LOC110494583 (LOC107095653)


Basic Information

Item Value
gene id LOC110494583
gene name LOC107095653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75495673 ~ 75513887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569774.2
AGCGGGTATGCTACTTCCTGTAGACATACTTTTGTTTGGCCGAACGGAACAGCTGTCTGGAGGCGGATAGAACCATATCATTAGGAATTAATAGGATCTCTGAATAGAAGTTACTGGTCTTGCTGTACTACTTTTGTGTTCAGTGGCACTCATCAAGATGCTGGCGTTAATTAACAGACTTTTGGACTGGTTTAGGTCTCTCTTCTGGAAAGAAGAGATGGAGCTCACGTTAGTTGGACTTCAGTACTCCGGGAAAACCACCTTTGTCAATGTGATATCATCTGGTCAGTTTAGTGAAGACATGATTCCCACAGTCGGCTTCAACATGCGGAAGGTTACCAAAGGCAACGTGACGATTAAGATCTGGGACATAGGTGGACAGCCTCGCTTCAGAAGCATGTGGGAGAGGTACTGCCGAGGAGTCAATGCCATTGTTTACATGGTGGATGCAGCAGACCGTGAGAAGGTAGAGGCCTCCAGGAACGAGCTCCACAACCTGTTAGACAAGCCTCAGCTACAAGGCATCCCTGTTCTAGTGCTTGGTAACAAGAGAGATCTTCCCAGTGCGCTTGACGAGAAGCAACTCATCGAAAAGTTGAATTTGTCAGCCATCCAGGACAGAGAAATCTGTTGTTACTCTGTTTCCTGCAAAGAGAAGGACAACATAGATATCACTCTGCAGTGGTTAATCCAGCATTCCAAGTCTTGAAGGAGCTGAGTGTAGGTCAAGCCTGCTTCTGTGTCCTCCTTGCTGCCTCTGAAGTGGTTCTCTACCGCCCTGTCTACTCtcaacccaccaccaccacattctGCACCGTTTGTGTAGTCTTCAATTCACCACCACAACACCAACCACTGCTTACACTGCTTAGTCTTTCAGTTGTCACAATACAGTGATGAAGGACAGCGGAGAGTACCTACTCATCATACCTGTTTTCAGTGGAGAAGTTCTACGGGTTTGTGTCCATCCTTTGGTTTTAACGCTACTAACTGGGTTCAGGGAGTCTCATGACCTCCCAGCCCACTGGCATCATATCAGTTTGACTCTGTATTTAGGTGGTGGAATCCAGTCTCTTCATTCAGTATCTACTCCAGTTCAATGTCCCCATTTGGTGTCAATGTAATATTGTTTGATTATAATTAAGGTTTTTGCCAAAACACGTCGCATGTGTGAATGCCTTTATATCCTGACacactgtgatatatatatatataatgtacgTTAATTGATTTGCTGGTCAATGGACATATTTAATGATGTATTTTATGAAGTGGCTTACAGTTTACATGACATGGAAAGTAAGACTGTATGCAATGCTGTAGTCTTGAGCTCAGTCCTAAAAGGGGTCTGCAGAGTTTTAAGTGCCTTCTGCAAATTAGCTTTTCATGCAAGAAGATGATCCTCACACCATACAGATATGCTGTACATAATGAATGTTTTGATTTTTGACCCACGTCATTTACTTAGTTGTCTCTGGACATGTTCATTCAACTCTGTAGAATCCCACGTTATTTAATGCACTTGTGTAAATATGCTTCAATAATGAAAAGTCATTGATGTAAATAGGATGAAATGTAGCTTGATTTGAAGGGGAAGCAGAAAAACTGGAAGTTCGCCACATTTTGTGAAAGATGAATAATAATGATACTTTTCAGGTTGTAACTGCTTTTTGAGTGTCTGTCTCATTGGTTACTCTTGAATATCAAGCCCACAGAGGGTCATTAtaattaaattgatcagaaagcCAGCCAGTGTTACTCATGGAGGAGGTTATGGCAGACGTCACTCAATTCCTCACAATGATGATCAGTCTCCCTCATCTGTTGTCTGAGACCGTTTTACATGGATGCTTTGTCATCTCTAAGCTTTTGCTTGAATAATGATGTATTTTGTGAAGCCTTACTGATCCAAGGAAAATGCTGCAAGCCACAAGATGTCACTTGTCTTAGTTTCACATGTTATATTAAAGAGTCATTATCAGTTCTA

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 8B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007059 chromosome segregation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005819 spindle cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569774.2 True 1987 mRNA 0.42 7 75495673 75513887

Neighbor

gene id symbol gene type direction distance location
LOC110494581 LOC106565754 coding downstream 124280 75273355 ~ 75371393 (-)
LOC110493257 LOC106565925 coding downstream 456764 75035296 ~ 75038909 (-)
LOC110494567 LOC106565771 coding downstream 687140 74792739 ~ 74808533 (-)
LOC110494566 gata1 coding downstream 730199 74752299 ~ 74765474 (-)
LOC110494563 LOC106565776 coding downstream 779992 74713645 ~ 74715681 (-)
LOC110494584 LOC106565752 coding upstream 3845 75517732 ~ 75521544 (-)
LOC110494585 LOC106565749 coding upstream 14629 75528516 ~ 75671855 (-)
setmar LOC106565748 coding upstream 173398 75687285 ~ 75693317 (-)
lrrn1 LOC106565747 coding upstream 209993 75723880 ~ 75736776 (-)
LOC110495193 LOC106565942 coding upstream 370297 75884184 ~ 75885838 (-)
G1488569 NA non-coding downstream 12884 75482395 ~ 75482789 (-)
G1488562 NA non-coding downstream 21777 75473684 ~ 75473896 (-)
G1488556 NA non-coding downstream 29779 75465648 ~ 75465894 (-)
G1488553 NA non-coding downstream 32960 75462496 ~ 75462713 (-)
G1488467 NA non-coding downstream 77077 75418390 ~ 75418596 (-)
G1488707 NA non-coding upstream 10466 75524353 ~ 75524808 (-)
G1488716 NA non-coding upstream 162481 75676368 ~ 75676824 (-)
G1488715 NA non-coding upstream 164883 75678770 ~ 75679204 (-)
G1488799 NA non-coding upstream 166045 75679932 ~ 75680213 (-)
G1488803 NA non-coding upstream 180119 75694006 ~ 75694287 (-)
G1488266 NA other downstream 231450 75263720 ~ 75264223 (-)
G1487872 NA other downstream 595926 74899391 ~ 74899747 (-)
G1487599 NA other downstream 788064 74707345 ~ 74707609 (-)
G1487454 LOC106565788 other downstream 1071788 74422647 ~ 74423885 (-)
G1487442 NA other downstream 1085683 74408968 ~ 74409990 (-)
G1488708 NA other upstream 11295 75525182 ~ 75525596 (-)
G1490147 NA other upstream 1182909 76696796 ~ 76698096 (-)
G1491128 NA other upstream 1968054 77481941 ~ 77482389 (-)
LOC110493260 NA other upstream 2573716 78086079 ~ 78088852 (-)
LOC110494620 LOC106565713 other upstream 2701112 78214999 ~ 78389849 (-)

Expression


Co-expression Network