LOC110494584 (LOC106565752)


Basic Information

Item Value
gene id LOC110494584
gene name LOC106565752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75517732 ~ 75521544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950677.1
AGGGTTTATTTAACACGTAGACCAAACCACCCCTCTATCACACATTTACCCGGGAGTAGAGCATCTGAACTATTGCTGTGCTTGGATCTCAGAGTGACAACATCACATTGACAGTCTCTGCAAAGCAATAGCCTGATGAAATAATATTCTTTATAGAAAAAGTGTTCACTATTGAataaaataacataacaataatttTAGCAGTAAGAACAAACTTTTTTTCTCTCAGATGGCAGTATTAGCTGAATATTGAAAGACAACTGAAGCCTAGTTTTAATATTGAATTGTTTTGATACCAATATTTGGATTTCATAAAGACGCAAAATGGAGAGGATTACAAGTGCGCAACCTCCTCCTTGTATGGCAAAACACCAGTCGCAGGAGATGGCAGACATGCAAGGAAAAGATTTCCCAAAGTACGTGTGCAAACACCGAAAGGGAATGAAGCGCGTGGAAGACAGTAAGGAGACATACAAGTTACCCCACCGATTGATTGAGAAGAAAAGACGTGACAGAATCAATGAATGCATTGCCCAACTGAAGGATTTATTGCCAGAACATCTCAAACTCACAACTCTAGGCCATTTGGAGAAAGCTGTGGTGTTGGAACTCACCCTGAAGCATGTGAAAGCCCTGAGCACTCTCCTGGAACAGCAGCAGCAGAAAATCATTGCATTTCAAATCAGGGATCAGAGCAGTGTTAGCTCAGAGAACAGTGAGGAGATGTTCCACTCTGGCTTCCATGTCTGTGCTAAGGAGGTCCTCCAGTACCTGGCTAACCAGGGGAGCAGCAGAGACCCCCTGACCTCCTCTGAAATGATCAGCCACCTCCACAAAGTAGCATCAGAGGTGCTCCAGGGTCCATTCAGCCCCCAGTCCGAAGAACCCACCCACAAACCCATCGATAGCATGGAGAAGCCTACTGGTCAGATGCCTAAGGGCAAGGAGGGTCACCCCAAGAACTTTGTGTCTGTCATTCAAAGGACATACCCCCACGGACATGGAGAGCAGAGTGGCAATGACACAGACACTGACAGCGGCTATGGAGGGGAACACGAGAAACGGGACCTCAAAGCCCAACGCTCAAGCTACTACAGCAAGGAGGGGGAGCTCAAATATGCTCTGGCTGAGAGGATGGCAGGAGGTGGCGTCAAGCAGGAGGGTGCTGAGCCCCAGGCCAAGAGGTTAAAATCTGACTACTCAGAGGACGAGTCTTCCTCTGGGCAGGTGGTTAGCAGCCATCACAGCTACATGAGCTTCTCCCAACACCAGACCCCCCTCTGCGTGCCCTTCTACCTCATCCCCCAAGCAGCTGCATCGTGGCCCATGATGGAGAAGTGCTGGTTCCCAGGGGGCATGCCCTTTTTGTACCCGGGCATGAATGTCTCAGCAGCCAGCTTGTCTCCAGAGAAAATACCTAAAAACTTAGTAATGTCTCCCAGGGCAGGTTCCCCGACACTCTACCAAGCACCCATGGACTCACCAGCCCTCCTTCAAGCTTTAAAACGCCCCCCCATGAACTTGGAATCCAAAGACTGATACACTTTTGTGTTTGCACCCTGCTCTATGAATGTTTGGGGTTGAACGGATCGCCTGCTGGAAGGCGTCCAGGTTAGCAAGGACAAACACGAGAGCACCAGTTTGTctccctcagcaacagcagccCACACTCTCCCTTTGAGAGCAAACAACAACTGTCACGCACAAACCCAGTGGCCACAACCCTCCAAACCAGCCCACAGATCAACCTTGGAGCCAGTTAGCACTGAAGCTCTGACCCTATGGAGGATCACAGATGACCTGTTGCAAAGCTCTGAGTCACTGTGAAGAGCTGGTCAACACAAGGACATGATAAAAGTGGTTAAGAGAAGGACTTACTGTGGGGATGGCTTCCCTGCACTTGTGTTGAATGTCCGAGTTAAACATGGAGATGAGCAGACAGCACAGCCCCCAGCCATTCAGACCTGCCCTTTGCACACACACCGGTCTGTATTGATTGTAAGAATTTAACAAAACCCCTGTAGATGCTGCTTGAGGTTCTATGTGTTTTAGACGTGCGACCGGAGGATCCACATTTTCTGCATCTGTAACTGCTGAAACTGCAACGGACCCGCCTTTAGACCAGAACGCTACCAAATACGTCTCTGGTTTATGTTGACCAGGGTTGTCACAAAATCCATTGCTCCCTCTTCACCCACCAAGTGTACGCTACATTGCAGCTAAATGGACTCCACTGGATTTTATTCTTTAGAAAAAGTCAGGATGGTGTCACCGGACCTGATATGTGTCACTCATGTAAATAGAGGAGTGATGCATTCAGTTATGCATTTTAGTTTTGAGTTTGTAAGTCGCTACCATTCGTGCAAGTAGTTCTTGTGAGGTAATGTCTTGTAATTATTTTGTTTATACTACTTGTACATCTCTATTTTTGATACATGACCTATAGAGTGTATTTGCATTGTAACTAGAGGGAGGGAATTTTAGATGGCCATTTTGCTGTTTGCCAAGAGAACATGTACATAGCATTGTGCTAAACCTGATTTGCATCATGCTCATTATTCATTTCGGGTCTGGTCAATTTCTGGCCTGTTCGTAGTTCATGCTTGATTTTGCTTAAAGCAGACAAATTATGGCAGATGCCTAAATGTATTTGTATCAATTATTGAGGCTGTGTCAAAGAGAGGAGAATGAATGTAATGCTACAGCAAAATGTTAGTTTTGTATAGGATAAGGTACTTGGGATTTTCATTTTGGGACATAACAGAAGGTTGCTTGTTGTACATATTTTGTCTATAAAGTATTGTTTACATAAAGTTTTTTTTCGGTGGAAATAAGA

Function

NR:

description
LOW QUALITY PROTEIN: class E basic helix-loop-helix protein 40-like

GO: NA

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950677.1 True 2836 mRNA 0.46 6 75517732 75521544

Neighbor

gene id symbol gene type direction distance location
LOC110494583 LOC107095653 coding downstream 3845 75495673 ~ 75513887 (-)
LOC110494581 LOC106565754 coding downstream 146339 75273355 ~ 75371393 (-)
LOC110493257 LOC106565925 coding downstream 478823 75035296 ~ 75038909 (-)
LOC110494567 LOC106565771 coding downstream 709199 74792739 ~ 74808533 (-)
LOC110494566 gata1 coding downstream 752258 74752299 ~ 74765474 (-)
LOC110494585 LOC106565749 coding upstream 6972 75528516 ~ 75671855 (-)
setmar LOC106565748 coding upstream 165741 75687285 ~ 75693317 (-)
lrrn1 LOC106565747 coding upstream 202336 75723880 ~ 75736776 (-)
LOC110495193 LOC106565942 coding upstream 362640 75884184 ~ 75885838 (-)
trnt1 trnt1 coding upstream 364586 75886130 ~ 75891233 (-)
G1488569 NA non-coding downstream 34943 75482395 ~ 75482789 (-)
G1488562 NA non-coding downstream 43836 75473684 ~ 75473896 (-)
G1488556 NA non-coding downstream 51838 75465648 ~ 75465894 (-)
G1488553 NA non-coding downstream 55019 75462496 ~ 75462713 (-)
G1488467 NA non-coding downstream 99136 75418390 ~ 75418596 (-)
G1488707 NA non-coding upstream 2809 75524353 ~ 75524808 (-)
G1488716 NA non-coding upstream 154824 75676368 ~ 75676824 (-)
G1488715 NA non-coding upstream 157226 75678770 ~ 75679204 (-)
G1488799 NA non-coding upstream 158388 75679932 ~ 75680213 (-)
G1488803 NA non-coding upstream 172462 75694006 ~ 75694287 (-)
G1488266 NA other downstream 253509 75263720 ~ 75264223 (-)
G1487872 NA other downstream 617985 74899391 ~ 74899747 (-)
G1487599 NA other downstream 810123 74707345 ~ 74707609 (-)
G1487454 LOC106565788 other downstream 1093847 74422647 ~ 74423885 (-)
G1487442 NA other downstream 1107742 74408968 ~ 74409990 (-)
G1488708 NA other upstream 3638 75525182 ~ 75525596 (-)
G1490147 NA other upstream 1175252 76696796 ~ 76698096 (-)
G1491128 NA other upstream 1960397 77481941 ~ 77482389 (-)
LOC110493260 NA other upstream 2566059 78086079 ~ 78088852 (-)
LOC110494620 LOC106565713 other upstream 2693455 78214999 ~ 78389849 (-)

Expression


Co-expression Network