LOC110494598 (LOC106565734)


Basic Information

Item Value
gene id LOC110494598
gene name LOC106565734
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76459458 ~ 76463496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569809.2
TCGGAAACGATTGAATTTGACAAGCCTTTCTAGACATGGAAAATCATGCCTTGGGAATGCATGAGACAGGATCTAATTATTGAATGATTCCATGTAGCGCCGCAGACTAATGTAGCGCACAGGAGATCGGACAACTGTTTCTGATCCGAGGACGTGGATGAGCCTACATTTAATCTATCTCGACATTAGCCGGCGCTGTTCAGTGTCTCTCCACCTTATCATAATCGATTCAACCTCGTTTGAAAACGTAAAGTGTAGGCTTTTCCTCAAATGCAAACCAACGGTTGTAGTTTATAGATATGCATTAGTTTGTATTGCTGGATGTATTCGTACGCCATGCCTTCGATTGAGTGGACTGAACAGTGGTTTGGCTATAGTCTACCCAACCCTGTTAATTGCGTGCTGAAGAGATGATGACGGCCTGTCCTCcgatgtatgtttatttattcctCAAGACGAACGAGAACCCCAGCATCAGTGGAAATGGAGATGTGTTCTTGAAATGTCTGGCAGTTAAACGGATCCATTTAAGATGGTGTGTGCAAAGACGGCATGTTTCAGAGCAATTTGTTTGCTATCAGCAGAAAATGGAACTACGAACATGGGTGTAGCCTATTTCATATTCAAAACGGAAACGTGTGAGATGAAGGATAACAAGAAAATACATTTCGATGGACCTCAGTCGCTTCTGAAATCAGGCAATGCTTCAAATCCAGGAGAATAATGAATGATATTCTAAAACGGTTAAACCCTAGATGCTGTTCACCGTGAGGTAGTGTAACATAATCGTGCATCATGTTAATTTCTTGCTGGCCAATTTTTATCAATCATTGATAGGCCTACTTCGACCGGGGAAAGCACGACCACTTGATGTGGGGATATAGAATACACGCGCCTTTGACAATAGCTTGGTTACATAGATGGCAAATTCAAGCGAGTTTGGGGAAAGCAGTCCCACACTACATAATTATGCCATCACCGCCTCTGCGGTGAAACTGGCCTCGCTCGGTCTGGTCATTTGCATCAGCCTTTTCGGGAATGCGGCGTTGTCCCTGCTGGTGCTGAAAGACATCTCCCTTCACAAGGCTCCGTATTTTTTTCTACTTGATCTGTGCTTGGCAGATGTAATACGGTCTGCCGTGTGTTTGCCGTTTGTGATGATATCAATCAACAACCGTTCCATCTGGACGTACAGCATTATACGTTGCAAAATTATCGCGTTCCTCTCGGTCCTTTTTTGTTTTCATGTAGCGTTTATGCTCTTCTGCGTCAGTGTAACCAGATACATGGCGATTGCACACCACAGGTTTTATTCCAAACGAATGACATTGTGGACATGTGTGGCAGTGATTTGCATGGTCTGGACCCTCTCTGTCGCTATGGCTTTCCCCCCTGTATTTGACGTTGGCACCTACAAATTCATCCATGAAGAGGAACAATGCATTTTTGAGCACCGATATGTGAAAGCAAATGACACCCTGGGTTTCATGTTGATGCTGGCTGTCATCGTGGGAACAACGCACGTTGTTTACATAAAAATGTTGTGTTTCGTGTACGACCATCGGAAGATGAAACCCGCTCAGCTTGTCCCAGCAATAAGCCAAAACTGGACCTTTCACGGGCCAGGTGCAACTGGGCAGGCAGCCGCCAATTGGATAGCAGGATTTGGACGTGGTCCCACCCCACCAACATTGGTGGGAATCAGACAAACTTCGCATAATGGAAACAGAAGGCTGCTTGTCTTGGatgaatttaaaatggaaaaaCGCATAGGGAAAATGTATTACATGATAACCCTGGCGTTTCTTATCCTCTGGGCCCCGTACATTGTTACTTGCTACATTCGAGTGTTTGTTAAAGGAGGCACAATTCCACAGGTCTACCTGACTGCAGCCGTGTGGATGACGTTCGTTCAGGCGGGGGCGAATCCCATTATTTGTTTCATATTCAACAAGGAGCTGAGATCGCGCCTCAGAGCCAGTTTCCCATGTTGTCTCAGCACACAGACGCCTATGTCTATGGAGCCATACTGTGTCATCTGATAGGTTCTACTGTTGTTTTAGACAAGGGGAAAAGAACAGAACTGTCATGTTGGTTTTGATGCCTTAGGTGATATTACTCTGTTGCTAAGCTTGTCCAATTTTCCCACACAGGCTGGCCATATTTTGTGATTTGCACTTACAGAAAGTGCAAAATGTTGCCAATCTGTATTTCGAATAGGCCTACTAATAATGTTGcatatttgaagaatctcattgGGATATTATTTGAGTAATGTAGGCCTATGGCAATTCAGTTACAAGAGCATAAGACAATTCTGTACATTCTCTAAAGCTGTTTATTTctgaactttaaaaaaaatcaaatatgTTGTAGCTTTCATAAAATCTTCATATAATTATTTGTGTGGAGAAGGTGATAAAACAAACTTTTACAGTCTTTTGCAAATACATTTTCTTCCTGGATTTTAATAACATGTGTTGATAAAAATGTATACCTTGCACATTCCCTGTAAAAAAGACACATGACATGTTTTTTTCTATGGACAAGGACGATGGAACTCTAAAATAAGCAAAGCAtcagtgctgcagagagatgtTTGCAATGTTTGTACTTCTGAGTAAATAAACAACAGATTCATGATTAGTATTGATTTGATTCTGTTATACAGGTAACTGAACAATATCCGTTATGTGTTTCAATCCAATAACGATATAGACACATCCTATTTTCTACCACTCATCCTCAAACGCTAACTGAACAATTGACCATATTTTGTTGTATCATTACCTCCTCTATAGCACAACATGTGGGGGGTTGTATTACCCTGAAACAATAATATAATTATACTAAAATTGGGGTATCTGGGCAGATCATGTTTTCCTTGTGCTCAGCTAACTTGTTACCATACTATTACCATGTTATTACCACTTTATTCTGCACTGTAATGTAAAATGCTACCATCATTCATGTCCCCGAGAATTTAGCAGGCCTTAGAAAGTTTGTGCTTCTGAAAAAGCAGTGCAGCAAGAGTCCAGTTTGCCTCTGCTTACACACTCCATTGTTCTCATAAGACTTTAACTAACCAGCATGCACCTTTCAGTATGTAAAAAATCCAACCGTGTATAATAGAGTCATTATTCTGATCACTGCTCATCTCAGTTACAGGCATGTAAATGAACATTTGTCAGCTAACTGTAGTCCTTAATCTTTGTAGCCCGGGTTGACTTCCCTAGGGGGAAGTGGGATAGAGTGGGAACTGCTGAGCTGATGTTTCTGGGTAGAGCATCCCGGTGTACCTACAGTATACCTACTGTGCACCCTCCTTCCCTGGCCTGGCCCGGCCCAGCATCACTGCATTCATAACCATTACCATCACAACATGCCTGCTCCGCTCTACTCCCAGCATGACTCTGTTGCTTCTGAACGACTGAAACGTTCTCACCTGTGAATTCTCTCATGCAGTATAATTTCAGATCAGACATTTTTTATACAACAGCTCTACCCCAGGAGAACTCTCTCTGCTGCTTTGTTTTGCTTAGAAGTGCCTCTTGAACATTTTTGCATGTACACGGCCATATTGTTGACCCCACATTTGCCTCTGTTAGTTTCTCAGAGGCAGTTTTGCACACCTGAAATATGTTCAAAATGCAATATAACATTTCATCCCCAGAGTAAGTTCGGATGAAGTCTGAGTTATTGCAAAGAGTTTATGGTGCCATTGTCTGAATATACCTACATTGAAATGGCAGGGCTCTACACGTTGTGGCTTATACAAGCCAATGTCATAATTGTATACTGTTCTATTACCATGGGAGGGACTGTTTGGCTCGTAAAACCTGATTATCGGCTTTGTAATAGGCTGTGTTTGCATTACCCAAACTGCACCACAGCTTCATTTATGGCATAGCTCATCTCTCAGCTTAACATCATTGTACAGAAAACTtggttatattttttgtttttccatCTAGAGAACAATTTCTGTACATTATGTTATGGTACACTACTTGGACCTAATAAACAGATTATCAACTTA

Function

NR:

description
probable G-protein coupled receptor 173

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569809.2 True 4039 mRNA 0.42 1 76459458 76463496

Neighbor

gene id symbol gene type direction distance location
zgc:113054 LOC106565741 coding upstream 370789 76073063 ~ 76088669 (+)
mitfa LOC106565743 coding upstream 413292 76006183 ~ 76046166 (+)
arl6ip5a LOC106565746 coding upstream 563965 75891607 ~ 75895493 (+)
LOC110494580 LOC106565755 coding upstream 1199703 75179006 ~ 75259755 (+)
mst1rb LOC106565756 coding upstream 1388030 75052878 ~ 75071428 (+)
gxylt2 LOC106565732 coding downstream 176851 76640347 ~ 76657067 (+)
LOC110494602 LOC106565731 coding downstream 199948 76663444 ~ 76673208 (+)
LOC110494606 LOC106565729 coding downstream 703379 77166875 ~ 77261192 (+)
LOC110494607 LOC106565728 coding downstream 871789 77335285 ~ 77448701 (+)
LOC110494608 LOC106565727 coding downstream 1089031 77552527 ~ 77771222 (+)
G1489496 NA non-coding upstream 168116 76291130 ~ 76291342 (+)
G1489469 NA non-coding upstream 199992 76259111 ~ 76259466 (+)
G1489389 NA non-coding upstream 316001 76143139 ~ 76143457 (+)
G1489388 NA non-coding upstream 316377 76142424 ~ 76143081 (+)
G1489120 NA non-coding upstream 428641 76011292 ~ 76030817 (+)
G1489839 NA non-coding downstream 31746 76495242 ~ 76495466 (+)
G1489842 NA non-coding downstream 36439 76499935 ~ 76500161 (+)
G1489850 NA non-coding downstream 41796 76505292 ~ 76505502 (+)
G1489855 NA non-coding downstream 48243 76511739 ~ 76512013 (+)
G1489859 NA non-coding downstream 49923 76513419 ~ 76513645 (+)
LOC110493252 LOC106565788 other upstream 2050269 74388428 ~ 74432420 (+)
G1486811 NA other upstream 2480023 73978890 ~ 73979435 (+)
G1485819 NA other upstream 3177439 73281260 ~ 73282019 (+)
G1485260 NA other upstream 3334102 73122826 ~ 73125356 (+)
LOC110494525 LOC106565811 other upstream 3413870 73044346 ~ 73049958 (+)
G1490016 NA other downstream 220103 76683599 ~ 76684020 (+)
G1491886 NA other downstream 1544794 78008290 ~ 78008799 (+)
G1491899 NA other downstream 1554872 78018368 ~ 78019816 (+)
G1491963 NA other downstream 1725516 78189012 ~ 78190290 (+)
G1492003 NA other downstream 1789133 78252629 ~ 78253308 (+)

Expression


Co-expression Network