LOC110494594 (LOC106565742)


Basic Information

Item Value
gene id LOC110494594
gene name LOC106565742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76065107 ~ 76074226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569800.2
TCGaggatatatgtatatatacagagaGTAATGAGAGGTGAACATTATGCTCCATTAGGTTACTTGTCTCTGCATCGGTCACTCATTAGCTTCCAATACATAAATATATCAAGATGTCACTTGATGCAAACACTGGGAAGACACATGTGGAAGAGCCACTGGAATGCAACAATATTGCAGTAATAAAGAAGAACGAGTTTCACTTAGTTCAAGTCAAGGGCACATGGAAACGCAAATCGGGAAACAaattgaataaaaatataaaggGTCGAGTATCAGCTGCCAAAATCTATGAGAGCACCATGGAGCAAGGCACCTCCTGGACAGTGGTCAGCCCTATCATCTTCACCTACAAGGTGACTGAGTCCCTGGGCCTGCTGGACCCCAGCAACGACACCCTGCTCCTGGGGCACATTAGGGACCCCCAGCAGCTGGAGGCCCTGAGGAACAGCATCAGCACCAAGCCCCTCAGGCGCTTCGTGGTCATGGACCAGACCGTCTACAACCTCTACGGCTGCCAGCTCACAGACTACTTTGAGGCCCATAATGTTCTCTACAGGATCCTGCCTCTGCCCACCACCGAGGAGAACAAGTCCATGGAGCTGGTGATGAGGATCCTGGAGGAGGTCCATAAGTTCTCCCTGGACAGACGCACAGAGCCCATCATAGCCATCGGAGGAGGAGTCTGCCTGGACATAGTGGGCTTGGCGGCATCCCTGTACAGGAGACGCACCCCCTACATCCGTGTCCCTACCACCCTGCTCTCTTATGTTGACGCCAGCGTGGGGGCAAAGACTGGGGTGAACTTTGCCAACTGTAAAAATAAGCTGGGTGGCTACATACCCCCGGTGGCTGCTTTCCTAGACCGCTCCTTCATTCAAACTGTTTCTCGAAGACACATCTCCAATGGGCTGGCCGAAATGTTAAAGATGGCCTTGATGAAACACAGAGGTCTCTTTGAGCTTCTGGAGACCAACGGCCGGTTCCTGTTGGACTCCAAGTTCCAGTCTGACAGCGGTCTTCAGGGGGACAACAAAGATGCTGCCTCCGTGTCCACACGCATGGCCATAGAAGCCATGCTAGAGGAGCTGGCCCCCAACCTGTGGGAGGACGATTTAGACAGACTAGTAGACTTTGGTCACCTTATCAGCCCAGAGCTGGAAATGAAGGTGCTCCCTTCCTTGCTGCACGGAGAGGCGGTGAACATCGATATGTCCTACATGGTTTATGTGGCCCGTGAGAGAGGCCTcatgacagaggaggagaagctGCGGATTATAGGCTGCATGGGGGGGCTGGAGCTGCCTGTGTGGCACCAGGATGTTACCATGGCACTAGTGCAGCACTCACTTTGTGAGAGGCTGAAACACTCTGGTGGGCTGGTCAGGATGCCTCTACCCATTGGCCTAGGGCATGCAGAGATCTATAATGACACAGGTGATGACACCCTGTACAGAGCGTTTGAGAAGTGGTGTGATGAGCTGCGACCAAGCGACCTGAACTAGTCCAAACATTTTGCATTACTGTAGATTATTTACTTTTAATGATTTAAATGATTAAAACAAGGATGTGGCATTTCTGCTTGACATGTTGGCACAGATATCTAGAATGCTCAACAGTTGTTGTAGCTGATATTTGTTGGTGCTGTTGATTGTTCAGGTTGACTTGATTTGATAGAAAATTGCAAGCGATGTCTTGTCCTATTGAACAATACAGGCCCCTCACAGTTTTACTACTGCATTACAAAAAGGGAAATTCAAAACTTTATCTATGATGACTTTGTATTGCTATTGATGTTTTTGATGTCTCAAATGTTCTCATTAAATCGTTTAAGAAATGAA
>XM_036950688.1
GTTATAAGTGTATGTTCCTAGAGATGCGGTAAAGATGTCAATGGAACTCGACCAAAACCATGGATATGCCATCGAAACGCGTGGGTGAAAGATGCCTTATGCTATGAGAGCACCATGGAGCAAGGCACCTCCTGGACAGTGGTCAGCCCTATCATCTTCACCTACAAGGTGACTGAGTCCCTGGGCCTGCTGGACCCCAGCAACGACACCCTGCTCCTGGGGCACATTAGGGACCCCCAGCAGCTGGAGGCCCTGAGGAACAGCATCAGCACCAAGCCCCTCAGGCGCTTCGTGGTCATGGACCAGACCGTCTACAACCTCTACGGCTGCCAGCTCACAGACTACTTTGAGGCCCATAATGTTCTCTACAGGATCCTGCCTCTGCCCACCACCGAGGAGAACAAGTCCATGGAGCTGGTGATGAGGATCCTGGAGGAGGTCCATAAGTTCTCCCTGGACAGACGCACAGAGCCCATCATAGCCATCGGAGGAGGAGTCTGCCTGGACATAGTGGGCTTGGCGGCATCCCTGTACAGGAGACGCACCCCCTACATCCGTGTCCCTACCACCCTGCTCTCTTATGTTGACGCCAGCGTGGGGGCAAAGACTGGGGTGAACTTTGCCAACTGTAAAAATAAGCTGGGTGGCTACATACCCCCGGTGGCTGCTTTCCTAGACCGCTCCTTCATTCAAACTGTTTCTCGAAGACACATCTCCAATGGGCTGGCCGAAATGTTAAAGATGGCCTTGATGAAACACAGAGGTCTCTTTGAGCTTCTGGAGACCAACGGCCGGTTCCTGTTGGACTCCAAGTTCCAGTCTGACAGCGGTCTTCAGGGGGACAACAAAGATGCTGCCTCCGTGTCCACACGCATGGCCATAGAAGCCATGCTAGAGGAGCTGGCCCCCAACCTGTGGGAGGACGATTTAGACAGACTAGTAGACTTTGGTCACCTTATCAGCCCAGAGCTGGAAATGAAGGTGCTCCCTTCCTTGCTGCACGGAGAGGCGGTGAACATCGATATGTCCTACATGGTTTATGTGGCCCGTGAGAGAGGCCTcatgacagaggaggagaagctGCGGATTATAGGCTGCATGGGGGGGCTGGAGCTGCCTGTGTGGCACCAGGATGTTACCATGGCACTAGTGCAGCACTCACTTTGTGAGAGGCTGAAACACTCTGGTGGGCTGGTCAGGATGCCTCTACCCATTGGCCTAGGGCATGCAGAGATCTATAATGACACAGGTGATGACACCCTGTACAGAGCGTTTGAGAAGTGGTGTGATGAGCTGCGACCAAGCGACCTGAACTAGTCCAAACATTTTGCATTACTGTAGATTATTTACTTTTAATGATTTAAATGATTAAAACAAGGATGTGGCATTTCTGCTTGACATGTTGGCACAGATATCTAGAATGCTCAACAGTTGTTGTAGCTGATATTTGTTGGTGCTGTTGATTGTTCAGGTTGACTTGATTTGATAGAAAATTGCAAGCGATGTCTTGTCCTATTGAACAATACAGGCCCCTCACAGTTTTACTACTGCATTACAAAAAGGGAAATTCAAAACTTTATCTATGATGACTTTGTATTGCTATTGATGTTTTTGATGTCTCAAATGTTCTCATTAAATCGTTTAAGAAATGAA
>XM_036950689.1
GACGAGCCCAATAAATAACTGCAACAGGCGGGGTTATAAGTGTATGTTCCTAGAGATGCGGTAAAGATGTCAATGGAACTCGACCAAAACCATGGATATGCCATCGAAACGCCTATGAGAGCACCATGGAGCAAGGCACCTCCTGGACAGTGGTCAGCCCTATCATCTTCACCTACAAGGTGACTGAGTCCCTGGGCCTGCTGGACCCCAGCAACGACACCCTGCTCCTGGGGCACATTAGGGACCCCCAGCAGCTGGAGGCCCTGAGGAACAGCATCAGCACCAAGCCCCTCAGGCGCTTCGTGGTCATGGACCAGACCGTCTACAACCTCTACGGCTGCCAGCTCACAGACTACTTTGAGGCCCATAATGTTCTCTACAGGATCCTGCCTCTGCCCACCACCGAGGAGAACAAGTCCATGGAGCTGGTGATGAGGATCCTGGAGGAGGTCCATAAGTTCTCCCTGGACAGACGCACAGAGCCCATCATAGCCATCGGAGGAGGAGTCTGCCTGGACATAGTGGGCTTGGCGGCATCCCTGTACAGGAGACGCACCCCCTACATCCGTGTCCCTACCACCCTGCTCTCTTATGTTGACGCCAGCGTGGGGGCAAAGACTGGGGTGAACTTTGCCAACTGTAAAAATAAGCTGGGTGGCTACATACCCCCGGTGGCTGCTTTCCTAGACCGCTCCTTCATTCAAACTGTTTCTCGAAGACACATCTCCAATGGGCTGGCCGAAATGTTAAAGATGGCCTTGATGAAACACAGAGGTCTCTTTGAGCTTCTGGAGACCAACGGCCGGTTCCTGTTGGACTCCAAGTTCCAGTCTGACAGCGGTCTTCAGGGGGACAACAAAGATGCTGCCTCCGTGTCCACACGCATGGCCATAGAAGCCATGCTAGAGGAGCTGGCCCCCAACCTGTGGGAGGACGATTTAGACAGACTAGTAGACTTTGGTCACCTTATCAGCCCAGAGCTGGAAATGAAGGTGCTCCCTTCCTTGCTGCACGGAGAGGCGGTGAACATCGATATGTCCTACATGGTTTATGTGGCCCGTGAGAGAGGCCTcatgacagaggaggagaagctGCGGATTATAGGCTGCATGGGGGGGCTGGAGCTGCCTGTGTGGCACCAGGATGTTACCATGGCACTAGTGCAGCACTCACTTTGTGAGAGGCTGAAACACTCTGGTGGGCTGGTCAGGATGCCTCTACCCATTGGCCTAGGGCATGCAGAGATCTATAATGACACAGGTGATGACACCCTGTACAGAGCGTTTGAGAAGTGGTGTGATGAGCTGCGACCAAGCGACCTGAACTAGTCCAAACATTTTGCATTACTGTAGATTATTTACTTTTAATGATTTAAATGATTAAAACAAGGATGTGGCATTTCTGCTTGACATGTTGGCACAGATATCTAGAATGCTCAACAGTTGTTGTAGCTGATATTTGTTGGTGCTGTTGATTGTTCAGGTTGACTTGATTTGATAGAAAATTGCAAGCGATGTCTTGTCCTATTGAACAATACAGGCCCCTCACAGTTTTACTACTGCATTACAAAAAGGGAAATTCAAAACTTTATCTATGATGACTTTGTATTGCTATTGATGTTTTTGATGTCTCAAATGTTCTCATTAAATCGTTTAAGAAATGAA

Function

NR:

description
uncharacterized protein LOC110494594

GO: NA

KEGG:

id description
K01735 aroB; 3-dehydroquinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569800.2 False 1841 mRNA 0.49 5 76065107 76071743
XM_036950688.1 False 1653 mRNA 0.50 5 76065107 76074194
XM_036950689.1 True 1664 mRNA 0.50 5 76065107 76074226

Neighbor

gene id symbol gene type direction distance location
frmd4ba LOC106565744 coding downstream 76242 75909622 ~ 75988865 (-)
trnt1 trnt1 coding downstream 173874 75886130 ~ 75891233 (-)
LOC110495193 LOC106565942 coding downstream 179269 75884184 ~ 75885838 (-)
lrrn1 LOC106565747 coding downstream 328331 75723880 ~ 75736776 (-)
setmar LOC106565748 coding downstream 371790 75687285 ~ 75693317 (-)
mdfic2 LOC106565739 coding upstream 19390 76093616 ~ 76108409 (-)
LOC110494596 LOC106565737 coding upstream 110150 76184376 ~ 76417448 (-)
LOC110494597 LOC106565735 coding upstream 351116 76425342 ~ 76429173 (-)
LOC110493258 NA coding upstream 390694 76464920 ~ 76467603 (-)
LOC110494599 LOC106565733 coding upstream 471004 76545230 ~ 76572027 (-)
G1489272 LOC106565743 non-coding downstream 22323 76018639 ~ 76042784 (-)
G1489216 NA non-coding downstream 156394 75908514 ~ 75908713 (-)
G1489208 NA non-coding downstream 161593 75903200 ~ 75903514 (-)
G1489207 NA non-coding downstream 162057 75902826 ~ 75903050 (-)
G1489202 NA non-coding downstream 169809 75891721 ~ 75895298 (-)
G1489327 NA non-coding upstream 12531 76086757 ~ 76087659 (-)
G1489826 NA non-coding upstream 403740 76477966 ~ 76478272 (-)
G1489930 NA non-coding upstream 453388 76527614 ~ 76527916 (-)
G1489935 NA non-coding upstream 460176 76534402 ~ 76535041 (-)
G1488708 NA other downstream 539511 75525182 ~ 75525596 (-)
G1488266 NA other downstream 800884 75263720 ~ 75264223 (-)
G1487872 NA other downstream 1165360 74899391 ~ 74899747 (-)
G1487599 NA other downstream 1357498 74707345 ~ 74707609 (-)
G1487454 LOC106565788 other downstream 1641222 74422647 ~ 74423885 (-)
G1490147 NA other upstream 622570 76696796 ~ 76698096 (-)
G1491128 NA other upstream 1407715 77481941 ~ 77482389 (-)
LOC110493260 NA other upstream 2013377 78086079 ~ 78088852 (-)
LOC110494620 LOC106565713 other upstream 2140773 78214999 ~ 78389849 (-)
G1492729 NA other upstream 2398792 78473018 ~ 78475506 (-)

Expression


Co-expression Network