LOC110494607 (LOC106565728)


Basic Information

Item Value
gene id LOC110494607
gene name LOC106565728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77335285 ~ 77448701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569830.2
TTGTGCGGGGGAGGGGTCTATGGTGTGGCGTTTTTGTGCTGCCAAAATCTACACTGGGAGAAACAGTTTGGACATCAAGCGGTTCTGTATCAAAAGCGATTTGAGATTCCTGTGTTCCGGACGTCTTCACAGTCCTCTTGGTTTTGAAGAACCTCTCCTTTTGCCTGCGAATATCAAGTTCATACTCGCCTGCAGCAACCTGCCCTGTCTTCTCTGTTGAAGCTAAAAGGAGCAGAGTTTACACAGGAAATATTCTACTCTCCCTGGCAATTGGATGGGAGAAAAGAAAATCTTTGACCTTGGAAATTGAAGATGTTGTTGCCATGGGAACTGTTAATCCTTCTGTCACTCAAGGTCTGCCTTGCTGAGAGAAACCCTCGCCATGGACCCGTCTTCAGTCAAGAACCAAGTGACAGCATTTTCCCCTTGAGGTTTGAGGACAACAAGGTGTTCATCAATTGTAAAGCAAAGGGGAACCCAGCCCCATATTATAAATGGAAGGTTGATGGGAGAGAGATTGACATGGATTTGAACTATAACCTGGTTGAAGGAAACCTGTTGATCAATAACCCTCATGCAACACATCATGGGGGGGTTTACCAGTGTATTGCTACCAATACCTTTGGAACCATCCTCAGCAGGGAGGCCAAGGTGCAGTTTGCATATCTACAGAATTTCAGCAGAAAGCCCAGGAACACAGTGTCAGTGAGAGAAGGCCAGGCAGTGGTGCTACTGTGTGGCCCTCCACCCCATAATGGAGAGATCAAATACTCGTGGGTTTTCAACGGACGCCCAAGTTTCCTGCTGCAGGATACCCGCCGCTTCGTCTCCCAGAGGACAGGcaacctgtacatagccaaagTGGAGGCCTCCGATGTGGGGAACTACACGTGTGTGGTGAGGAACATGATGACCAACGCCACCGTTTACAGCTCGCCCACCCCCGTGGAGCTGCGCAGGGACGCTGTAATGGCAGAGTATGAGCCAAAGATCGAAGTTCAGTTCCCAGAAAGACTTCATGTCACCAAAGGATCATCAGTGAAACTGGAATGCTTCGCCTTAGGAAACCCAGTGCCTGCCATCacatggaggagaacagatgggAATCCCCTCCCTGGCAAGATGAAAATCAACCATTCCAATGGGGTCCTGGAAATACCATATTTCAGACCGGAGGATGCTGGTGCATATGAGTGTGTTGCAGAGAACTCCAGAGGAAAAAACATCGCCAAGGGGCAACTCATATTCCAGAATGTTGAACATCTGCACTGGGTCCAGACATTAAAAGATGCTCATATGGCTATCGAGGCTAATCTTCAGTGGGAGTGTAGGGCGAGCGGTAAACCTAAACCTGTGTACAGATGGCTGAAGAACGGGGAGCccctggtgttggagGACAGGATACTTTTAGAAGGTGGACGATTGGCCATATCCAGGATCAACCTGTTGGACTCTGGGATGTACCAGTGCCTGGCAGAGAACGAACATGGAGCCATCTATGCCAGTGCTGAACTCAAGGTTGTAGCCTCTGCACCTGACTTCTCCAAGAGTCTTGTGAAGAAGTCCATGCTGATCcagagagggggggaggtgaTAATGGAGTGCCGTCCCCATGCGTCCCCAAGGGCCTCCATCTCCTGGCGGAGAGGGGGAGAGTTTCTGAAGGACAGCAGGAGACGGACTATTATGGAGGATGGAACTCTCCGTATCACCAACATCAGCAAATCAGACGGAGGGAGGTACACCTGTGTGGCCAGGAACCCCTTTGGGACATCAAGCAGTACTGGTACTCTGGTGGTGAAAGAGCCAACCAAGATAACGGTTCCACCACTGAGTGTGGATGCCACTGTGGGACAGAGCATCGTGTTGCCATGTGAAGTGTCCCGAGACTCCTCCCTGGATCCCACCTTTAAGTGGTTCTTCAACGGCAAACTCATTGATTTTAACAAACAGGACCACATTGAGATGATAGGAGGGGAATCAGCTGGTGATCTGATGGTCAGGAATATTCAGCTAAAGCATTCTGGGAAGTATGTGTGCATGGTTCACACCGTGGTGGACAGTGTCTCAGCAGCAGCCGACCTCATTGTCAGAGGACCACCCGGTGCCCCAGAGGGCCTCATGGTGGGGGAGATCACTGACTCCAGTGCCCAGCTCTCCTGGGGGTCTGGGCCAGACAACCACAGCCCTGTCACCACATACAGCATCCAGGCCAGGACCCCCTTCTCCATTGGCTGGCAGGCCGTCAGGACAGTTCCTGATTCTGTGCCTGGACAGATGTTTCATGCAACAGTGATAGATTTAAACCCCTGGGTGGATTATGAATTCAGGGTGGTGGCTAGCAACAATGTGGGTGTTGGAGAGCCCAGCATGCAATCCAAGCAGATTCGAACGAAAGCAGCAGTTCCTGAAGTAGCACCGGGTAATgtgagtggaggaggaggtagcCGAGGAGAACTGGTTATCCAATGGGAGCCGATACCAGAGGAACTACAGAATGGAGAGGAATTTGGATATATTGTGGCTTTTCGTTCTCTTGGTACAACCACGTGGAAACAGACTGTGCTGCCTTCACCTGATGCATCAAGATACACATTCAGGAACGACAgcatccctcccctctcccaaTTTGAGGTGAAAGTTGGAGTCTACAACAACGAAGGAGAAGGCCCATCTAGCCATGTGGTTGTAGTGTATTCTGCAGAGGAAGAGCCCTCTATAGCTCCGTCCAGAGTGTTGGCCCGGACGCTATCAGCCTCTGAAATCGAGGTGTACTGGGAACCCATCCCCCAGACAGCCAGCAGTGGGAAGATCATTGGATATGAGGTGCTTTGTTGGGAGGAGGGGGTGCAGGAGAGTGATGCTGAGATGGTGAAGGTCACGGATACTGTGGCCCTTCTCTCTGGACTCATGGGAAGTACGTTGTATCTgatctcagtcagggcccagaaCAGTGCTGGAGCAGGGCCTTCTAGCCCTGCAGTCAATGTCACCACCAAGAAACCACCACCAAGTCAACCTCCAGGGAATATTGAGTGGAACTTGACCAACTCCAAGATCTTTTTAAAGTGGGAGCATGTCAAGGCAATGGGAAATGAGTCTGAGGTGACAGGATACAAGGTGGTGTACCGTCAGAACTGGCTTGGAAAGAGCAGCGTGGTGGAGACCAACAGGACCAGTGTGGAGCTGCAAGTCCCCTCTGGCGAGGACTACCTCATTGAGATCAAAGTCTTGAGTGGTGGAGGTGATGGCAGCAGCAGTGGCCCCATCAGGATACCAAAGATGTCCAGTCTTAACTCAAAGGGCCGTTTCAGCTCAACTCCAATGAACATTTGTGTAGTTATGTTTTTTATACTTTCAAGGTTAACTTTGTAACTTAAAATGCCTTTTATGAACTCTAACTTTGAGAATCATCTACTCAGCAAAGTATGTGGCAGATTATAACAAACTGTTATTTTATGTGTAGCATTCACTTCTCAAGAATGTGAAATCATCAGCTTACTATTTAGAGTATTCAATGCAGCTGCATTGCCTTATATTTGTATGCAGTTTTGTGTTCATTTGTCAACCAAGCTTTTGAGTGTTTTATTTCACTAGATATTATGCAGAAAGGTCAGGCTTTGCATATGAGAAGATTGTTCTAATGTTTGACAATCTACATGAGCCTGGCCTATTTGTGTCTCATCCCTGTGTTCTGCGTGCCCTGTTTATTTGTTATTGTACAGTAAACGTTCTGTTAGGATGACTCAACTGTTGAAACGACCATGGTTCACTCAGAGGTTGTTCTTTAATTTCTTCATGAAGCACAGTTACTGTATGTGGTTTGTCTGGCTGCCGTCAATATTCAGCAAATtctgtgagaaaaaaaatctaagttCTGTGGTATTTGGACATTCTTGAGGTTTTACATATTATATCATCAACGTTTAACAGCATCATCATGGCCAATATGACCATCACAGACATATTGGATCAATATACAGAACTTGTTGATAGCTGGGGAGGATTGTATATCATGTTCCATTCATTTAACTCTTTCTCCATTTTCAATTGTTTGGTAATCAAGATGCTTCAAGTTGTGTGCTTGATAgcttattttttgtttatttaccATAAATGTGATATAGATGTTGCATAAGCCTTTTAATACTATTGTATTAACAAACTAAATGTATCTCTGTGAGATGTTATTGAGACTGAATAAAATGTTTCACATTGAAATGTC
>XM_036950698.1
TTGTGCGGGGGAGGGGTCTATGGTGTGGCGTTTTTGTGCTGCCAAAATCTACACTGGGAGAAACAGTTTGGACATCAAGCGGTTCTGTATCAAAAGCGATTTGAGATTCCTGTGTTCCGGACGTCTTCACAGTCCTCTTGGTTTTGAAGAACCTCTCCTTTTGCCTGCGAATATCAAGTTCATACTCGCCTGCAGCAACCTGCCCTGTCTTCTCTGTTGAAGgAAATATATTGAAAATACCTAattcacctttggcagcgattacagctgtgagtctttctggCTAAAAGGAGCAGAGTTTACACAGGAAATATTCTACTCTCCCTGGCAATTGGATGGGAGAAAAGAAAATCTTTGACCTTGGAAATTGAAGATGTTGTTGCCATGGGAACTGTTAATCCTTCTGTCACTCAAGGTCTGCCTTGCTGAGAGAAACCCTCGCCATGGACCCGTCTTCAGTCAAGAACCAAGTGACAGCATTTTCCCCTTGAGGTTTGAGGACAACAAGGTGTTCATCAATTGTAAAGCAAAGGGGAACCCAGCCCCATATTATAAATGGAAGGTTGATGGGAGAGAGATTGACATGGATTTGAACTATAACCTGGTTGAAGGAAACCTGTTGATCAATAACCCTCATGCAACACATCATGGGGGGGTTTACCAGTGTATTGCTACCAATACCTTTGGAACCATCCTCAGCAGGGAGGCCAAGGTGCAGTTTGCATATCTACAGAATTTCAGCAGAAAGCCCAGGAACACAGTGTCAGTGAGAGAAGGCCAGGCAGTGGTGCTACTGTGTGGCCCTCCACCCCATAATGGAGAGATCAAATACTCGTGGGTTTTCAACGGACGCCCAAGTTTCCTGCTGCAGGATACCCGCCGCTTCGTCTCCCAGAGGACAGGcaacctgtacatagccaaagTGGAGGCCTCCGATGTGGGGAACTACACGTGTGTGGTGAGGAACATGATGACCAACGCCACCGTTTACAGCTCGCCCACCCCCGTGGAGCTGCGCAGGGACGCTGTAATGGCAGAGTATGAGCCAAAGATCGAAGTTCAGTTCCCAGAAAGACTTCATGTCACCAAAGGATCATCAGTGAAACTGGAATGCTTCGCCTTAGGAAACCCAGTGCCTGCCATCacatggaggagaacagatgggAATCCCCTCCCTGGCAAGATGAAAATCAACCATTCCAATGGGGTCCTGGAAATACCATATTTCAGACCGGAGGATGCTGGTGCATATGAGTGTGTTGCAGAGAACTCCAGAGGAAAAAACATCGCCAAGGGGCAACTCATATTCCAGAATGTTGAACATCTGCACTGGGTCCAGACATTAAAAGATGCTCATATGGCTATCGAGGCTAATCTTCAGTGGGAGTGTAGGGCGAGCGGTAAACCTAAACCTGTGTACAGATGGCTGAAGAACGGGGAGCccctggtgttggagGACAGGATACTTTTAGAAGGTGGACGATTGGCCATATCCAGGATCAACCTGTTGGACTCTGGGATGTACCAGTGCCTGGCAGAGAACGAACATGGAGCCATCTATGCCAGTGCTGAACTCAAGGTTGTAGCCTCTGCACCTGACTTCTCCAAGAGTCTTGTGAAGAAGTCCATGCTGATCcagagagggggggaggtgaTAATGGAGTGCCGTCCCCATGCGTCCCCAAGGGCCTCCATCTCCTGGCGGAGAGGGGGAGAGTTTCTGAAGGACAGCAGGAGACGGACTATTATGGAGGATGGAACTCTCCGTATCACCAACATCAGCAAATCAGACGGAGGGAGGTACACCTGTGTGGCCAGGAACCCCTTTGGGACATCAAGCAGTACTGGTACTCTGGTGGTGAAAGAGCCAACCAAGATAACGGTTCCACCACTGAGTGTGGATGCCACTGTGGGACAGAGCATCGTGTTGCCATGTGAAGTGTCCCGAGACTCCTCCCTGGATCCCACCTTTAAGTGGTTCTTCAACGGCAAACTCATTGATTTTAACAAACAGGACCACATTGAGATGATAGGAGGGGAATCAGCTGGTGATCTGATGGTCAGGAATATTCAGCTAAAGCATTCTGGGAAGTATGTGTGCATGGTTCACACCGTGGTGGACAGTGTCTCAGCAGCAGCCGACCTCATTGTCAGAGGACCACCCGGTGCCCCAGAGGGCCTCATGGTGGGGGAGATCACTGACTCCAGTGCCCAGCTCTCCTGGGGGTCTGGGCCAGACAACCACAGCCCTGTCACCACATACAGCATCCAGGCCAGGACCCCCTTCTCCATTGGCTGGCAGGCCGTCAGGACAGTTCCTGATTCTGTGCCTGGACAGATGTTTCATGCAACAGTGATAGATTTAAACCCCTGGGTGGATTATGAATTCAGGGTGGTGGCTAGCAACAATGTGGGTGTTGGAGAGCCCAGCATGCAATCCAAGCAGATTCGAACGAAAGCAGCAGTTCCTGAAGTAGCACCGGGTAATgtgagtggaggaggaggtagcCGAGGAGAACTGGTTATCCAATGGGAGCCGATACCAGAGGAACTACAGAATGGAGAGGAATTTGGATATATTGTGGCTTTTCGTTCTCTTGGTACAACCACGTGGAAACAGACTGTGCTGCCTTCACCTGATGCATCAAGATACACATTCAGGAACGACAgcatccctcccctctcccaaTTTGAGGTGAAAGTTGGAGTCTACAACAACGAAGGAGAAGGCCCATCTAGCCATGTGGTTGTAGTGTATTCTGCAGAGGAAGAGCCCTCTATAGCTCCGTCCAGAGTGTTGGCCCGGACGCTATCAGCCTCTGAAATCGAGGTGTACTGGGAACCCATCCCCCAGACAGCCAGCAGTGGGAAGATCATTGGATATGAGGTGCTTTGTTGGGAGGAGGGGGTGCAGGAGAGTGATGCTGAGATGGTGAAGGTCACGGATACTGTGGCCCTTCTCTCTGGACTCATGGGAAGTACGTTGTATCTgatctcagtcagggcccagaaCAGTGCTGGAGCAGGGCCTTCTAGCCCTGCAGTCAATGTCACCACCAAGAAACCACCACCAAGTCAACCTCCAGGGAATATTGAGTGGAACTTGACCAACTCCAAGATCTTTTTAAAGTGGGAGCATGTCAAGGCAATGGGAAATGAGTCTGAGGTGACAGGATACAAGGTGGTGTACCGTCAGAACTGGCTTGGAAAGAGCAGCGTGGTGGAGACCAACAGGACCAGTGTGGAGCTGCAAGTCCCCTCTGGCGAGGACTACCTCATTGAGATCAAAGTCTTGAGTGGTGGAGGTGATGGCAGCAGCAGTGGCCCCATCAGGATACCAAAGATGTCCAGTCTTAACTCAAAGGGCCGTTTCAGCTCAACTCCAATGAACATTTGTGTAGTTATGTTTTTTATACTTTCAAGGTTAACTTTGTAACTTAAAATGCCTTTTATGAACTCTAACTTTGAGAATCATCTACTCAGCAAAGTATGTGGCAGATTATAACAAACTGTTATTTTATGTGTAGCATTCACTTCTCAAGAATGTGAAATCATCAGCTTACTATTTAGAGTATTCAATGCAGCTGCATTGCCTTATATTTGTATGCAGTTTTGTGTTCATTTGTCAACCAAGCTTTTGAGTGTTTTATTTCACTAGATATTATGCAGAAAGGTCAGGCTTTGCATATGAGAAGATTGTTCTAATGTTTGACAATCTACATGAGCCTGGCCTATTTGTGTCTCATCCCTGTGTTCTGCGTGCCCTGTTTATTTGTTATTGTACAGTAAACGTTCTGTTAGGATGACTCAACTGTTGAAACGACCATGGTTCACTCAGAGGTTGTTCTTTAATTTCTTCATGAAGCACAGTTACTGTATGTGGTTTGTCTGGCTGCCGTCAATATTCAGCAAATtctgtgagaaaaaaaatctaagttCTGTGGTATTTGGACATTCTTGAGGTTTTACATATTATATCATCAACGTTTAACAGCATCATCATGGCCAATATGACCATCACAGACATATTGGATCAATATACAGAACTTGTTGATAGCTGGGGAGGATTGTATATCATGTTCCATTCATTTAACTCTTTCTCCATTTTCAATTGTTTGGTAATCAAGATGCTTCAAGTTGTGTGCTTGATAgcttattttttgtttatttaccATAAATGTGATATAGATGTTGCATAAGCCTTTTAATACTATTGTATTAACAAACTAAATGTATCTCTGTGAGATGTTATTGAGACTGAATAAAATGTTTCACATTGAAATGTC

Function

NR:

description
contactin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569830.2 False 4225 mRNA 0.47 23 77335285 77448701
XM_036950698.1 True 4286 mRNA 0.47 24 77335285 77448701

Neighbor

gene id symbol gene type direction distance location
LOC110494606 LOC106565729 coding upstream 74093 77166875 ~ 77261192 (+)
LOC110494602 LOC106565731 coding upstream 662077 76663444 ~ 76673208 (+)
gxylt2 LOC106565732 coding upstream 678218 76640347 ~ 76657067 (+)
LOC110494598 LOC106565734 coding upstream 871789 76459458 ~ 76463496 (+)
zgc:113054 LOC106565741 coding upstream 1246616 76073063 ~ 76088669 (+)
LOC110494608 LOC106565727 coding downstream 103826 77552527 ~ 77771222 (+)
LOC110493259 NA coding downstream 565642 78014343 ~ 78015218 (+)
LOC110494613 NA coding downstream 579890 78028591 ~ 78029532 (+)
lbp/bpi-2 lbp/bpi-2 coding downstream 582786 78031487 ~ 78036695 (+)
tcbp2 tcbp2 coding downstream 602268 78050969 ~ 78053292 (+)
G1490869 LOC106562215 non-coding upstream 42079 77292844 ~ 77293206 (+)
G1490863 NA non-coding upstream 43458 77291594 ~ 77291827 (+)
G1490843 NA non-coding upstream 63687 77271316 ~ 77271598 (+)
G1490673 NA non-coding upstream 182867 77151960 ~ 77152418 (+)
G1490414 NA non-coding upstream 334378 76963380 ~ 77000907 (+)
G1491092 NA non-coding downstream 6898 77455599 ~ 77455965 (+)
G1491113 NA non-coding downstream 25091 77473792 ~ 77474040 (+)
G1491136 NA non-coding downstream 42162 77490863 ~ 77491063 (+)
G1491157 NA non-coding downstream 59704 77508405 ~ 77508852 (+)
G1491158 NA non-coding downstream 60503 77509204 ~ 77509513 (+)
G1490016 NA other upstream 651265 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 2926096 74388428 ~ 74432420 (+)
G1486811 NA other upstream 3355850 73978890 ~ 73979435 (+)
G1485819 NA other upstream 4053266 73281260 ~ 73282019 (+)
G1485260 NA other upstream 4209929 73122826 ~ 73125356 (+)
G1491886 NA other downstream 559589 78008290 ~ 78008799 (+)
G1491899 NA other downstream 569667 78018368 ~ 78019816 (+)
G1491963 NA other downstream 740311 78189012 ~ 78190290 (+)
G1492003 NA other downstream 803928 78252629 ~ 78253308 (+)
G1492310 NA other downstream 1322046 78770747 ~ 78775727 (+)

Expression


Co-expression Network