arl6ip5a (LOC106565746)


Basic Information

Item Value
gene id arl6ip5a
gene name LOC106565746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75891607 ~ 75895493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569796.2
GGTAGCCTCTGATCAGACCATTCATTGATCTATGGGTTCTACAGGGTGGTACTTCGAAAGCTATCGCGAGAAActgaacatttttttatttagtgACTCTTGAATCTGATATTCTGTTTGCTGTAGCCTACAACAAGCCGAGTCATTATATTATACACTCTTCACACAGTAGCCACATGGCTAGGGTAGAACTCACACCGCTGAAACCCTGGGACGATTTCTTCCCAGGTTCCGACCGATTTGCTAAACCAGACGCGAGAGATTTACCTAGATGGAACAACAGGGTTGTCAACAACTTGCTTTATTATCAGACAAACTATTTTGCAATGGCTATCATTGTTTTCCTTATTGTGGGGTTTCTCAACCCTATGGGGATGTTCATGGGCATGGCAGTGGTGTCGCTGGTCTTCCTGGGCTCAGTGTGGGCTGGAGAGAATAAGGCCATGATCAAAGACTTTAAGAGGCAGAACCCCACATTATTTGTCATGGCAGTGATGGTAGCCAGCTACTTTCTTATGTCTCTCTTCGATGGTGTCATGGTGTTCATGTTTGGGATCACATTTCCTATTCTCTTGATCTTTGTACATGCCTCACTTCGACTTCGCAACATGAAGAATAAACTGGAGAATAAGATAGAGGGGGCGGGGCTGAAGAAGTCACCAATGGGTATTCTACTGGAGGCGCTGGGCCAGCAGGAAGAGAGCCTTCAGAAGATCCAGGAGTTCCTTGAGGGGAAACCCAAGGAAGGATGAACTCTACACAGAAAACCAACAACACACACGCCACAGTCCCTATGTTGTCATAGGTCCCCTATCACATCCCTGGCCTCTGATTAATGGGAACGCGTTCCTTTGCACACCCCCTTTAAGGTGCAGTCTCAATGCACTCAATCAAAGTTGGATAGAAATCATTGTAATACATGTTTGAACACTTCAGCTACAAACCGTATAGCCTATCTCGCATGCAGGTATATGTGTATTTGTTGGTTTATTCTAGAGAACATGTGTTGAAAACCAAAGCTTTAATTTTACTTCAGAATATTTGTTACTCCACCCAGAACTTGTCAGAACCCTTCTTTCAAGTAGTGATGACAGCATCTTGATACTGGCTCACATCCTTGCTATGCAATGTTGCAAATTACTATTCCTTGTtgaatgtatttgtgtgtgtaggtgggcaAATGTTTCCAAATCCCACATGCAATATTTACACAACCTGTTCATGCTTTGTGACTTTTGTAAATATAACGAGTGAAAGCATTGTGGTGTTAAAAGCACATCTGTGACCTGACAGATTGAGGTCACTTGGTttgaaaaaataaacaaacagaaCTATGTTTTATTGTTCCATGAATGAATTCAGTTCTCGCAAATGAAGCGGTAGTGAATTAGGTTTTTTAAACGCTGTGGATTCTCTCTCTGAAGTGTATACAAACATTGTAATGTGAAAATTCTGATTTGTGGAGAGTAGAACTTTACTACCTTTATTTCTAAGCTTtactacttttttggttaccgtCTTCAAAGGATCTGAATTATTTAATTTATGCATAATTATTTTCAAATAAGAGAATCTGACAGGCTTGCCTATGAGAGGCTGTGAAATCACTGTGGATGATTAATTATTGTGTAAAATAAATATATCACTGCCAAACTATTCTGAAGGCAAGAGAGTATCAAGTGTTTTATTTTGTACAGGGTGTTTTTCCTCACTAAATTCGAAGGTGTATTTAACTGCAACATTGGATGGAAAGTAGCCCTACGTTTTACTCTAATAAAATGAGAACCAGACTAAAGAACCAA

Function

NR:

description
PRA1 family protein 3-like

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569796.2 True 1802 mRNA 0.40 3 75891607 75895493

Neighbor

gene id symbol gene type direction distance location
LOC110494580 LOC106565755 coding upstream 631852 75179006 ~ 75259755 (+)
mst1rb LOC106565756 coding upstream 820179 75052878 ~ 75071428 (+)
mon1a LOC106565757 coding upstream 841547 75043905 ~ 75050060 (+)
grm6b LOC106565758 coding upstream 857139 75014868 ~ 75034468 (+)
LOC110494575 LOC106565759 coding upstream 877294 75000076 ~ 75014313 (+)
mitfa LOC106565743 coding downstream 110690 76006183 ~ 76046166 (+)
zgc:113054 LOC106565741 coding downstream 177570 76073063 ~ 76088669 (+)
LOC110494598 LOC106565734 coding downstream 563965 76459458 ~ 76463496 (+)
gxylt2 LOC106565732 coding downstream 744854 76640347 ~ 76657067 (+)
LOC110494602 LOC106565731 coding downstream 767951 76663444 ~ 76673208 (+)
G1489032 NA non-coding upstream 18168 75873205 ~ 75873439 (+)
G1489026 NA non-coding upstream 29864 75861425 ~ 75861743 (+)
G1488986 NA non-coding upstream 50804 75840426 ~ 75840803 (+)
G1488981 NA non-coding upstream 56466 75834656 ~ 75835141 (+)
G1488979 NA non-coding upstream 57067 75834275 ~ 75834540 (+)
G1489073 NA non-coding downstream 52844 75948337 ~ 75988795 (+)
G1489114 NA non-coding downstream 108476 76003969 ~ 76011751 (+)
G1489120 NA non-coding downstream 115799 76011292 ~ 76030817 (+)
G1489388 NA non-coding downstream 246931 76142424 ~ 76143081 (+)
G1489389 NA non-coding downstream 247646 76143139 ~ 76143457 (+)
LOC110493252 LOC106565788 other upstream 1482418 74388428 ~ 74432420 (+)
G1486811 NA other upstream 1912172 73978890 ~ 73979435 (+)
G1485819 NA other upstream 2609588 73281260 ~ 73282019 (+)
G1485260 NA other upstream 2766251 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 2846019 73044346 ~ 73049958 (+)
G1490016 NA other downstream 788106 76683599 ~ 76684020 (+)
G1491886 NA other downstream 2112797 78008290 ~ 78008799 (+)
G1491899 NA other downstream 2122875 78018368 ~ 78019816 (+)
G1491963 NA other downstream 2293519 78189012 ~ 78190290 (+)
G1492003 NA other downstream 2357136 78252629 ~ 78253308 (+)

Expression


Co-expression Network