mitfa (LOC106565743)


Basic Information

Item Value
gene id mitfa
gene name LOC106565743
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76006183 ~ 76046166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950685.1
CTGCAGTGATCCTCTGGACCAACATGGGTTCCCCAAGCCCCCCCAGAGCCCCACAGTGCTCCCCGCAGTGATGTCACGTGTCCTGCTCCACCAGCAGCTGATGCGGGACCAGCTCCAGGAGCAGGACCAGcgggaacagagagaacagagagagaggagcaccagGCACCCCTCACACCATCTCCTGCACCCCAGCTGCCCCCAGACCCCTCCCATCAATGTCACACTGCCCTCCAACCTGCCCACTGTGACCCATGTGCCCATGGAAGTCCTCAAGGTACAGACACAGCTGGAGAACCCCACCAAGTACCACATCCAGCAGGCCCAGAGGAAGCAGGTGAGGCAGTACCTGTCCACAACCCTTGGGGGTAAGCCTGGCAGCCAGGCAGGAAGCCTGCAGTGCCCCAGCCAGCCCCCGGAGCACGGAATGCCCCCCGGCCCAGGCAGCAGTGCCCCCAACAGCCCCATGGCCCTGCTGACCCTCAGCTCCAACTGCGAGAAGGAGATGGATGATGTCATCGATGACATTATTAGCTTGGAAACAAGTTATAATGAGGATATTTTTGGACTTATGGACCCAGGACTCCAGGTTACTAATACACTCCCTGTATCTGGTAACCTTCTGGACATGTATGGAAATCAAGGGCTTCCCCCAAATGGACTTGCCATCAGTAACTCCTGCCCTGGTAGCTTATCCAACATCAAAAGGGAATTCTCAGCTCCTGGCATGATGCACGTACTGGACAATACTGGATCCTATGGCCAGTTTGACAACTACCAAAGGCCTGAGGGCTTTCCAGTTGAAGCTGAGGTTCGAGCGATGGCCAAGGAGAGACAAAAAAAGGACAACCACAACTTAATTGAACGAAGGAGAAGGTTCAACATCAACGATCGAATCAAAGAGCTTGGAACCCTGATTCCTAAGTCTAATGATCCGGACATGCGCTGGAATAAGGGCACCATTCTGAAGGCCTCAGTGGACTACATCAGGAAGCTGCAGAGGGAGCAGCAGAGAGCCAAGGAGGTGGAGCTTAGACAGAGAAGGCTGGAGCATGCCAACCGCCATCTGATGCTGCGCATACAGgAGTTGGAGATGCAGGCGCGGGCTCATGGTCTTGCAATTCTGCCGTCGTCTTCCCTCTGCTCCTCTGAGCTGATAGCCCGAGCCATCAAGCAGGAGCCCATCTTAGGAGACTGTCCCTCAGACCTGTATCAGCAGCCAGGTCCCGACATGTCCCCTCCCACCACACTGGACCTCAACAACGGTACCATCCACTTTAACGACAGCCCTGTGGATGCAGGTGACCCAGGGGCATATGGCTCCAGCAAAGCATCCACTAAACTGAAGGACATTCTaatggacaacaccctgtcgccCATATCATCCAATGACCCCCTTCTGTCCTCAGCTTCCCCAGACACctccaacagcagcagcaggcgtAGCAGCAGCTCAAGCATGGAGGAGAATGATCATGGTTGTTAGCACTGCCCACAAGCTCAAATCACACTGACATTTTATAAAGTAGCATTGTTATTACTGGAGCCAACGCTAGGTGCTGCTATGGCCTATTCCTTGAGATAAAGACAGTGGGATTTTCCCTCCCATTGTGTTCAGaagttttgtcttttgtttttgtttgttttacaataTTGTGTCTCTTTCTGGAATCAAATCTGGTTGTTCAGATTAGGCTACCCTACCTAAGGTGACTGCTGAGATTTCACTGTACTGTAGCGTTCACTTTtcatgttaattatttgacaggAAGTGCACAATAACATGGCAATAATGTATTTTATGTGTaatattttgatatttttttcaTATCATGACCATTTTTTGAATTAGTTTAAACATTTGTTTTGTGAGATATcatagagaaatatatatttagTTGAATACTTAAATGAACTGATAATAACATTTCACCAAGATTTTAAGATGAGATAAGACACATTTTTACCCTTAAATTTAGAAGCAATGGTTTGAAACCTACAATATTATTTGCGACTAGAAACAACTTTCAGGAACAATGAATACAATTTGAATGAATACAACCTGTTGATGAATTTTGTTTCCGACGTGGTGATATCTAAAGTGAAGATATTTGTACAAAacaacactgtaaatatactTATTTTGTGATTTAGTTTTTTGAAGTAGGCCTTTAATTAAGTATTAAATTGAAAGTgaattcattttatttttattcccTTGGCTATCTCAACCATATCATTTAGATCGTTGCTCTTACCCCATAGAAAGTTGTAATGCACATGAAGATAATATTTTGTCCAGGTCAAACCAATGACACATATTTAGCTCAGAAGGAGCTCCTGCGACCATTGTTTTTGAATGTCAGACTGCTGAATTACTATCCCTAATATAACTTTATGATGACTAATATCaattcctaatataact
>XM_036950686.1
GCAGTGATCCTCTGGACCAACATGGGTTCCCCAAGCCCCCCCAGAGCCCCACAGTGCTCCCCGCAGTGATGTCACGTGTCCTGCTCCACCAGCAGCTGATGCGGGACCAGCTCCAGGAGCAGGACCAGcgggaacagagagaacagagagagaggagcaccagGCACCCCTCACACCATCTCCTGCACCCCAGCTGCCCCCAGACCCCTCCCATCAATGTCACACTGCCCTCCAACCTGCCCACTGTGACCCATGTGCCCATGGAAGTCCTCAAGGTACAGACACAGCTGGAGAACCCCACCAAGTACCACATCCAGCAGGCCCAGAGGAAGCAGGTGAGGCAGTACCTGTCCACAACCCTTGGGGGTAAGCCTGGCAGCCAGGCAGGAAGCCTGCAGTGCCCCAGCCAGCCCCCGGAGCACGGAATGCCCCCCGGCCCAGGCAGCAGTGCCCCCAACAGCCCCATGGCCCTGCTGACCCTCAGCTCCAACTGCGAGAAGGAGATGGATGATGTCATCGATGACATTATTAGCTTGGAAACAAGTTATAATGAGGATATTTTTGGACTTATGGACCCAGGACTCCAGGTTACTAATACACTCCCTGTATCTGGTAACCTTCTGGACATGTATGGAAATCAAGGGCTTCCCCCAAATGGACTTGCCATCAGTAACTCCTGCCCTGGTAGCTTATCCAACATCAAAAGGGAATTCTCAGCTCCTGGCATGATGCACGTACTGGACAATACTGGATCCTATGGCCAGTTTGACAACTACCAAAGGCCTGAGGGCTTTCCAGTTGCTGAGGTTCGAGCGATGGCCAAGGAGAGACAAAAAAAGGACAACCACAACTTAATTGAACGAAGGAGAAGGTTCAACATCAACGATCGAATCAAAGAGCTTGGAACCCTGATTCCTAAGTCTAATGATCCGGACATGCGCTGGAATAAGGGCACCATTCTGAAGGCCTCAGTGGACTACATCAGGAAGCTGCAGAGGGAGCAGCAGAGAGCCAAGGAGGTGGAGCTTAGACAGAGAAGGCTGGAGCATGCCAACCGCCATCTGATGCTGCGCATACAGgAGTTGGAGATGCAGGCGCGGGCTCATGGTCTTGCAATTCTGCCGTCGTCTTCCCTCTGCTCCTCTGAGCTGATAGCCCGAGCCATCAAGCAGGAGCCCATCTTAGGAGACTGTCCCTCAGACCTGTATCAGCAGCCAGGTCCCGACATGTCCCCTCCCACCACACTGGACCTCAACAACGGTACCATCCACTTTAACGACAGCCCTGTGGATGCAGGTGACCCAGGGGCATATGGCTCCAGCAAAGCATCCACTAAACTGAAGGACATTCTaatggacaacaccctgtcgccCATATCATCCAATGACCCCCTTCTGTCCTCAGCTTCCCCAGACACctccaacagcagcagcaggcgtAGCAGCAGCTCAAGCATGGAGGAGAATGATCATGGTTGTTAGCACTGCCCACAAGCTCAAATCACACTGACATTTTATAAAGTAGCATTGTTATTACTGGAGCCAACGCTAGGTGCTGCTATGGCCTATTCCTTGAGATAAAGACAGTGGGATTTTCCCTCCCATTGTGTTCAGaagttttgtcttttgtttttgtttgttttacaataTTGTGTCTCTTTCTGGAATCAAATCTGGTTGTTCAGATTAGGCTACCCTACCTAAGGTGACTGCTGAGATTTCACTGTACTGTAGCGTTCACTTTtcatgttaattatttgacaggAAGTGCACAATAACATGGCAATAATGTATTTTATGTGTaatattttgatatttttttcaTATCATGACCATTTTTTGAATTAGTTTAAACATTTGTTTTGTGAGATATcatagagaaatatatatttagTTGAATACTTAAATGAACTGATAATAACATTTCACCAAGATTTTAAGATGAGATAAGACACATTTTTACCCTTAAATTTAGAAGCAATGGTTTGAAACCTACAATATTATTTGCGACTAGAAACAACTTTCAGGAACAATGAATACAATTTGAATGAATACAACCTGTTGATGAATTTTGTTTCCGACGTGGTGATATCTAAAGTGAAGATATTTGTACAAAacaacactgtaaatatactTATTTTGTGATTTAGTTTTTTGAAGTAGGCCTTTAATTAAGTATTAAATTGAAAGTgaattcattttatttttattcccTTGGCTATCTCAACCATATCATTTAGATCGTTGCTCTTACCCCATAGAAAGTTGTAATGCACATGAAGATAATATTTTGTCCAGGTCAAACCAATGACACATATTTAGCTCAGAAGGAGCTCCTGCGACCATTGTTTTTGAATGTCAGACTGCTGAATTACTATCCCTAATATAACTTTATGATGACTAATATCaattcctaatataact
>XM_036950687.1
tgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaattgTATAAAACACAAGAAAATCACACTttggactgcactgggcctttaacaaaCTTGTACAATGGTTAAATAAACCTGGAACAAACATATTATTGTGgtttttcatatatatccaaggGCTACAATGTATAAAGGACGATAAAGACAGATTAATTACTGTATAGTGCTACTGGTCAAGCATGTGCCTTGTGGAGTCTTTCTAAGTTGTATTTATGTTTTGCTAAGGGTTCCTTCTTCATTCTCAGTATACACAGTCTTTCTCAGGTAGATCTGATTGGTCAGTGGTGAGGGTGTGGtattagcctttatttaactaaggcAATAGACACTGATATGTGCACAGTCTGCACACACATGTATCTACAttctgtgtgatgttttaaaGAAGTACATTCAAGCAAAACAATACTTTAATGTATGACAACTTGATTACTATGACCTGTGTGAAAGCATGTATGTATAGGCATCCACTGTATGTGCTTAAGGGTGCAAGGAGTGGCAACATAATATACTGTTGACAGGTAGCTAGAGAAGAACTAAATCTAATTACTAATAgttatgtggagagagagagcgatagagagtgagagagagagatgtgtgcaACATCACACGTGTTGGCTCCAGGCATGACGCCTGCTGTATAACTCTAAATTACTGTCCCAGAATAATGGGCCAGCTTTGTTAGAGTAGAATGGTCAGATGTGAGCTCAACATTTATGATAATAGATTTTGGAGGAATGGGTGTTTCTAATGAGGATTTTTGGAACGATTTGTAGATTAAttgttttgatttatttttattctaCATTTTTTGGTTGCATATTCCTCTATACTAAAAATGAATAGTTCTATAAATTAGCTAatattttctttgttttttgcATAGTGGAAATCCCAGTGGGCATATAGACTCACACTTTGCTCATAGCTTCTATACACATGCAGAGACAGGCCAAAACCAGTCAAAACCAATGATCTTTCTATAGAAGGGTGTGAGAGTGAGAATATGCTGTTTATATGAATCTTAACTGAtcatttatatacagtacagttgcCCCTTGTGTTAGATACAACTACTTATattgtctttatttatttatatttgacaTGGTTTTGGAACCATGAATGGCCATGTGTCTTCTGAAAACCAGATATAACAAATGTCACTAAGCAGTGTTGAAATTTATTAGCATACAGGCCTAGTGATCTGGATAAACTATTGAACTTTGGCATAgattaatgttaatgttaatgttcctAATTACACAGTTATATTTGTTTCTGGTAATGTCATATTCCAGAGGTTTCAAGCCAGCAGTGATTCCATTATTGTGCCATGCCTGTGgcacattttttgtatttttaaccCTAGTGGCCTCTTAAGTGGCAGACTAAGTAGGAACTGGCTATGACTTAGTTGATTAGTGGATCCTGGCACACCATTTGCGAACCACTCAGACTAGTGCTTAAATACTTAACACCAAAAGTTGGTAGGGGGATGGACAATCTGTTTAAAAATGCTGCTACATTTTGGAATTTATCTTTTCATATGCTCTGTTTGTAATGGAACAGTGGTGTCAATTGTATTCCGTGTTCTCAGAACAAATTATGTTTTATACTAGATGAGCGGAACTAAAGATGAAACGTTAGTTAGCCGTGAGCGAGTTTCAGTTTGGAGACTAGTAACCCACCAGCAGAAAGGGTCCTTTGTGAGACAGAGATGTTGACGTCAAATGAACCCTGTGAAGACATAAATTCTCAGTTTAACtagaacaacacaacacagggaGGATGAGCCCTGGtatcctccccctgtctcctaaCTTACATAACTCATGAGGGGTTTTCCTTTAATAAGTTCAACCGACCAAGTCTGTCCTCTTATTTTCATGTTAGCCCTGTGTCCACACAGTTGACTGACCAGAACAAGGGAATATCTGATACATACTATCATACAAATTACAATATGTTGGAGATGCTTGAATATAGCCATTACCAGGTACAGACACAGCTGGAGAACCCCACCAAGTACCACATCCAGCAGGCCCAGAGGAAGCAGGTGAGGCAGTACCTGTCCACAACCCTTGGGGGTAAGCCTGGCAGCCAGGCAGGAAGCCTGCAGTGCCCCAGCCAGCCCCCGGAGCACGGAATGCCCCCCGGCCCAGGCAGCAGTGCCCCCAACAGCCCCATGGCCCTGCTGACCCTCAGCTCCAACTGCGAGAAGGAGATGGATGATGTCATCGATGACATTATTAGCTTGGAAACAAGTTATAATGAGGATATTTTTGGACTTATGGACCCAGGACTCCAGGTTACTAATACACTCCCTGTATCTGGTAACCTTCTGGACATGTATGGAAATCAAGGGCTTCCCCCAAATGGACTTGCCATCAGTAACTCCTGCCCTGGTAGCTTATCCAACATCAAAAGGGAATTCTCAGCTCCTGGCATGATGCACGTACTGGACAATACTGGATCCTATGGCCAGTTTGACAACTACCAAAGGCCTGAGGGCTTTCCAGTTGAAGCTGAGGTTCGAGCGATGGCCAAGGAGAGACAAAAAAAGGACAACCACAACTTAATTGAACGAAGGAGAAGGTTCAACATCAACGATCGAATCAAAGAGCTTGGAACCCTGATTCCTAAGTCTAATGATCCGGACATGCGCTGGAATAAGGGCACCATTCTGAAGGCCTCAGTGGACTACATCAGGAAGCTGCAGAGGGAGCAGCAGAGAGCCAAGGAGGTGGAGCTTAGACAGAGAAGGCTGGAGCATGCCAACCGCCATCTGATGCTGCGCATACAGgAGTTGGAGATGCAGGCGCGGGCTCATGGTCTTGCAATTCTGCCGTCGTCTTCCCTCTGCTCCTCTGAGCTGATAGCCCGAGCCATCAAGCAGGAGCCCATCTTAGGAGACTGTCCCTCAGACCTGTATCAGCAGCCAGGTCCCGACATGTCCCCTCCCACCACACTGGACCTCAACAACGGTACCATCCACTTTAACGACAGCCCTGTGGATGCAGGTGACCCAGGGGCATATGGCTCCAGCAAAGCATCCACTAAACTGAAGGACATTCTaatggacaacaccctgtcgccCATATCATCCAATGACCCCCTTCTGTCCTCAGCTTCCCCAGACACctccaacagcagcagcaggcgtAGCAGCAGCTCAAGCATGGAGGAGAATGATCATGGTTGTTAGCACTGCCCACAAGCTCAAATCACACTGACATTTTATAAAGTAGCATTGTTATTACTGGAGCCAACGCTAGGTGCTGCTATGGCCTATTCCTTGAGATAAAGACAGTGGGATTTTCCCTCCCATTGTGTTCAGaagttttgtcttttgtttttgtttgttttacaataTTGTGTCTCTTTCTGGAATCAAATCTGGTTGTTCAGATTAGGCTACCCTACCTAAGGTGACTGCTGAGATTTCACTGTACTGTAGCGTTCACTTTtcatgttaattatttgacaggAAGTGCACAATAACATGGCAATAATGTATTTTATGTGTaatattttgatatttttttcaTATCATGACCATTTTTTGAATTAGTTTAAACATTTGTTTTGTGAGATATcatagagaaatatatatttagTTGAATACTTAAATGAACTGATAATAACATTTCACCAAGATTTTAAGATGAGATAAGACACATTTTTACCCTTAAATTTAGAAGCAATGGTTTGAAACCTACAATATTATTTGCGACTAGAAACAACTTTCAGGAACAATGAATACAATTTGAATGAATACAACCTGTTGATGAATTTTGTTTCCGACGTGGTGATATCTAAAGTGAAGATATTTGTACAAAacaacactgtaaatatactTATTTTGTGATTTAGTTTTTTGAAGTAGGCCTTTAATTAAGTATTAAATTGAAAGTgaattcattttatttttattcccTTGGCTATCTCAACCATATCATTTAGATCGTTGCTCTTACCCCATAGAAAGTTGTAATGCACATGAAGATAATATTTTGTCCAGGTCAAACCAATGACACATATTTAGCTCAGAAGGAGCTCCTGCGACCATTGTTTTTGAATGTCAGACTGCTGAATTACTATCCCTAATATAACTTTATGATGACTAATATCaattcctaatataact

Function

NR:

description
microphthalmia-associated transcription factor-like isoform X1

GO: NA

KEGG:

id description
K09455 MITF; microphthalmia-associated transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950685.1 False 2428 mRNA 0.46 9 76006183 76046166
XM_036950686.1 False 2423 mRNA 0.46 9 76006185 76046166
XM_036950687.1 True 4226 mRNA 0.41 9 76040012 76046166

Neighbor

gene id symbol gene type direction distance location
arl6ip5a LOC106565746 coding upstream 110690 75891607 ~ 75895493 (+)
LOC110494580 LOC106565755 coding upstream 746428 75179006 ~ 75259755 (+)
mst1rb LOC106565756 coding upstream 934755 75052878 ~ 75071428 (+)
mon1a LOC106565757 coding upstream 956123 75043905 ~ 75050060 (+)
grm6b LOC106565758 coding upstream 971715 75014868 ~ 75034468 (+)
zgc:113054 LOC106565741 coding downstream 26897 76073063 ~ 76088669 (+)
LOC110494598 LOC106565734 coding downstream 413292 76459458 ~ 76463496 (+)
gxylt2 LOC106565732 coding downstream 594181 76640347 ~ 76657067 (+)
LOC110494602 LOC106565731 coding downstream 617278 76663444 ~ 76673208 (+)
LOC110494606 LOC106565729 coding downstream 1120709 77166875 ~ 77261192 (+)
G1489073 NA non-coding upstream 17388 75948337 ~ 75988795 (+)
G1489032 NA non-coding upstream 132744 75873205 ~ 75873439 (+)
G1489026 NA non-coding upstream 144440 75861425 ~ 75861743 (+)
G1488986 NA non-coding upstream 165380 75840426 ~ 75840803 (+)
G1488981 NA non-coding upstream 171042 75834656 ~ 75835141 (+)
G1489388 NA non-coding downstream 96258 76142424 ~ 76143081 (+)
G1489389 NA non-coding downstream 96973 76143139 ~ 76143457 (+)
G1489469 NA non-coding downstream 212945 76259111 ~ 76259466 (+)
G1489496 NA non-coding downstream 244964 76291130 ~ 76291342 (+)
G1489839 NA non-coding downstream 449076 76495242 ~ 76495466 (+)
LOC110493252 LOC106565788 other upstream 1596994 74388428 ~ 74432420 (+)
G1486811 NA other upstream 2026748 73978890 ~ 73979435 (+)
G1485819 NA other upstream 2724164 73281260 ~ 73282019 (+)
G1485260 NA other upstream 2880827 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 2960595 73044346 ~ 73049958 (+)
G1490016 NA other downstream 637433 76683599 ~ 76684020 (+)
G1491886 NA other downstream 1962124 78008290 ~ 78008799 (+)
G1491899 NA other downstream 1972202 78018368 ~ 78019816 (+)
G1491963 NA other downstream 2142846 78189012 ~ 78190290 (+)
G1492003 NA other downstream 2206463 78252629 ~ 78253308 (+)

Expression


Co-expression Network