zgc:113054 (LOC106565741)


Basic Information

Item Value
gene id zgc:113054
gene name LOC106565741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76073063 ~ 76088669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037081.1
CGTGGCGCTTGACTTGGTTGAAGGTCAGCTCCATTAGACATAGCTGTGTTATACGGTTTGCGCCCACGTGATGACAGTAAAACGACCCGAAAAAACGTTGTCGCGAAAGGTTTACACAAAAAGTTTGACATCGATAGACAAATCTTACAGGTCAACGGACACGTGGGCGGAACTACTGTGTGGGAAACTAGGAGTTTATTTTGGGGAGTTTCGTAAGCCATCAGTAAAGGACATTTACACAACTGAAACGGGGTTAAGCtatatagatagacagacagctgcTTTGCCAGTCGCCCTTGTGATTTGACAACTTGTTGTGTATTTTGTATTACGAACGCCGTGGAAATTCACCATGCAGGCGGCCAAAGTCTCTGACACCCCGATGGAATTCATGGTGGATTTCTTAAACAAAGCCAAGGAGATAGCAGATAGCACTGCCAACATTCCAGAGGAACTGAGGGTCAACCTACAGAAGGCCCTGGACATAGCTTGTGGTCTGGACGGCTACCTGGAGAAAATGAGCAGCCAGGAAAGTGCACCTCTCGCTGAGCTGTATCAGAAAACGATGGAACACGACTGGGATAAAGTATTCGAGGAGGGCAAGACTCAGTTTCGGCTTCCAAAAGAGTGCATCACTGGGCATGTGGAAGGCCAGACTCTGAAAATGCTGGTTCACATGAGTAAAGCCAAGAGGATCCTAGAGATAGGCATGTTCACAGGGTATGGTGCTCTCTCAATGGCTGAAGGACTGCCCGAGGATGGGTCACTGGTTGCCTGTGAGATTGAGCAATATCTTAAAGAATTTGCTAAGCCCATATTTGACAGGTCTCCACATGGCAAGAAGATAACAGTGAAGATTGGTTCTGCCATGGATAGCTTGAAGGATCTGGCTGCAGCAGGCGAGCAGTTTGACATGGTCTTTATCGACGCAGACAAGAACAACTACATCAACTACTACAAGTTCATCCTGGACCACAACCTCCTACGGCTGAGTGGTGTGATATGTGTGGATAACTCTCTGTTCAAGGCTAAGGTCTACCTAAAGGACACCACTGATGTAAACGGGCTGGCGCTTCGAGATTTTAACCAGTTTGTGAAGAGTGATCTTCGTGTGgagcaggTCATTGTCCCCCTCAGAGATGGCATCAGTATCATCCGCAGAGTACCCATGGCAACAGCATGTGCAGGCACACAGAGCAAGGTAACAGACGATGAGGTATTCCGGGGTTTGAACGGGAGGTCGATCCTGGACCGGATGCGTCTGGATGGCAGGGTGGCCTATGTGACAGGGGCAGGCCAAGGTATAGGCAGGGCGTTCGCACATGCCCTAGGAGAGGCTGGTGCCAAAGTGGCTGTGGTAGACCTGGACCAAGGGAAGGCTGAGGGCGTGGCAGAGGAGCTCACACTGAAAGGGATAAATTGCATTGCGATTACCGCTGACATCAGCAAATCGTTAGAAGTTGAGAGGATGATTGACAGCATTGTGTCCAAATGGGGAGCGATCCAAATAGCATGCAACAACGCAGGGATCAACATGAACTCAGCCAGTGAAGACACCAGTCTGGAAGAGTGGGACCAAACCTTTGATGTCAACTTGAGGGGGACCTTCATGTGTTGTCAGGCTGCAGGTCGTGTGATGCTGAAGCAAGGATATGGGAAGATTATTAACACAGCGTCCATGGCCAGTCTAATAGTGCCCCATCCACAGAAGCAGCTTGCCTACAACACCTCAAAGGCAGGAGTGGTCAAACTGACACAGACACTTGGCACAGAGTGGATTGACAGAGGGGTCCGAGTTAACTGCATCTCACCGGGGATTGTTGACACCCCTCTCATCCACTCGGAGAGTTTGAGGCCTCTGGTGCAGCGCTGGCTGTCAGATATCCCTGCTGGACGACTGGCTCTAGTGACAGACCTGCAAGCTGCAGTGGTCTACTTGGCATCTGACGCCTCTGACTACATGACAGGGCATAACTTAGTCATAGAGGGTGGGCAAAGTctgtggtagagagagggagaagcttAATTTTTCCCACTCTTGGTTCACTCTTGGGAATAGACACCCACCGCAGGTGGCTGGTGGCAcattattatgagccgtcctcccctcatcaGCCTCCTGTGgcgaccactgtgactgatctcCACAGGGAACACTAGAGTAACAGAGATTAGGTCAGAGTGATTACCTCCCTGGTTTACCATTATGTCAGATTGGAGATTATTTTACAGTTTCATATAGTAGTCTTCACataaaagggacatttatttccACACAGTTGTGCTTTCATATCCCTATAATTTTCTTGACAGAAATGCACACTTTGTCGAAAATCCTTTTTACTCCTTCTACATGGTGCTATCCTTTGGACATCTGTGTTTTTATACGGAAACATTTTTCACGCTGGAATCTGTGAGTGACTCTTATAAACAGGTTTTTGACACCATTTGCCCCATCAGAGGTATTTGTTTCGTAAGTGAAAAGTACTTGAAACGGGTTCATAGTTCAAGATTTTAATACACTGAATGCATGCTGCTTTCTACTGTGCAAGTGCAGTACGTACTGGATATTAGATTGTGAAAGATGGGTTGGGCATAGTAGAAAGTACTGAGATGTGTATAACAAGATACTGTACGAAATACAGTCGGTTTATAAAATAAACACTATCAAACTTAATATTGTAACTAATCCTTTCCTTGTGGGGACTACATACTGAACACATAAATATGGTTTCAAAGCTAACTAGACATTCTATGCATATAAATGTGTAATAACTCCCTGTTTGACAGTCCTGGGATGGTTGTGTTTCTCCGGGTACCATAGTGTACCCCCCTCCTTCAGCTCTTCTCTCTCATGGTTTTGCTGATTGGTCCCCCAAGTGGTGCTTACAATCCACATCTTAATTGCTCCCTGTACTGTGCTATGTGCTGCAAAACAATGCTTAAAGGAGGTTAGCTGAGGGCATGGCCTTAGTCACTGCAATTATACCAAAGGAGTGTCCAATTAGCACCATCCATGCAATGAGACGGTGCTTGTTTGTGTGAGAAACTTCTCGCTATTAGTGGCCATACTCAGATTTACATAATGGGGTCCCTTATTAACGGGGCTAGTGAGTGAGAGGATCCCGTTTAGATATGGAAAGATCTGACGATCTCTGCATTTCAGTTGGATTTAATGTAGAAGACATACTAAACCTGCATGGTAGATAGACACAACTTCCTCACAGGACAATATCAGACATTTGATTTCTGTAAACAGTAAATGTAGAATGTATCTAGAATGACCTAATAAACATCTTAATATAACGTGAGTAGAATATTAGTTAGGCATTTCGTCAGATGGCCACAAAGGGGCAGTCTAGAGATGGGGAGCTACAGATATTTGCTGTTCTCTACCTTTCAGTATACAGGATAATCACTGTTTGAATGTGGGGTTATCAAGAACATTATTTGCCATTATCCGAGGGTAGCAACAAAGGGTCTGCTATATGTTTATGTGAGTAAATTATGATTGAAATGACATCTGCAATTCTAGTGTGCAAACAGCTGGACATGGGAATGAATCTGTGTTGAAATGTTGAACAAACGCAATGTACAGTACTTTCAATTAAAATGAAACAAATAGTGACATTT
>XM_021569801.2
GTGGCGCTTGACTTGGTTGAAGGTCAGCTCCATTAGACATAGCTGTGTTATACGGTTTGCGCCCACGTGATGACAGTAAAACGACCCGAAAAAACGTTGTCGCGAAAGGTTTACACAAAAAGTTTGACATCGATAGACAAATCTTACAGGTCAACGGACACGTGGGCGGAACTACTGTGTGGGAAACTAGGAGTTTATTTTGGGGAGTTTCGTAAGCCATCAGTAAAGGACATTTACACAACTGAAACGGGGTTAAGCtatatagatagacagacagctgcTTTGCCAGTCGCCCTTGTGATTTGACAACTTGTTGTGTATTTTGTATTACGAACGCCGTGGAAATTCACCATGCAGGCGGCCAAAGTCTCTGACACCCCGATGGAATTCATGGTGGATTTCTTAAACAAAGCCAAGGAGATAGCAGATAGCACTGCCAACATTCCAGAGGAACTGAGGGTCAACCTACAGAAGGCCCTGGACATAGCTTGTGGTCTGGACGGCTACCTGGAGAAAATGAGCAGCCAGGAAAGTGCACCTCTCGCTGAGCTGTATCAGAAAACGATGGAACACGACTGGGATAAAGTATTCGAGGAGGGCAAGACTCAGTTTCGGCTTCCAAAAGAGTGCATCACTGGGCATGTGGAAGGCCAGACTCTGAAAATGCTGGTTCACATGAGTAAAGCCAAGAGGATCCTAGAGATAGGCATGTTCACAGGGTATGGTGCTCTCTCAATGGCTGAAGGACTGCCCGAGGATGGGTCACTGGTTGCCTGTGAGATTGAGCAATATCTTAAAGAATTTGCTAAGCCCATATTTGACAGGTCTCCACATGGCAAGAAGATAACAGTGAAGATTGGTTCTGCCATGGATAGCTTGAAGGATCTGGCTGCAGCAGGCGAGCAGTTTGACATGGTCTTTATCGACGCAGACAAGAACAACTACATCAACTACTACAAGTTCATCCTGGACCACAACCTCCTACGGCTGAGTGGTGTGATATGTGTGGATAACTCTCTGTTCAAGGCTAAGGTCTACCTAAAGGACACCACTGATGTAAACGGGCTGGCGCTTCGAGATTTTAACCAGTTTGTGAAGAGTGATCTTCGTGTGgagcaggTCATTGTCCCCCTCAGAGATGGCATCAGTATCATCCGCAGAGTACCCATGGCAACAGCATGTGCAGGCACACAGAGCAAGGTAACAGACGATGAGGTATTCCGGGGTTTGAACGGGAGGTCGATCCTGGACCGGATGCGTCTGGATGGCAGGGTGGCCTATGTGACAGGGGCAGGCCAAGGTATAGGCAGGGCGTTCGCACATGCCCTAGGAGAGGCTGGTGCCAAAGTGGCTGTGGTAGACCTGGACCAAGGGAAGGCTGAGGGCGTGGCAGAGGAGCTCACACTGAAAGGGATAAATTGCATTGCGATTACCGCTGACATCAGCAAATCGTTAGAAGTTGAGAGGATGATTGACAGCATTGTGTCCAAATGGGGAGCGATCCAAATAGCATGCAACAACGCAGGGATCAACATGAACTCAGCCAGTGAAGACACCAGTCTGGAAGAGTGGGACCAAACCTTTGATGTCAACTTGAGGGGGACCTTCATGTGTTGTCAGGCTGCAGGTCGTGTGATGCTGAAGCAAGGATATGGGAAGATTATTAACACAGCGTCCATGGCCAGTCTAATAGTGCCCCATCCACAGAAGCAGCTTGCCTACAACACCTCAAAGGCAGGAGTGGTCAAACTGACACAGACACTTGGCACAGAGTGGATTGACAGAGGGGTCCGAGTTAACTGCATCTCACCGGGGATTGTTGACACCCCTCTCATCCACTCGGAGAGTTTGAGGCCTCTGGTGCAGCGCTGGCTGTCAGATATCCCTGCTGGACGACTGGCTCTAGTGACAGACCTGCAAGCTGCAGTGGTCTACTTGGCATCTGACGCCTCTGACTACATGACAGGGCATAACTTAGTCATAGAGGGTGGGCAAAGTctgtggtagagagagggagaagcttAATTTTTCCCACTCTTGGTTCACTCTTGGGAATAGACACCCACCGCAGGTGGCTGGTGGCACATTAATTAGGGAGACggactcatagtaatggctggaatggaatgataTGGAACACTTGGCTTCCATGTGTTTGatttcactccattccagccattattatgagccgtcctcccctcatcaGCCTCCTGTGgcgaccactgtgactgatctcCACAGGGAACACTAGAGTAACAGAGATTAGGTCAGAGTGATTACCTCCCTGGTTTACCATTATGTCAGATTGGAGATTATTTTACAGTTTCATATAGTAGTCTTCACataaaagggacatttatttccACACAGTTGTGCTTTCATATCCCTATAATTTTCTTGACAGAAATGCACACTTTGTCGAAAATCCTTTTTACTCCTTCTACATGGTGCTATCCTTTGGACATCTGTGTTTTTATACGGAAACATTTTTCACGCTGGAATCTGTGAGTGACTCTTATAAACAGGTTTTTGACACCATTTGCCCCATCAGAGGTATTTGTTTCGTAAGTGAAAAGTACTTGAAACGGGTTCATAGTTCAAGATTTTAATACACTGAATGCATGCTGCTTTCTACTGTGCAAGTGCAGTACGTACTGGATATTAGATTGTGAAAGATGGGTTGGGCATAGTAGAAAGTACTGAGATGTGTATAACAAGATACTGTACGAAATACAGTCGGTTTATAAAATAAACACTATCAAACTTAATATTGTAACTAATCCTTTCCTTGTGGGGACTACATACTGAACACATAAATATGGTTTCAAAGCTAACTAGACATTCTATGCATATAAATGTGTAATAACTCCCTGTTTGACAGTCCTGGGATGGTTGTGTTTCTCCGGGTACCATAGTGTACCCCCCTCCTTCAGCTCTTCTCTCTCATGGTTTTGCTGATTGGTCCCCCAAGTGGTGCTTACAATCCACATCTTAATTGCTCCCTGTACTGTGCTATGTGCTGCAAAACAATGCTTAAAGGAGGTTAGCTGAGGGCATGGCCTTAGTCACTGCAATTATACCAAAGGAGTGTCCAATTAGCACCATCCATGCAATGAGACGGTGCTTGTTTGTGTGAGAAACTTCTCGCTATTAGTGGCCATACTCAGATTTACATAATGGGGTCCCTTATTAACGGGGCTAGTGAGTGAGAGGATCCCGTTTAGATATGGAAAGATCTGACGATCTCTGCATTTCAGTTGGATTTAATGTAGAAGACATACTAAACCTGCATGGTAGATAGACACAACTTCCTCACAGGACAATATCAGACATTTGATTTCTGTAAACAGTAAATGTAGAATGTATCTAGAATGACCTAATAAACATCTTAATATAACGTGAGTAGAATATTAGTTAGGCATTTCGTCAGATGGCCACAAAGGGGCAGTCTAGAGATGGGGAGCTACAGATATTTGCTGTTCTCTACCTTTCAGTATACAGGATAATCACTGTTTGAATGTGGGGTTATCAAGAACATTATTTGCCATTATCCGAGGGTAGCAACAAAGGGTCTGCTATATGTTTATGTGAGTAAATTATGATTGAAATGACATCTGCAATTCTAGTGTGCAAACAGCTGGACATGGGAATGAATCTGTGTTGAAATGTTGAACAAACGCAATGTACAGTACTTTCAATTAAAATGAAACAAATAGTGACATTT

Function

NR:

description
uncharacterized protein LOC110494595

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037081.1 False 3633 mRNA 0.45 12 76073063 76088669
XM_021569801.2 True 3724 mRNA 0.45 11 76073064 76088669

Neighbor

gene id symbol gene type direction distance location
mitfa LOC106565743 coding upstream 26897 76006183 ~ 76046166 (+)
arl6ip5a LOC106565746 coding upstream 177570 75891607 ~ 75895493 (+)
LOC110494580 LOC106565755 coding upstream 813308 75179006 ~ 75259755 (+)
mst1rb LOC106565756 coding upstream 1001635 75052878 ~ 75071428 (+)
mon1a LOC106565757 coding upstream 1023003 75043905 ~ 75050060 (+)
LOC110494598 LOC106565734 coding downstream 370789 76459458 ~ 76463496 (+)
gxylt2 LOC106565732 coding downstream 551678 76640347 ~ 76657067 (+)
LOC110494602 LOC106565731 coding downstream 574775 76663444 ~ 76673208 (+)
LOC110494606 LOC106565729 coding downstream 1078206 77166875 ~ 77261192 (+)
LOC110494607 LOC106565728 coding downstream 1246616 77335285 ~ 77448701 (+)
G1489120 NA non-coding upstream 42246 76011292 ~ 76030817 (+)
G1489114 NA non-coding upstream 61312 76003969 ~ 76011751 (+)
G1489073 NA non-coding upstream 84268 75948337 ~ 75988795 (+)
G1489032 NA non-coding upstream 199624 75873205 ~ 75873439 (+)
G1489026 NA non-coding upstream 211320 75861425 ~ 75861743 (+)
G1489388 NA non-coding downstream 53755 76142424 ~ 76143081 (+)
G1489389 NA non-coding downstream 54470 76143139 ~ 76143457 (+)
G1489469 NA non-coding downstream 170442 76259111 ~ 76259466 (+)
G1489496 NA non-coding downstream 202461 76291130 ~ 76291342 (+)
G1489839 NA non-coding downstream 406573 76495242 ~ 76495466 (+)
LOC110493252 LOC106565788 other upstream 1663874 74388428 ~ 74432420 (+)
G1486811 NA other upstream 2093628 73978890 ~ 73979435 (+)
G1485819 NA other upstream 2791044 73281260 ~ 73282019 (+)
G1485260 NA other upstream 2947707 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 3027475 73044346 ~ 73049958 (+)
G1490016 NA other downstream 594930 76683599 ~ 76684020 (+)
G1491886 NA other downstream 1919621 78008290 ~ 78008799 (+)
G1491899 NA other downstream 1929699 78018368 ~ 78019816 (+)
G1491963 NA other downstream 2100343 78189012 ~ 78190290 (+)
G1492003 NA other downstream 2163960 78252629 ~ 78253308 (+)

Expression


Co-expression Network