gnl3l (gnl3l)


Basic Information

Item Value
gene id gnl3l
gene name gnl3l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74877193 ~ 74895463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569748.2
AAACAAATTCGCATCGCAGACATTCGGTTTCAGGGCTAGTAATCTGCAGCTGCATGCGTATTTGTCTTTGCTgaagcttttattttgaagagtGTTAACCTGATTTAGTGATTTGACGTCAGATCCGCGCAATCCATCACCAACCACtccacatgtggaatcatgtcgAAGGCCAGAAAACAAAAGCGAGCGAAAGTACTTTTCCAAGGAAAACAAAAGGGGAAAGATGGACAACAGACTCAAGGAGGGAAAATGCATTCAGAGCTGTCCATTGCACGCCATCCCAAAGAGTATGGAAAACCAGAAGAAATCCGGAAGAAAAGGCTTCAGGAGCTCCAAGAAAAGCAGAGGTTGTCAAGAGAACGGGAGCAGATGAAGAGGAGAAGtctggatggttttcagagagaTGTTCTAGAGCGACAAAGAGAGTTTGAGCAGAGGGAAACTGAGATGCAGAATTTAGAGAAGCATGTCAATTTTGAAAATGAGAATTCAAGAAAGGCGTACTACAGGGAATTCAAAAAGGTGGTTGAGGCCTCTGATGTGATTCTGGAGGTTCTGGATGCCCGTGACCCTATTGGCTGCCGTTGTCCTCAGGTGGAGCAGGCTGTAATTCAGAGTGGCACTGACAAGAAAATAGTCCTGGTGCTTAACAAGATTGACCTGGTGTCCAAGGAGATTGTGGAGAAATGGATCAAGTATCTTCGCAATGAATTTCCCACTGTGGCTTTCAAAGCCTCAACGCAACAACAGAACAAGAATTTGAAGCGAAGCAATGTACCTGTTACCCAGGCCACTGCTGAGCTCCTAGGTAGCAGTGCCTGTGTGGGTGCAGAATGCCTGATGAAACTTTTGGGGAACTACTGCCGCAACCTGGACATTAAGACAGCCATCACTGTTGGTGTGGTTGGCTTTCCCAATGTTGGAAAGAGCAGTCTGATAAACAGTTTGAAGCGGGCACGTGCATGCAATGTTGGAGCCACACCCGGTGTAACCAAGTGCCTTCAGGAAATACACTTGGACAAGCACATCAAGCTTTTAGATTGTCCCGGCATTGTAATGGCAACCTCGACGACTGACGCGGCCATGATCCTTCGGAATTGTGTAAAGATTGAGCAGCTTGTAGACCCTCTACCTCCAGTCGAAGCCATCTTAAGACGCTGCAATAAGACACAGATCATGGAACACTATGGTGTTCCAGACTTCCACACAGCTCTCGAATTCCTGGCTTTGTTGGCACAGCGACAGGGCAAGTTGAGGAAGGGAGGACTGCCTGATAATGACAAGGCGGCAAAGAGTGTCCTAATGGACTGGACAGGgggtAGGATCAGCTACTTTACACACCCTCCGGAGACGCACACTCTTCCCACTCATATCAGTGCTGAGATTGTGGCAGAGATGGGCAAAGCTTTCGACTGGGAGGAACTAGAGAAGGGAAACCAGGAAGTGCTAGCTGTGTCGTCTTGCACTGATGTCCAAATGGGTTTCTGCATGGCAACTGCTGGGATGACTCAGGGTGGTCAAGAAGAACCACCTTGTGACCTGGAAATGGAAGGTGGAGCTTTGGATGGGGTTGAGTCCAAGGATGAAACTGAATCCATggatgatgatcaggacccagAGTTTGGACCTATGACTGTGGAGATAAAAGCACCAAGGGCAAAGACTGGTGGTTCAGTTGATGCTGCTGCCCCCAGGACCCTCGATTTAAAGGATATCTGGAATGTAGACCCTCTTCAGCAGGGCCAAGCACTCGTGGCTGctgggaagaagaggaagaagcaaCAGAAAAGAGCTGACAAAATTGCTACCAAACTCTCAGACAGCCTGACGACGGCAATGAACTTTGCATTTTCAGATATATGAAAAATAAAAGGTAATCTAAAA

Function

symbol description
gnl3l Predicted to enable GTP binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Orthologous to human GNL3L (G protein nucleolar 3 like).

NR:

description
guanine nucleotide-binding protein-like 3-like protein

GO: NA

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569748.2 True 1887 mRNA 0.48 15 74877193 74895463

Neighbor

gene id symbol gene type direction distance location
LOC100135982 LOC100136940 coding upstream 15426 74858914 ~ 74861767 (+)
LOC110493256 LOC106565770 coding upstream 18881 74854126 ~ 74858312 (+)
opn1sw2 LOC100135984 coding upstream 35118 74839548 ~ 74842075 (+)
LOC118940106 NA coding upstream 106940 74768632 ~ 74770253 (+)
LOC110494565 LOC106565774 coding upstream 128074 74746187 ~ 74749119 (+)
LOC110494570 LOC106565767 coding downstream 22801 74918264 ~ 74928441 (+)
cxxc1b LOC106565764 coding downstream 42305 74937768 ~ 74943605 (+)
mbd1b LOC106565762 coding downstream 55235 74950698 ~ 74968199 (+)
ccdc120 LOC106565760 coding downstream 72894 74968357 ~ 74997618 (+)
LOC110494575 LOC106565759 coding downstream 104613 75000076 ~ 75014313 (+)
G1487778 NA non-coding upstream 1804 74875182 ~ 74875389 (+)
G1487771 NA non-coding upstream 5350 74871620 ~ 74871843 (+)
G1487650 NA non-coding upstream 89847 74787058 ~ 74787346 (+)
G1487644 NA non-coding upstream 104410 74772561 ~ 74772783 (+)
G1487640 gata1 non-coding upstream 113574 74752759 ~ 74763619 (+)
G1487790 NA non-coding downstream 3970 74899433 ~ 74899684 (+)
G1487809 NA non-coding downstream 34219 74929682 ~ 74929897 (+)
G1487813 NA non-coding downstream 49436 74944899 ~ 74945117 (+)
G1487838 LOC106582872 non-coding downstream 112003 75007466 ~ 75012176 (+)
G1487973 NA non-coding downstream 143534 75038997 ~ 75039259 (+)
LOC110493252 LOC106565788 other upstream 468004 74388428 ~ 74432420 (+)
G1486811 NA other upstream 897758 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1595174 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1751837 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1831605 73044346 ~ 73049958 (+)
G1490016 NA other downstream 1788136 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3112827 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3122905 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3293549 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3357166 78252629 ~ 78253308 (+)

Expression


Co-expression Network