LOC110494599 (LOC106565733)


Basic Information

Item Value
gene id LOC110494599
gene name LOC106565733
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76545230 ~ 76572027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950693.1
TGGGTGTGATGGATGGTGGCgggggggacgacgacgacgacgacgacatGTGTTCACTCAGCCAAGAGTCTCCTGGGGGATGACAGGATGGAGCACATCATTACCCAGGAACGGAAGCGCTGGGCAGGCCCTCACACATGCTGCTTACCACCACAACTATCTCTCTGGATCACAACTCTGCCAACCAAGGACGGCAGCAGCAGGGTTACTGGGTCCAGCAGACTCTggcagacagagacaaacacaggagAGAGGAACTTGAGGAAACCCAGGATCAACTCCCAGCTGGTGGCCCAGCAGGTGGCTCAGCAGTACGCCACGCCTCCCCCACccaagaaggagaggaaggagaggcctGAGAGGGAGCACGACCCAGACGGGGAGCTGGTGGATGTGGAGGGGGAGCACCATGAGGGAGTGCGTCCGGAGAGAGTAAGGCCAGATGAAGAAGAATCTCCCCTGGATAACGGCAGGAAGGAGACACCGGACAATGAGAAAGTGAAAGAGGTAAAagcggaggaggagaaagaggaggagaaagtgaaagaggatgagaaagaggagaaagagatcagCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCATCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGTCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGCCTCAAGGAGATCAACCCAACCACGACCATCACCAAGAAACCCAGCCTCAAAGAGATCAGCCCAACTAGGCCCATCACCAAGAAACCCAATAACAAAGAGATCAGCCTAGCCAGGCCCAACATCAAGAAACCCAACATCAAAGAGATCAGCCTAGCCAGGCCCATCACCAAGAAATCCAGCATCAAAAAGATCAGACCCAAGACAGACATTCACCAGAGTCCACCTAGTGATAAACACAGTGTACAATCTGGGAAGTCAACAACCAAGACCAACAACTCTCACATCTCCAGGCCCAAACTGAAGAATATTGACCGGAGCACCGCCCAGCAGCTAGCGATAACGGTGGGGAACGTGACGGTCATCATAACAGACTTTAAGGAGAAGACCCgctcctcctccacatcctcgTCCACCGTGACATCCAGCGCAGGCTCtgagcagcagcatcagagctccGGCTCCGAGAGCATGGACAAGAGCTCGACTCGCACCTCCACTCCCAAAGGAGAGCTCTCTGTGGGGCAAGATGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCTGAGAGGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTACTGCTGCCCTACCCCCTGCATCCATCTCCATTCCATCACCATCCCTGGATGCTGAGAGAGCTCGCTGATTGGAGCGGCCCCAGCGTGTGCCTGATGGTTAATGTCTAACCATGGGTACACGTTGTGCATGGCCCATGCGGGAGAGTGGGGCTGACAGGAATAATGTATTGTTTTATATTTGTATGTGGATATGTGGCTGATTCAACGTTTTTGTATAAAGAAATTATCTGCA
>XM_036950695.1
TGGGCGTCATGGAGTCACGCGGTGTTCAATCGCTCTGCCCTACCTCGAGCATTCGCTGAACGCGATCTTGTCTGCCAGCTTTAGCAGCGGTTCTATCTGGATCCTCCGTACACAACCTACGACAATTACTGATAATTACTGAAGACCTTTTCTTCTTTTGGGAGACCGTTCTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCGAAAAGACAAGCTAAACCAAGTGCTGACGACGGATATTGGGACTGTAGCGTCTGCACCTTCAAGAACAGTGCAGAGGCTTTTAAATGCAGCATCTGCGATGTGAGGAAGGGCACATCGACAAGGAAACCCAGGATCAACTCCCAGCTGGTGGCCCAGCAGGTGGCTCAGCAGTACGCCACGCCTCCCCCACccaagaaggagaggaaggagaggcctGAGAGGGAGCACGACCCAGACGGGGAGCTGGTGGATGTGGAGGGGGAGCACCATGAGGGAGTGCGTCCGGAGAGAGTAAGGCCAGATGAAGAAGAATCTCCCCTGGATAACGGCAGGAAGGAGACACCGGACAATGAGAAAGTGAAAGAGGTAAAagcggaggaggagaaagaggaggagaaagtgaaagaggatgagaaagaggagaaagagatcagCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCATCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGTCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGCCTCAAGGAGATCAACCCAACCACGACCATCACCAAGAAACCCAGCCTCAAAGAGATCAGCCCAACTAGGCCCATCACCAAGAAACCCAATAACAAAGAGATCAGCCTAGCCAGGCCCAACATCAAGAAACCCAACATCAAAGAGATCAGCCTAGCCAGGCCCATCACCAAGAAATCCAGCATCAAAAAGATCAGACCCAAGACAGACATTCACCAGAGTCCACCTAGTGATAAACACAGTGTACAATCTGGGAAGTCAACAACCAAGACCAACAACTCTCACATCTCCAGGCCCAAACTGAAGAATATTGACCGGAGCACCGCCCAGCAGCTAGCGATAACGGTGGGGAACGTGACGGTCATCATAACAGACTTTAAGGAGAAGACCCgctcctcctccacatcctcgTCCACCGTGACATCCAGCGCAGGCTCtgagcagcagcatcagagctccGGCTCCGAGAGCATGGACAAGAGCTCGACTCGCACCTCCACTCCCAAAGGAGAGCTCTCTGTGGGGCAAGATGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCTGAGAGGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTACTGCTGCCCTACCCCCTGCATCCATCTCCATTCCATCACCATCCCTGGATGCTGAGAGAGCTCGCTGATTGGAGCGGCCCCAGCGTGTGCCTGATGGTTAATGTCTAACCATGGGTACACGTTGTGCATGGCCCATGCGGGAGAGTGGGGCTGACAGGAATAATGTATTGTTTTATATTTGTATGTGGATATGTGGCTGATTCAACGTTTTTGTATAAAGAAATTATCTGCA
>XM_036950696.1
TGGGCGTCATGGAGTCACGCGGTGTTCAATCGCTCTGCCCTACCTCGAGCATTCGCTGAACGCGATCTTGTCTGCCAGCTTTAGCAGCGGTTCTATCTGGATCCTCCGTACACAACCTACGACAATTACTGATAATTACTGAAGACCTTTTCTTCTTTTGGGAGACCGTTCTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCGAAAAGACAAGCTAAACCAAGTGCTGACGACGGATATTGGGACTGTAGCGTCTGCACCTTCAAGAACAGTGCAGAGGCTTTTAAATGCAGCATCTGCGATGTGAGGAAGGGCACATCGACAAGGAAACCCAGGATCAACTCCCAGCTGGTGGCCCAGCAGGTGGCTCAGCAGTACGCCACGCCTCCCCCACccaagaaggagaggaaggagaggcctGAGAGGGAGCACGACCCAGACGGGGAGCTGGTGGATGTGGAGGGGGAGCACCATGAGGGAGTGCGTCCGGAGAGAGTAAGGCCAGATGAAGAAGAATCTCCCCTGGATAACGGCAGGAAGGAGACACCGGACAATGAGAAAGTGAAAGAGGTAAAagcggaggaggagaaagaggaggagaaagtgaaagaggatgagaaagaggagaaagagATCAGCCCAACCAGGCCCATCATCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGTCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGCCTCAAGGAGATCAACCCAACCACGACCATCACCAAGAAACCCAGCCTCAAAGAGATCAGCCCAACTAGGCCCATCACCAAGAAACCCAATAACAAAGAGATCAGCCTAGCCAGGCCCAACATCAAGAAACCCAACATCAAAGAGATCAGCCTAGCCAGGCCCATCACCAAGAAATCCAGCATCAAAAAGATCAGACCCAAGACAGACATTCACCAGAGTCCACCTAGTGATAAACACAGTGTACAATCTGGGAAGTCAACAACCAAGACCAACAACTCTCACATCTCCAGGCCCAAACTGAAGAATATTGACCGGAGCACCGCCCAGCAGCTAGCGATAACGGTGGGGAACGTGACGGTCATCATAACAGACTTTAAGGAGAAGACCCgctcctcctccacatcctcgTCCACCGTGACATCCAGCGCAGGCTCtgagcagcagcatcagagctccGGCTCCGAGAGCATGGACAAGAGCTCGACTCGCACCTCCACTCCCAAAGGAGAGCTCTCTGTGGGGCAAGATGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCTGAGAGGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTACTGCTGCCCTACCCCCTGCATCCATCTCCATTCCATCACCATCCCTGGATGCTGAGAGAGCTCGCTGATTGGAGCGGCCCCAGCGTGTGCCTGATGGTTAATGTCTAACCATGGGTACACGTTGTGCATGGCCCATGCGGGAGAGTGGGGCTGACAGGAATAATGTATTGTTTTATATTTGTATGTGGATATGTGGCTGATTCAACGTTTTTGTATAAAGAAATTATCTGCA
>XM_036950697.1
TGGGCGTCATGGAGTCACGCGGTGTTCAATCGCTCTGCCCTACCTCGAGCATTCGCTGAACGCGATCTTGTCTGCCAGCTTTAGCAGCGGTTCTATCTGGATCCTCCGTACACAACCTACGACAATTACTGATAATTACTGAAGACCTTTTCTTCTTTTGGGAGACCGTTCTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCGAAAAGACAAGCTAAACCAAGTGCTGACGACGGATATTGGGACTGTAGCGTCTGCACCTTCAAGAACAGTGCAGAGGCTTTTAAATGCAGCATCTGCGATGTGAGGAAGGGCACATCGACAAGGAAACCCAGGATCAACTCCCAGCTGGTGGCCCAGCAGGTGGCTCAGCAGTACGCCACGCCTCCCCCACccaagaaggagaggaaggagaggcctGAGAGGGAGCACGACCCAGACGGGGAGCTGGTGGATGTGGAGGGGGAGCACCATGAGGGAGTGCGTCCGGAGAGAGTAAGGCCAGATGAAGAAGAATCTCCCCTGGATAACGGCAGGAAGGAGACACCGGACAATGAGAAAGTGAAAGAGGTAAAagcggaggaggagaaagaggaggagaaagtgaaagaggatgagaaagaggagaaagagatcagCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGTCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGCCTCAAGGAGATCAACCCAACCACGACCATCACCAAGAAACCCAGCCTCAAAGAGATCAGCCCAACTAGGCCCATCACCAAGAAACCCAATAACAAAGAGATCAGCCTAGCCAGGCCCAACATCAAGAAACCCAACATCAAAGAGATCAGCCTAGCCAGGCCCATCACCAAGAAATCCAGCATCAAAAAGATCAGACCCAAGACAGACATTCACCAGAGTCCACCTAGTGATAAACACAGTGTACAATCTGGGAAGTCAACAACCAAGACCAACAACTCTCACATCTCCAGGCCCAAACTGAAGAATATTGACCGGAGCACCGCCCAGCAGCTAGCGATAACGGTGGGGAACGTGACGGTCATCATAACAGACTTTAAGGAGAAGACCCgctcctcctccacatcctcgTCCACCGTGACATCCAGCGCAGGCTCtgagcagcagcatcagagctccGGCTCCGAGAGCATGGACAAGAGCTCGACTCGCACCTCCACTCCCAAAGGAGAGCTCTCTGTGGGGCAAGATGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCTGAGAGGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTACTGCTGCCCTACCCCCTGCATCCATCTCCATTCCATCACCATCCCTGGATGCTGAGAGAGCTCGCTGATTGGAGCGGCCCCAGCGTGTGCCTGATGGTTAATGTCTAACCATGGGTACACGTTGTGCATGGCCCATGCGGGAGAGTGGGGCTGACAGGAATAATGTATTGTTTTATATTTGTATGTGGATATGTGGCTGATTCAACGTTTTTGTATAAAGAAATTATCTGCA
>XM_036950694.1
GATTGGGCGTCATGGAGTCACGCGGTGTTCAATCGCTCTGCCCTACCTCGAGCATTCGCTGAACGCGATCTTGTCTGCCAGCTTTAGCAGCGGTTCTATCTGGATCCTCCGTACACAACCTACGACAATTACTGATAATTACTGAAGACCTTTTCTTCTTTTGGGAGACCGTTCTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCGAAAAGACAAGCTAAACCAAGTGCTGACGACGGATATTGGGACTGTAGCGTCTGCACCTTCAAGAACAGTGCAGAGGCTTTTAAATGCAGCATCTGCGATGTGAGGAAGGGCACATCGACAAGGCCAACCAAGGACGGCAGCAGCAGGGTTACTGGGTCCAGCAGACTCTggcagacagagacaaacacaggagAGAGGAACTTGAGGAAACCCAGGATCAACTCCCAGCTGGTGGCCCAGCAGGTGGCTCAGCAGTACGCCACGCCTCCCCCACccaagaaggagaggaaggagaggcctGAGAGGGAGCACGACCCAGACGGGGAGCTGGTGGATGTGGAGGGGGAGCACCATGAGGGAGTGCGTCCGGAGAGAGTAAGGCCAGATGAAGAAGAATCTCCCCTGGATAACGGCAGGAAGGAGACACCGGACAATGAGAAAGTGAAAGAGGTAAAagcggaggaggagaaagaggaggagaaagtgaaagaggatgagaaagaggagaaagagatcagCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCATCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAGACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACCCAGCCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGTCTCAAGGAGATCAGCCCAACCAGGCCCATCACCAAGAAACACAGCCTCAAGGAGATCAACCCAACCACGACCATCACCAAGAAACCCAGCCTCAAAGAGATCAGCCCAACTAGGCCCATCACCAAGAAACCCAATAACAAAGAGATCAGCCTAGCCAGGCCCAACATCAAGAAACCCAACATCAAAGAGATCAGCCTAGCCAGGCCCATCACCAAGAAATCCAGCATCAAAAAGATCAGACCCAAGACAGACATTCACCAGAGTCCACCTAGTGATAAACACAGTGTACAATCTGGGAAGTCAACAACCAAGACCAACAACTCTCACATCTCCAGGCCCAAACTGAAGAATATTGACCGGAGCACCGCCCAGCAGCTAGCGATAACGGTGGGGAACGTGACGGTCATCATAACAGACTTTAAGGAGAAGACCCgctcctcctccacatcctcgTCCACCGTGACATCCAGCGCAGGCTCtgagcagcagcatcagagctccGGCTCCGAGAGCATGGACAAGAGCTCGACTCGCACCTCCACTCCCAAAGGAGAGCTCTCTGTGGGGCAAGATGAGTCCTTCTGAGCCCTCCAGTCCAGGTGCTCTGAGAGGACTCTGTGGATGGGATCCCTTAGGGGGAGATATTTCACCTTCCTACTGCTGCCCTACCCCCTGCATCCATCTCCATTCCATCACCATCCCTGGATGCTGAGAGAGCTCGCTGATTGGAGCGGCCCCAGCGTGTGCCTGATGGTTAATGTCTAACCATGGGTACACGTTGTGCATGGCCCATGCGGGAGAGTGGGGCTGACAGGAATAATGTATTGTTTTATATTTGTATGTGGATATGTGGCTGATTCAACGTTTTTGTATAAAGAAATTATCTGCA

Function

NR:

description
PREDICTED: RING1 and YY1-binding protein B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950693.1 False 1720 mRNA 0.55 5 76545230 76553469
XM_036950695.1 False 1785 mRNA 0.54 5 76545230 76572024
XM_036950696.1 False 1740 mRNA 0.53 6 76545230 76572024
XM_036950697.1 False 1695 mRNA 0.53 6 76545230 76572024
XM_036950694.1 True 1872 mRNA 0.54 6 76545230 76572027

Neighbor

gene id symbol gene type direction distance location
LOC110493258 NA coding downstream 77627 76464920 ~ 76467603 (-)
LOC110494597 LOC106565735 coding downstream 116057 76425342 ~ 76429173 (-)
LOC110494596 LOC106565737 coding downstream 127782 76184376 ~ 76417448 (-)
mdfic2 LOC106565739 coding downstream 436821 76093616 ~ 76108409 (-)
LOC110494594 LOC106565742 coding downstream 471004 76065107 ~ 76074226 (-)
LOC110494603 LOC106582849 coding upstream 127434 76698772 ~ 76835863 (-)
LOC110494605 LOC106565730 coding upstream 436212 77008239 ~ 77087427 (-)
LOC110494609 LOC105017386 coding upstream 1199374 77771401 ~ 77956458 (-)
LOC110494610 NA coding upstream 1403262 77975289 ~ 77976652 (-)
LOC110495194 NA coding upstream 1411376 77983403 ~ 77984480 (-)
G1489935 NA non-coding downstream 10189 76534402 ~ 76535041 (-)
G1489930 NA non-coding downstream 17314 76527614 ~ 76527916 (-)
G1489826 NA non-coding downstream 66958 76477966 ~ 76478272 (-)
G1489327 NA non-coding downstream 457571 76086757 ~ 76087659 (-)
G1489962 NA non-coding upstream 14211 76586238 ~ 76586531 (-)
G1490162 NA non-coding upstream 65394 76637421 ~ 76637642 (-)
G1490167 LOC107713518 non-coding upstream 76797 76648824 ~ 76649070 (-)
G1490171 NA non-coding upstream 82683 76654710 ~ 76654985 (-)
G1490170 NA non-coding upstream 84316 76656343 ~ 76656422 (-)
G1488708 NA other downstream 1019634 75525182 ~ 75525596 (-)
G1488266 NA other downstream 1281007 75263720 ~ 75264223 (-)
G1487872 NA other downstream 1645483 74899391 ~ 74899747 (-)
G1487599 NA other downstream 1837621 74707345 ~ 74707609 (-)
G1487454 LOC106565788 other downstream 2121345 74422647 ~ 74423885 (-)
G1490147 NA other upstream 124769 76696796 ~ 76698096 (-)
G1491128 NA other upstream 909914 77481941 ~ 77482389 (-)
LOC110493260 NA other upstream 1515576 78086079 ~ 78088852 (-)
LOC110494620 LOC106565713 other upstream 1642972 78214999 ~ 78389849 (-)
G1492729 NA other upstream 1900991 78473018 ~ 78475506 (-)

Expression


Co-expression Network