cxxc1b (LOC106565764)


Basic Information

Item Value
gene id cxxc1b
gene name LOC106565764
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74937768 ~ 74943605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569751.2
ACTTTAAAGAAGAAGAATGTTTGGTCCAACATCCGAGTTCAGCCGATTATTTGATTTCCGGCGTCGTCAACACAGATTGCGACCCTGAGCAGTTATTTAGCTAGGTACTATCGTTGAAGTTTGATCGAGGATTGCAaatacatcacaaatgGACAGTGAAGTGTCAGACTTTGAGCCCGCACCAGGGCTTGAGAGCAGTATGGAGGGCGAGAATGCACCAGTGTACTGCATTTGTCGAAAACCTGACATCAATTGCTTCATGATTGGTTGTGACAACTGTAATGAGTGGTTTCATGGTAACTGCATCAATCTCACAGAGAAGATGGCCAAAGCTATCAGGCAGTGGTACTGCCTGCGATGCCGAGACAAAAACCCATCATTGGAGATAAAATACCGTCCAAAGAAGAGCCGTGAAAAGGAGGCAGAgggccagagagagccagagagaaaatTTGAAAGACAAAACAGCACTCCAGATTATAAATCTGAAAGGCGCCGTGGATCAAAGGTTAAGCGCTCTGCTCGTATGTGTGGAGAGTGCGAGCCCTGCTTGAGGACTGAGGACTGCGCCACATGCGACTTCTGCAAGGACATGAAGAAATTTGGGGGTCCCAACAAAATAAGACAGAAGTGTCGATTTAGGCAGTGTGACGTCCGAGCCAGGAAAATGTTGCGTGTGAAGGATGAAGAGTTTAATTTGCGTGAAAGGCGGGATAATTCCTACCACCGGAGAAGACGATATTCAGACGACTACGATAGTGAGGCAGAACTCTATGAAAAGTACAAGGCAGCGGGATATGACGACAACATGCCATGGCTCAGTGATGAGGATGACGGGCCTCCATTCAGCCCTGTCCTGCGAAAGAAAGCTGTGAAGGTCAAGCATGTGAAGAGACGGGAAAATAAATTTGACAAGAAAAAAGAGTCACGGCGGCACAAACAGAAACAGAAGCACAAGGACAAAGTCAGGCACAGTGATAGGGGCGATGCCAGGGATGGAGGAGGGCAGCGACAGTGCCTCGGGCCCAGCTGTGTGGAAGCTGCACGAGCCAACTCAAAATACTGCTCAGAAGAATGTGGCATGAAGCTGGCTACCAaCCGGCTCTATGAGATACTCCCTCAACGTATCCAGCAGTGGCAGCAGAGCCCCTGCATCGCTGAGGAGCAGGGCAAGAAGCAACTGGAGCGGATCCGACGGGATCAGCAGAATGCACGCATGCGTCTCACTGACATGGAGAAACGCTTCCACGAGCTGGAGGGAATCATTGCTAAGGCCAAGCAGCAGGTAGTCCAGCAGGATGAGGAGACGAATGAAGGGGACAATGAAGAAACAGACCTGATGATTTTCTGTGTGTCCTGCAGTCACCCTATCAACCCAAAGGTGGCACTGCGACATATGGAGAGATGCTATGCTAAGTATGAGAGCCAGACATCTTTCGGTTCAATGTACCCAACAAAGATAGAAGGAGCAACAAGACTCTTCTGCGATGTGTACAACCCCCAGAGCAAGACCTACTGCAAGAGGCTTCAGGTTTTGTGCCCAGAACATTCCAGGGACCCAAAGGTCCCAGGGGATGAGGTGTGCGGCTGTCCTCTAGTTCGTAATGTGTTTGAGGCAACAGGCGAATACTGCAGGGTTTCTAAACGCAAATGTAATAAGCACTACAACTGGGAGAAGCTCAGGAGAGCTGAGGTGGACCTGGAGCGTGTCAGAGTGTGGTACAAGCTGGATGAGCTCTTTGAGCAGGAGCGCAACGTCAGGACTGCTATGACCAACAGGGCAGGTCTACTTGCTCTCATGCTGCACCAAACCATTCAGCACGACCCCCTGACAACGGATCTCCGTTGCAACAAGGACAGATAGCCGGCTGCATCTTCATGTTATTTCTGAGTGGCATTTTCGTACATCTTTGTTAGAGATTTATAGTATCTTTTTGCAGAGACTTTGGATTTTAAGACCTTTGCTGATGTTGAAAAACTGAATATTTGAATGGTAAATGAATATTTTCCTTGTGTCCAGCACTATTGAGGTCTTGTCACTTCTGGTATCTTGCTAATTATAGTCCAAAAATAAAGACTGTGATCAAGCTCTCCTGCAAATGGAAAAACCTTGGTCAAGCCATCTGCGCTgtagaatctgtgtgtgtgtgcatgcactcaCATTATGGTATAGCTGACCCCATTTAGGTGACTGGTCAATTGTTTGTTTGGTAGATTGAAttagtcgagcagtagcaaaAAAATTATTTCATGGGGCACGAATCAGACCGGTGTCTTGTACACGTCTGAGTGGACTGCTCCATTGTGGAGGAcgtggggatggcacagtccatgaAATGTGCTACTGAAATTATATTCGGTTATATTACATAAGAACAATGGTGCAACGCTAATAGCAATTATAATATTAAACAAATGCGCTTTCTCTAGTGTTGAATAGTGGCGCTGTTCACGGTTCAGAAAAATGTCAGTGTGCTCTTGAATTGGCaccttttcctagaccatgttgctatgtgcataatagcagaGTCAACCAGCATACTGGTGTTGAGAAAAATACAGTGGAGGCAGAATGAGATGAGAACAGCCCTTGGCTTATTGTCGAAGAAAAGTGAGGGGAAAGGGAACCCCAACTTAATTAGATCTGCTCAACAGTCTTAACTGTTGAATATGCCTGGCTTCATATATCTACAAAAATAAAacagatcctgcttctgttgcctgtttgagtgtttaatagcctactgattcatTGAGAACCAAGCCTCACAATTACATGTCAAGTAAACAATTTGACAAATTCAgctgtttttaatctttgctttgctgtaataaaggctttacactTTTCA
>XM_021569752.2
TACATGCGTTTTGGTTTGTGTGAATTTCATGGTTAGTTGCCTAACATAGCAATTGTCTAGATTAGTGTCTTCGCATTTGCTAAACCGGCTAATGCTAGCCAACACTTTTAGCAAGCTAACGGTAGCTAGCCAGTCGCAATGGAAATGCAACAGCTTGCCGACTCTTTTCAGACTTTTAGCTTGTTACCGTTTGTTAGTTAAGCATTCGCTATCTGTTTTATGTCTCAGGGTATAGCTAGCGAAGTAGCCATCTGGAATAGCGAGATATAGCTAGCGAAGTTGCCATCTGGAATGcgaaatcatttttttttaaccaacaATAGATTGTATAGTTTGGGCAGACTAGTATGTCCGACTCGACGTAGAATAGACCGTAGTATAATAACTTTAGATATTAATGTTTGCCATCCGATTAGTTGTTTTCGACATAATAATGATGATTAGCCGATCAGATCGAACCTCCAGCGGCATAACGTTACCGAAGTACTGTAACTAGCTTGTACTCTGGAGATCGAGCCTACAGTCCATTGAAATCATGGACAGTGAAGTGTCAGACTTTGAGCCCGCACCAGGGCTTGAGAGCAGTATGGAGGGCGAGAATGCACCAGTGTACTGCATTTGTCGAAAACCTGACATCAATTGCTTCATGATTGGTTGTGACAACTGTAATGAGTGGTTTCATGGTAACTGCATCAATCTCACAGAGAAGATGGCCAAAGCTATCAGGCAGTGGTACTGCCTGCGATGCCGAGACAAAAACCCATCATTGGAGATAAAATACCGTCCAAAGAAGAGCCGTGAAAAGGAGGCAGAgggccagagagagccagagagaaaatTTGAAAGACAAAACAGCACTCCAGATTATAAATCTGAAAGGCGCCGTGGATCAAAGGTTAAGCGCTCTGCTCGTATGTGTGGAGAGTGCGAGCCCTGCTTGAGGACTGAGGACTGCGCCACATGCGACTTCTGCAAGGACATGAAGAAATTTGGGGGTCCCAACAAAATAAGACAGAAGTGTCGATTTAGGCAGTGTGACGTCCGAGCCAGGAAAATGTTGCGTGTGAAGGATGAAGAGTTTAATTTGCGTGAAAGGCGGGATAATTCCTACCACCGGAGAAGACGATATTCAGACGACTACGATAGTGAGGCAGAACTCTATGAAAAGTACAAGGCAGCGGGATATGACGACAACATGCCATGGCTCAGTGATGAGGATGACGGGCCTCCATTCAGCCCTGTCCTGCGAAAGAAAGCTGTGAAGGTCAAGCATGTGAAGAGACGGGAAAATAAATTTGACAAGAAAAAAGAGTCACGGCGGCACAAACAGAAACAGAAGCACAAGGACAAAGTCAGGCACAGTGATAGGGGCGATGCCAGGGATGGAGGAGGGCAGCGACAGTGCCTCGGGCCCAGCTGTGTGGAAGCTGCACGAGCCAACTCAAAATACTGCTCAGAAGAATGTGGCATGAAGCTGGCTACCAaCCGGCTCTATGAGATACTCCCTCAACGTATCCAGCAGTGGCAGCAGAGCCCCTGCATCGCTGAGGAGCAGGGCAAGAAGCAACTGGAGCGGATCCGACGGGATCAGCAGAATGCACGCATGCGTCTCACTGACATGGAGAAACGCTTCCACGAGCTGGAGGGAATCATTGCTAAGGCCAAGCAGCAGGTAGTCCAGCAGGATGAGGAGACGAATGAAGGGGACAATGAAGAAACAGACCTGATGATTTTCTGTGTGTCCTGCAGTCACCCTATCAACCCAAAGGTGGCACTGCGACATATGGAGAGATGCTATGCTAAGTATGAGAGCCAGACATCTTTCGGTTCAATGTACCCAACAAAGATAGAAGGAGCAACAAGACTCTTCTGCGATGTGTACAACCCCCAGAGCAAGACCTACTGCAAGAGGCTTCAGGTTTTGTGCCCAGAACATTCCAGGGACCCAAAGGTCCCAGGGGATGAGGTGTGCGGCTGTCCTCTAGTTCGTAATGTGTTTGAGGCAACAGGCGAATACTGCAGGGTTTCTAAACGCAAATGTAATAAGCACTACAACTGGGAGAAGCTCAGGAGAGCTGAGGTGGACCTGGAGCGTGTCAGAGTGTGGTACAAGCTGGATGAGCTCTTTGAGCAGGAGCGCAACGTCAGGACTGCTATGACCAACAGGGCAGGTCTACTTGCTCTCATGCTGCACCAAACCATTCAGCACGACCCCCTGACAACGGATCTCCGTTGCAACAAGGACAGATAGCCGGCTGCA

Function

NR:

description
CXXC-type zinc finger protein 1-like

GO: NA

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569751.2 False 2852 mRNA 0.46 14 74937768 74943605
XM_021569752.2 True 2260 mRNA 0.48 14 74937948 74942626

Neighbor

gene id symbol gene type direction distance location
LOC110494570 LOC106565767 coding upstream 9327 74918264 ~ 74928441 (+)
gnl3l gnl3l coding upstream 42305 74877193 ~ 74895463 (+)
LOC100135982 LOC100136940 coding upstream 76001 74858914 ~ 74861767 (+)
LOC110493256 LOC106565770 coding upstream 79456 74854126 ~ 74858312 (+)
opn1sw2 LOC100135984 coding upstream 95693 74839548 ~ 74842075 (+)
mbd1b LOC106565762 coding downstream 7093 74950698 ~ 74968199 (+)
ccdc120 LOC106565760 coding downstream 24752 74968357 ~ 74997618 (+)
LOC110494575 LOC106565759 coding downstream 56471 75000076 ~ 75014313 (+)
comtb NA coding downstream 65790 75009395 ~ 75011704 (+)
grm6b LOC106565758 coding downstream 71263 75014868 ~ 75034468 (+)
G1487809 NA non-coding upstream 7871 74929682 ~ 74929897 (+)
G1487790 NA non-coding upstream 38084 74899433 ~ 74899684 (+)
G1487778 NA non-coding upstream 62379 74875182 ~ 74875389 (+)
G1487771 NA non-coding upstream 65925 74871620 ~ 74871843 (+)
G1487650 NA non-coding upstream 150422 74787058 ~ 74787346 (+)
G1487813 NA non-coding downstream 1294 74944899 ~ 74945117 (+)
G1487838 LOC106582872 non-coding downstream 63861 75007466 ~ 75012176 (+)
G1487973 NA non-coding downstream 95392 75038997 ~ 75039259 (+)
G1487979 NA non-coding downstream 99332 75042937 ~ 75043140 (+)
G1488009 NA non-coding downstream 130165 75073770 ~ 75074016 (+)
LOC110493252 LOC106565788 other upstream 528579 74388428 ~ 74432420 (+)
G1486811 NA other upstream 958333 73978890 ~ 73979435 (+)
G1485819 NA other upstream 1655749 73281260 ~ 73282019 (+)
G1485260 NA other upstream 1812412 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 1892180 73044346 ~ 73049958 (+)
G1490016 NA other downstream 1739994 76683599 ~ 76684020 (+)
G1491886 NA other downstream 3064685 78008290 ~ 78008799 (+)
G1491899 NA other downstream 3074763 78018368 ~ 78019816 (+)
G1491963 NA other downstream 3245407 78189012 ~ 78190290 (+)
G1492003 NA other downstream 3309024 78252629 ~ 78253308 (+)

Expression


Co-expression Network