LOC110494605 (LOC106565730)


Basic Information

Item Value
gene id LOC110494605
gene name LOC106565730
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77008239 ~ 77087427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569820.2
GTGTCATCAGTGAGCGCTTCACCACCTCTGCACTACCGCTGAAGCCCGGGGATGCGCAGAATGTTAATACATCTCGACTCAGAGATCACTCTGTCACAGTATTCCTCCAGACTGGCAGCATTTTTGGAGTGTCTTGGTTGTTGAAGGACTAAACCAAAGCACCTGTGAGTGAGAAGGCGACCTCGGAGTTGAAGCTCTGTCACTGCTGAGCTAATTGTTTGGGTGCCTCGGGATTACATCGAGGAGCATCTCCACCAAACCAAGAGGAGAGAGGCATATGCGGGACTTTTTACGAGTGTAGTGTGCACGGACTGGGATTCTGTGGACCAGCGTTTACGCGCAACCTCTCGATGGGATTCTGAATGAGAGAACCAAAGCTGCTacgaaaatgtatatatatttttaaaggacATAGAGACACTCGATAAATACCACCACTTATGTCCGGCTCATTTCTCTGATCATACAATTTCATGAAGAGGAAAAAACATTCTGTTTAACAACTCAATTAAGATTCTCGTAATCAAGGGAGGACATTCCATTCACAAGCAATTGGATGAGAGTCGTATTTGCCCTTGGCAACTGAAGATGATGTTACTATGGAAACGACTTCTGCTGCTATCAATCATTGGTTGCCTTGCCGCTCATGCACAAGATGTCCTGTTCCAAGGGCCAAGATGGAGAACAGAGCCCAGTGACCTCATTCTCCCCAACAACTCCCCTGACCAGGAAGCCACCATTACATGTGAGGCAGAGGGGAAACCCTCCCCACAATACAGATGGTCGCTTAACGGAACACTCATTGATCTGGGGAGTGACTACCGGCGTCACATGTCTGGAGGCAACCTGATCATTAACAGTCTGGACAGGGACCAAGACACAGGGATATACCAGTGCACTGCCTTCAACACATGGGGGATCATCCTCAGCTGCCGAGCCACTCTACAATTTGCATACCTAGATAACTTCAAGACCCAAACTGCACGGAGTGCTGTGAATGTCCGAGAGGGCCAAGGAGTGGTTTTGTTATGTGGACCACCCATGCATTCTGGAGagcTGACGTTTGCATGGATCTTCAATGAGTACCCCTACTTTGTCCAGCAAGATAGTCGTCGATTCATCTCCCAGGAGACAGGAAGTCTGTACATCGCTAAAGTGGAGCCTTCTGATGTGGGCAACTACACCTGTGTGGTCAACAATAGCATCACTAAGGGCAAAGTCCTCAGCTCTCCTACACCACTGGTCCTGAGGAATGACGGAGCAATGGGTGAATACGAACCGAAAATAGAAGTTAATTTCCCTGACACTGTTCCAGCTGCGAAGGGATCCACGGTAAAACTAGAATGCTTCGCACTGGGAAACCCAGTCCCAGAAATAAGTTGGAGGAGAACCAGCGGTGTCCCATTTCCCAGTAAGGTGAAGATGAAGAACTCCAACGCTGTTCTTGAAATTCCACATTTCCAGCAGGAAGACACAGGGATGTATGAGTGCGTGGCAGAAAATAGCCGGGGAAAAAACGCTGCACGAGGTCGTATCGCCTTCCAGGCAAAACCCCATTGGCTGCAAACAATGATCGACGGGGCCCTGTCCATTGAGGAGAACCTGTTCTGGGAGTGTAAGGCAAACGGAAAACCCAAGCCCTCCTACAGTTGGCTGAGGAATGGAGACAACCTAATGGCAGAGGGCCGGGTACAAATCGAAAACGGGGCTCTCTCCATAGCAGCATTAAACCTGTCAGACGCCGGAATGTATCAGTGTGTGGCTGAAAACAAACATGGCATTATTTATTCCAGCGCTGAGCTAATGGTGTTAGCATCACCTCCCAGTTTCTCCAAGAATCCACTGAAGCCCCTGCTGAAAGCTCGCTCAGGCAGTGAAGTGGTTCTGGAGTGCAAGCCCCAAGCCTCGCCCCGGGCAATTAGCCTGTGGAAGAAAAGCAATGAGATCGTGCAGAAAAACGAGAGGATTACTCTGCTTGCCAACGGGACACTGAAGATTGTCAACGCAACCAGAAGGGATGCGGGGAGCTACACATGCATCGCTAAAAATCAGTTTGGGACTGCAAGCGCCACCGGAAGACTCCTTATCACAGAGCCCACCAGAATCACCCAGAGGCCTGCTAACATGGAGATCATTGTTGGCGAGAGTATCGTGCTGCCCTGCCAGATAGCCAGCGATCCAGCCTTGGATGTGTCTTTCTCCTGGGAATTCAACGGGCAGCTCATAGACTTCCACGGGGATGCCGACCATTTCGACAGAGTAGGAGGGAGCATTTCAGGAGATCTGATGATTCGTAACATCCAGCTGAATCACGGGGGGAAATATGTCTGTGTTATCGACACCGACGTAGAGAGCTTGTCCGCTTCGGCCATCTTGGTTGTGAAAGGTCCCCCCGGGCCCCCGGACACAGTAGCAGTGGAGGAGATCACAGATAGCACGGCCCAGCTCTCTTGGAGCCCCGGCAGGGACAACGGCAGCCCTATCACCGGCTACATCATCCAGGCCCGGACCCCCTTCACTGTGGGCTGGCAGGCTGTGGACACAGTTCCTGAGGTGATCAATGGCAACACACTGACAGCCACTGTGGTGGGCCTGAACGCCTGGGTGGAGTATGAGTTCAGGGTGGTGGCCCGCAACAGTGTGGGCATGGGAGAGCCCAGTCCAGCCTCAGCCAAGACCAGGACAGAGGATACCATGCCTGATACAGCTCCCACTGATGTTGGAGGCGGAGGAGGCACAAAATCTGAATTAGTGATAACTTGGGAGCCCGTGCCTGAGGAACTGCAGAATGGAGAGGGCTTCGGTTACATCATCGCCTTCCGGCCGCTGGGTGCCATCACCTGGACACGAGTGGTCATCTCCACGCCCGGGGTGGCCCGATACATCTTCCGCAACGACACCATCCCGCCTTTCTCACCGTTTGATGTGAAGGTTGGGGCGTACAACAACCGTGGGGAAGGCCCCTTCAGTTCCATAGCCACAGTGTTCTCAGCAGAGGAAGTCCCCAGTGAGGCTCCTAAGCGGGTTTGGGGCAGGAGTGTAtctgcagctacagttgaagtgATTTGGGAAGCCCTCCCCGTCACCCCTGAAAGAGTGCTGGGTTATGAGGTGGTGTACTGGGAAGATGACACCAAGCCTGACACAGTAGGCAAAGTCAGAACCTCTGGAAACTACTCAGCGGTTAATGTGACTGGACTGAGCGCTAACACACAGTATTATCTAGCTGTGTGCGCCTTTAACACTGCAGGGACAGGGCCACAGTCTACACACATCAACGCCACCACCAAGAAGCCAGCACCTGGCCAGCCTCCTTTGAATGTAGAGTGGACCATGATTGGCTCTCTGCTCACTCTACACTGGGGTCCTGTGATAGCCatggagacagaggcagaggtcATCGGATATCTTGTGCTGTTGAGAAGACACCGGTACAATGACGTAAACAGCATCATAACAAACAAAACCAGGATGGAGCTGACGCTGTCTCCCAACGACAACTACTTGATCCAGATCAAGGCCCTGAGTGAGGGTGGTGAAGGTGTGGGCAGCGAACCCATCCACATCCACAAATTAAGCATGGGCGCACGAGGTTCGGGAGCATCTAATCTCAATCCGCTATCGCTGTCTCATCTCTCCGCATTCCTCATCagcgctctcctcctcctcaactcCTCCTGGTGATGTCTGGACACAGTCACAGCCCTCCTACCGgccctcctcactccctctcctctagCAGCCTGCTCCTGCATTCAGATAGGCATGGATGCAACCCTCTGTGGCAGTGCTGGACAGAACAGGAATTTTGAAGGGGCCATGCATTGAGGATATAAATTAAGTTCTGTAGAAAACATGAATTTGTGTGCATGATATTTAACAGTTTCCTCTCATATCATAAGTGCTGTCATGCTGTAAAACCATTTTGGAAATCTTTTTTTTCCAATGGAATATACTTCTATTTGGGAGTACTGATGTCTACAttatatatgtacagttgaagtcggaagtttagccAAAtatagtttttcacaattcctgacatttaatcagagtaaaaagtccctgtcttaagtcagttaggatcaacactttatattaagaatgtgaa
>XM_021569821.2
CATGTGTCATCAGTGAGCGCTTCACCACCTCTGCACTACCGCTGAAGCCCGGGGATGCGCAGAATGTTAATACATCTCGACTCAGAGATCACTCTGTCACAGTATTCCTCCAGACTGGCAGCATTTTTGGAGTGTCTTGGTTGTTGAAGGACTAAACCAAAGCACCTGTGAGTGAGAAGGCGACCTCGGAGTTGAAGCTCTGTCACTGCTGAGCTAATTGTTTGGGTGCCTCGGGATTACATCGAGGAGCATCTCCACCAAACCAAGAGGAGAGAGGCATATGCGGGACTTTTTACGAGTGTAGTGTGCACGGACTGGGATTCTGTGGACCAGCGTTTACGCGCAACCTCTCGATGGGATTCTGAATGAGAGAACCAAAGCTGCTacgaaaatgtatatatatttttaaaggacATAGAGACACTCGATAAATACCACCACTTATGTCCGGCTCATTTCTCTGATCATACAATTTCATGAAGAGGAAAAAACATTCTGTTTAACAACTCAATTAAGATTCTCGTAATCAAGGGAGGACATTCCATTCACAAGCAATTGGATGAGAGTCGTATTTGCCCTTGGCAACTGAAGATGATGTTACTATGGAAACGACTTCTGCTGCTATCAATCATTGGTTGCCTTGCCGCTCATGCACAAGATGTCCTGTTCCAAGGGCCAAGATGGAGAACAGAGCCCAGTGACCTCATTCTCCCCAACAACTCCCCTGACCAGGAAGCCACCATTACATGTGAGGCAGAGGGGAAACCCTCCCCACAATACAGATGGTCGCTTAACGGAACACTCATTGATCTGGGGAGTGACTACCGGCGTCACATGTCTGGAGGCAACCTGATCATTAACAGTCTGGACAGGGACCAAGACACAGGGATATACCAGTGCACTGCCTTCAACACATGGGGGATCATCCTCAGCTGCCGAGCCACTCTACAATTTGCATACCTAGATAACTTCAAGACCCAAACTGCACGGAGTGCTGTGAATGTCCGAGAGGGCCAAGGAGTGGTTTTGTTATGTGGACCACCCATGCATTCTGGAGagcTGACGTTTGCATGGATCTTCAATGAGTACCCCTACTTTGTCCAGCAAGATAGTCGTCGATTCATCTCCCAGGAGACAGGAAGTCTGTACATCGCTAAAGTGGAGCCTTCTGATGTGGGCAACTACACCTGTGTGGTCAACAATAGCATCACTAAGGGCAAAGTCCTCAGCTCTCCTACACCACTGGTCCTGAGGAATGACGGAGCAATGGGTGAATACGAACCGAAAATAGAAGTTAATTTCCCTGACACTGTTCCAGCTGCGAAGGGATCCACGGTAAAACTAGAATGCTTCGCACTGGGAAACCCAGTCCCAGAAATAAGTTGGAGGAGAACCAGCGGTGTCCCATTTCCCAGTAAGGTGAAGATGAAGAACTCCAACGCTGTTCTTGAAATTCCACATTTCCAGCAGGAAGACACAGGGATGTATGAGTGCGTGGCAGAAAATAGCCGGGGAAAAAACGCTGCACGAGGTCGTATCGCCTTCCAGGCAAAACCCCATTGGCTGCAAACAATGATCGACGGGGCCCTGTCCATTGAGGAGAACCTGTTCTGGGAGTGTAAGGCAAACGGAAAACCCAAGCCCTCCTACAGTTGGCTGAGGAATGGAGACAACCTAATGGCAGAGGGCCGGGTACAAATCGAAAACGGGGCTCTCTCCATAGCAGCATTAAACCTGTCAGACGCCGGAATGTATCAGTGTGTGGCTGAAAACAAACATGGCATTATTTATTCCAGCGCTGAGCTAATGGTGTTAGCATCACCTCCCAGTTTCTCCAAGAATCCACTGAAGCCCCTGCTGAAAGCTCGCTCAGGCAGTGAAGTGGTTCTGGAGTGCAAGCCCCAAGCCTCGCCCCGGGCAATTAGCCTGTGGAAGAAAAGCAATGAGATCGTGCAGAAAAACGAGAGGATTACTCTGCTTGCCAACGGGACACTGAAGATTGTCAACGCAACCAGAAGGGATGCGGGGAGCTACACATGCATCGCTAAAAATCAGTTTGGGACTGCAAGCGCCACCGGAAGACTCCTTATCACAGAGCCCACCAGAATCACCCAGAGGCCTGCTAACATGGAGATCATTGTTGGCGAGAGTATCGTGCTGCCCTGCCAGATAGCCAGCGATCCAGCCTTGGATGTGTCTTTCTCCTGGGAATTCAACGGGCAGCTCATAGACTTCCACGGGGATGCCGACCATTTCGACAGAGTAGGAGGGAGCATTTCAGGAGATCTGATGATTCGTAACATCCAGCTGAATCACGGGGGGAAATATGTCTGTGTTATCGACACCGACGTAGAGAGCTTGTCCGCTTCGGCCATCTTGGTTGTGAAAGGTCCCCCCGGGCCCCCGGACACAGTAGCAGTGGAGGAGATCACAGATAGCACGGCCCAGCTCTCTTGGAGCCCCGGCAGGGACAACGGCAGCCCTATCACCGGCTACATCATCCAGGCCCGGACCCCCTTCACTGTGGGCTGGCAGGCTGTGGACACAGTTCCTGAGGTGATCAATGGCAACACACTGACAGCCACTGTGGTGGGCCTGAACGCCTGGGTGGAGTATGAGTTCAGGGTGGTGGCCCGCAACAGTGTGGGCATGGGAGAGCCCAGTCCAGCCTCAGCCAAGACCAGGACAGAGGATACCATGCCTGATACAGCTCCCACTGATGTTGGAGGCGGAGGAGGCACAAAATCTGAATTAGTGATAACTTGGGAGCCCGTGCCTGAGGAACTGCAGAATGGAGAGGGCTTCGGTTACATCATCGCCTTCCGGCCGCTGGGTGCCATCACCTGGACACGAGTGGTCATCTCCACGCCCGGGGTGGCCCGATACATCTTCCGCAACGACACCATCCCGCCTTTCTCACCGTTTGATGTGAAGGTTGGGGCGTACAACAACCGTGGGGAAGGCCCCTTCAGTTCCATAGCCACAGTGTTCTCAGCAGAGGAAGTCCCCAGTGAGGCTCCTAAGCGGGTTTGGGGCAGGAGTGTAtctgcagctacagttgaagtgATTTGGGAAGCCCTCCCCGTCACCCCTGAAAGAGTGCTGGGTTATGAGGTGGTGTACTGGGAAGATGACACCAAGCCTGACACAGTAGGCAAAGTCAGAACCTCTGGAAACTACTCAGCGGTTAATGTGACTGGACTGAGCGCTAACACACAGTATTATCTAGCTGTGTGCGCCTTTAACACTGCAGGGACAGGGCCACAGTCTACACACATCAACGCCACCACCAAGAAGCCAGCACCTGGCCAGCCTCCTTTGAATGTAGAGTGGACCATGATTGGCTCTCTGCTCACTCTACACTGGGGTCCTGTGATAGCCatggagacagaggcagagGTGCTGTTGAGAAGACACCGGTACAATGACGTAAACAGCATCATAACAAACAAAACCAGGATGGAGCTGACGCTGTCTCCCAACGACAACTACTTGATCCAGATCAAGGCCCTGAGTGAGGGTGGTGAAGGTGTGGGCAGCGAACCCATCCACATCCACAAATTAAGCATGGGCGCACGAGGTTCGGGAGCATCTAATCTCAATCCGCTATCGCTGTCTCATCTCTCCGCATTCCTCATCagcgctctcctcctcctcaactcCTCCTGGTGATGTCTGGACACAGTCACAGCCCTCCTACCGgccctcctcactccctctcctctagCAGCCTGCTCCTGCATTCAGATAGGCATGGATGCAACCCTCTGTGGCAGTGCTGGACAGAACAGGAATTTTGAAGGGGCCATGCATTGAGGATATAAATTAAGTTCTGTAGAAAACATGAATTTGTGTGCATGATATTTAACAGTTTCCTCTCATATCATAAGTGCTGTCATGCTGTAAAACCATTTTGGAAATCTTTTTTTTCCAATGGAATATACTTCTATTTGGGAGTACTGATGTCTACAttatatatgtacagttgaagtcggaagtttagccAAAtatagtttttcacaattcctgacatttaatcagagtaaaaagtccctgtcttaagtcagttaggatcaacactttatattaagaatgtgaa
>TU1704140
AATGGTCAGGGGGCCTGAACatcattacaaatcatttgtggactgcaaattgacagcaagaagcccaaacatatataatatttgactaaaacataatcatttcaaaccttgcatagatttgtatatgatcacatatatctctctattatgcgtgggagtactttggaacagatttgctaaattaaaatcacattttttatAAAGAAAATACATGTAATaattttttgctcagaaaactagGGGACCAAATAAAATCACAGCCATTTGGGGAACCATTGTTTAAACACTACATCTAATCATTGCAACCAAGGTTGAAGACCTCTTTGGCAGGTGCTTGATGACAAACGCAGGGGTGTCAGTGTATTTGTCTGTATGCGTTTTAATATCACTATAGTTTTGTGTTTCGCTCCCAGCCCGTGCCTGAGGAACTGCAGAATGGAGAGGGCTTCGGTTACATCATCGCCTTCCGGCCGCTGGGTGCCATCACCTGGACACGAGTGGTCATCTCCACGCCCGGGGTGGCCCGATACATCTTCCGCAACGACACCATCCCGCCTTTCTCACCGTTTGATGTGAAGGTTGGGGCGTACAACAACCGTGGGGAAGGCCCCTTCAGTTCCATAGCCACAGTGTTCTCAGCAGAGGAAGTCCCCAGTGAGGCTCCTAAGCGGGTTTGGGGCAGGAGTGTAtctgcagctacagttgaagtgATTTGGGAAGCCCTCCCCGTCACCCCTGAAAGAGTGCTGGGTTATGAGGTGGTGTACTGGGAAGATGACACCAAGCCTGACACAGTAGGCAAAGTCAGAACCTCTGGAAACTACTCAGCGGTTAATGTGACTGGACTGAGCGCTAACACACAGTATTATCTAGCTGTGTGCGCCTTTAACACTGCAGGGACAGGGCCACAGTCTACACACATCAACGCCACCACCAAGAAGCCAGCACCTGGCCAGCCTCCTTTGAATGTAGAGTGGACCATGATTGGCTCTCTGCTCACTCTACACTGGGGTCCTGTGATAGCCatggagacagaggcagaggtcATCGGATATCTTGTATGTCTCATGTCACTGTGGCTCTATTCTTTTGTCAAGCACAACACAACCATCTCAAACCCACTCTTTCCATCATTTTGGTAAGGTTTTCTACAGGGACAAAACATCCATAGCTCCAACCAGCAAACCTCACTCTACTGTCACCAAGCATTAGGAGCCATTTTATCATCCAATCAGCAAATCAAGTTTAAATTCCCTCACTCCTCACTGCTCATTTCAGGCGATCTTTCAtttttgattgtgtgttttgcaTTGCCGTTTCTAGGTGCTGTTGAGAAGACACCGGTACAATGACGTAAACAGCATCATAACAAACAAAACCAGGATGGAGCTGACGCTGTCTCCCAACGACAACTACTTGATCCAGATCAAGGCCCTGAGTGAGGGTGGTGAAGGTGTGGGCAGCGAACCCATCCACATCCACAAATTAAGCATGGGCGCACGAGGTTCGGGAGCATCTAATCTCAATCCGCTATCGCTGTCTCATCTCTCCGCATTCCTCATCagcgctctcctcctcctcaactcCTCCTGGTGATGTCTGGACACAGTCACAGCCCTCCTACCGgccctcctcactccctctcctctagCAGCCTGCTCCTGCATTCAGATAGGCATGGATGCAACCCTCTGTGGCAGTGCTGGACAGAACAGGAATTTTGAAGGGGCCATGCATTGAGGATATAAATTAAGTTCTGTAGAAAACATGAATTTGTGTGCATGATATTTA

Function

NR:

description
PREDICTED: contactin-3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569820.2 False 4111 mRNA 0.51 23 77008239 77087424
XM_021569821.2 False 4099 mRNA 0.51 23 77008239 77087427
TU1704140 True 1791 lncRNA 0.47 5 77008471 77013421
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110494603 LOC106582849 coding downstream 172376 76698772 ~ 76835863 (-)
LOC110494599 LOC106565733 coding downstream 436212 76545230 ~ 76572027 (-)
LOC110493258 NA coding downstream 540636 76464920 ~ 76467603 (-)
LOC110494597 LOC106565735 coding downstream 579066 76425342 ~ 76429173 (-)
LOC110494596 LOC106565737 coding downstream 590791 76184376 ~ 76417448 (-)
LOC110494609 LOC105017386 coding upstream 683974 77771401 ~ 77956458 (-)
LOC110494610 NA coding upstream 887862 77975289 ~ 77976652 (-)
LOC110495194 NA coding upstream 895976 77983403 ~ 77984480 (-)
LOC118940494 NA coding upstream 902473 77989900 ~ 77990977 (-)
LOC110494611 NA coding upstream 909307 77996734 ~ 77998924 (-)
G1490572 NA non-coding downstream 2658 77003804 ~ 77005581 (-)
G1490401 NA non-coding downstream 55067 76952972 ~ 76953172 (-)
G1490382 NA non-coding downstream 71168 76936866 ~ 76937071 (-)
G1490372 NA non-coding downstream 79003 76928783 ~ 76929236 (-)
G1490354 NA non-coding downstream 92977 76915035 ~ 76915262 (-)
G1490630 NA non-coding upstream 18867 77106294 ~ 77106761 (-)
G1490901 NA non-coding upstream 226841 77314268 ~ 77314546 (-)
G1491129 NA non-coding upstream 395473 77482900 ~ 77483182 (-)
G1491155 NA non-coding upstream 413055 77500482 ~ 77500764 (-)
G1491167 NA non-coding upstream 426095 77513522 ~ 77513864 (-)
G1490147 NA other downstream 310143 76696796 ~ 76698096 (-)
G1488708 NA other downstream 1482643 75525182 ~ 75525596 (-)
G1488266 NA other downstream 1744016 75263720 ~ 75264223 (-)
G1487872 NA other downstream 2108492 74899391 ~ 74899747 (-)
G1487599 NA other downstream 2300630 74707345 ~ 74707609 (-)
G1491128 NA other upstream 394514 77481941 ~ 77482389 (-)
LOC110493260 NA other upstream 1000176 78086079 ~ 78088852 (-)
LOC110494620 LOC106565713 other upstream 1127572 78214999 ~ 78389849 (-)
G1492729 NA other upstream 1385591 78473018 ~ 78475506 (-)
G1492897 NA other upstream 1683313 78770740 ~ 78771954 (-)

Expression

LOC110494605(LOC106565730) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110494605(LOC106565730) Expression in each Bioproject

Bar chart with 20 bars.
LOC110494605(LOC106565730) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network