAGGCCGAGAAGGAAGTGTCCAGGATGGTTGTTGTCATGATTATAGCTTACTGTGTATGCTGGGGACCTTATACCTGCTTTGCCTGCTTTGCTGCGGCTAACCCTGGGTATGCTTTCCACCCTCTGGCAGCCGCAATTCCTGCCTACTTTGCCAAGAGCGCCACCATCTACAATCCAGTTATATATGTCTTCATGAACAAACAGttccgtACTTGCATCATGCAGCTCTTTGGAAAGGCAGAAGATGATGGCACTGAAGTGTCTACATCAAAAACAGAGGTTTCCTCTGTGGCACCTGCATAACCCCAGACAACATTGTACCTCTTGGAAACAAATCGTGAACCTTCTGAGGAGATTTTCCAAATGGGACTTTTCAAATGTACAGTACATCCTCTTGTTTTTCTTAAACAAACATTCTCCCACAACTTTTCAGGAGATTATTAACCTTTACCTCATACAGGTGCAATGTGTGTAAAAACGTTACCCACAAAACTAAATTGCTATGAACCACCCCTTGGAGCTTTTTTAATCCATGGTCTTCGATTAAACAGGCAGAGAATTGTGTGGTAATTGATATGCATATTATAGCTATTTGAGTGGTACATTATGGGAATAtgtatatactactactatcaatCTCTGTCCAAGTGGCAAGAAAAAGTCGGCGTCTTGTAATGCATTCCCTTCACTCTGCAGTGGCTAAACTAGACAGCTTCACAGCTAAGGAAAACTGAAATTAACTGCCAATGGAAATCTGATCATCTCAAAATGATGTGAACAATGTATGGTTTGAAAACCCCTTACTTTTAAAGTAATTTATGAGGTAAACATTTTGTATCCCTCttgcaaataaaaaaacaaaaaaataataatactagtAAATAGATAATTGTGTATACAATGTAtttaacaatgtttttttctgattaAAATACATTTCATGCATGCAGCAAAATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04251 OPN1LW, OPN1MW; long/medium wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124320.1 True 1822 mRNA 0.44 10 74858914 74861767

Neighbor

gene id symbol gene type direction distance location
LOC110493256 LOC106565770 coding upstream 602 74854126 ~ 74858312 (+)
opn1sw2 LOC100135984 coding upstream 16839 74839548 ~ 74842075 (+)
LOC118940106 NA coding upstream 88661 74768632 ~ 74770253 (+)
LOC110494565 LOC106565774 coding upstream 109795 74746187 ~ 74749119 (+)
adnpa LOC106565775 coding upstream 117433 74736221 ~ 74741481 (+)
gnl3l gnl3l coding downstream 15426 74877193 ~ 74895463 (+)
LOC110494570 LOC106565767 coding downstream 56497 74918264 ~ 74928441 (+)
cxxc1b LOC106565764 coding downstream 76001 74937768 ~ 74943605 (+)
mbd1b LOC106565762 coding downstream 88931 74950698 ~ 74968199 (+)
ccdc120 LOC106565760 coding downstream 106590 74968357 ~ 74997618 (+)
G1487650 NA non-coding upstream 71568 74787058 ~ 74787346 (+)
G1487644 NA non-coding upstream 86131 74772561 ~ 74772783 (+)
G1487640 gata1 non-coding upstream 95295 74752759 ~ 74763619 (+)
G1487639 NA non-coding upstream 106786 74751918 ~ 74752128 (+)
G1487423 NA non-coding upstream 115105 74743590 ~ 74743809 (+)
G1487771 NA non-coding downstream 9853 74871620 ~ 74871843 (+)
G1487778 NA non-coding downstream 13415 74875182 ~ 74875389 (+)
G1487790 NA non-coding downstream 37666 74899433 ~ 74899684 (+)
G1487809 NA non-coding downstream 67915 74929682 ~ 74929897 (+)
G1487813 NA non-coding downstream 83132 74944899 ~ 74945117 (+)
LOC110493252 LOC106565788 other upstream 449725 74388428 ~ 74432420 (+)
G1486811 NA other upstream 879479 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1576895 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1733558 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1813326 73044346 ~ 73049958 (+)
G1490016 NA other downstream 1821832 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3146523 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3156601 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3327245 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3390862 78252629 ~ 78253308 (+)

Expression


Co-expression Network