LOC110494611


Basic Information

Item Value
gene id LOC110494611
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77996734 ~ 77998924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110494611
CAGTACAGCACAGAGATCCAGCCATGGCACCAAGAATCACTTCAGCTATGATCTACTCTAATGAGCACCTGACTCTGACCAACAAGATAAGAAAGCCAGTGGTTGAGAAGTTACACAGAGATCGTTTCAACAACAGCATTGAGCAGCTCAAGTCTCTCTTGGAGAGAGCCTCAACCAGCAGCCAGATTTCAAAAAGGAGAAAGCCAACATCTTAGAGATGACAGTTTGGTTCGTGAGAAGACAGCAACAGTACCAGCCAGTGAGCTCCTCCTCAGCACCATTCAATCAGGGTTACTCAGGTGTGTCCAAGAGATTGTGCACTTCCTGACCAAGGATGAGGTGAAGGCACAGACCCAGAAAAGACTGCTGAGCCACTTCCAGAGCCTGCATCCATCCTCTGATAAGAACAGGAGGGAGAGTGACCTGCCTCAGTTCAGCTCCACAGCCCAGTATAGCACCAGCAAAGAGAAGAGTCCAGACCACACTGCTCTCTGGAGGCCCTGGTAGAGTCCTACAGACTGGAACTCCACTCTCAAACAAACTCAATGGACCATGTTGGTCTAACATTAATGTGATGGACAGTGATCAGAGATCTTCTTCATATTCTGCTTGTGCAGGTTGTTTTAAAAGTTGTGTTTCAATTGAAACTTTTCATTTCAGTTGTACTGAACAAGTAAAACAAAGCTTTTTTGTCTACGAACATCGCATTTTTGTGATGTTAATAACTTTGATGTTTTGTGAAGCATGTGTTGATTATGTGTTTATTCATGATTGACATCAACTTCAATGGTCCTCCATGAGGACTTTTAACCCAAAATGGATATTTTATCTTCAATCATTTTTGATTGTCTATAGAGGCCCACAgcggaggtgtcataatacccaccATTTATTTTTCCCATAGACGATTTTAGAAACACAAAAGATAAGGGCTgcgttttgtgtaggcttaccctggcataACGTTTTGACAACCATTTGTCTCTCGGACAAGGCGACTTTTATCTGTATTTGCTCTCAGATTCAAAAATGACAAtcagcatcaaagtagacatcatgcaaaactacaaatccctgcaagctcctgcacgtcatctctagcggACACATTTGCTAACAgttattgtgtcaatttaaaacttgcacaaaaGAGAAATGTAGCataaagaaatgtagccaatgtAGCCAATGTATTCATTagtacatttagctaacattagataggtAACCCAGaaattcttacctttgcctcgattcgtcAGTCtggtccagatcatcatggcatttgtagttatttatgatagccacattagcagctgaTTAGCATTTAATTTGGGGGGAAAATGCAGGAAAATATATTGATGAAAATCACCTTGTCCTAGATATATATtcatggttatcaaaatgtcacaccagggtaagaCTACAtgtttaagtgtttctaaaatcccttaCGGGAAAAATGAATGTTgtaaaaacaattggaaccatttcgcTGCTTGACCCCCTAGGTTTTTATGGGTGTTATGACTCAGACTGTTGCACTCCATTATCGATCTTTGTAAAGGTCAACTCGTATTGAAGAATAAGCAATTTTGTTACAACTTTGTTGTAATGATATGGTCATATTAACATTATATTGAGCATCTCCTGTGAGGTTTGTATCAGTTAAACATTTGTTATTGATCAACTTGAGCTACAGAATCACTGATTCTCCAAGATGATTATTTACCCAAACTGGGAATTGTACCTGTTATCATCACTCTGTGATTAGAAATCAATGAAAAGTTTAAAGATCAGACCTTGTGTGGGAAAATGTTGCCCacattattttaataatgtggATATTGTAAAGGGGAGAAAATGTTCtctcattatttttttttatagacaATATGTTGTCTTTTATAAAGACAGTAAATGTCCTATACTCTGTTAGAGTATCATATGTCTTGGAGATTGATCCAAGTTCTGGTTGTGATGTGTAATCACCTAAACTATTCACCTTATATTTAGGTGTTCAAGTCTATGATGCGACTCCTTGAGGCAATATCAATAAATCCCAAAAATAAT

Function

NR:

description
PREDICTED: transcription factor HES-5-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110494611 True 2073 mRNA 0.39 2 77996734 77998924

Neighbor

gene id symbol gene type direction distance location
LOC118940494 NA coding downstream 5757 77989900 ~ 77990977 (-)
LOC110495194 NA coding downstream 12254 77983403 ~ 77984480 (-)
LOC110494610 NA coding downstream 20094 77975289 ~ 77976652 (-)
LOC110494609 LOC105017386 coding downstream 40276 77771401 ~ 77956458 (-)
LOC110494605 LOC106565730 coding downstream 909307 77008239 ~ 77087427 (-)
LOC110494616 LOC106565722 coding upstream 63254 78062178 ~ 78072597 (-)
LOC110494615 LOC106565720 coding upstream 76424 78075348 ~ 78084251 (-)
LOC110493260 NA coding upstream 87155 78086079 ~ 78088852 (-)
LOC110494618 LOC106565719 coding upstream 99744 78098668 ~ 78118470 (-)
LOC110493261 NA coding upstream 123771 78122695 ~ 78132472 (-)
G1491870 NA non-coding downstream 5798 77983439 ~ 77990936 (-)
G1491832 NA non-coding downstream 38447 77958066 ~ 77958287 (-)
G1491826 NA non-coding downstream 47979 77947015 ~ 77948755 (-)
G1491825 NA non-coding downstream 48322 77944781 ~ 77948412 (-)
LOC110494612 LOC106582968 non-coding upstream 4228 77996734 ~ 78007395 (-)
G1491887 NA non-coding upstream 9132 78008056 ~ 78008293 (-)
G1491888 NA non-coding upstream 9473 78008397 ~ 78008644 (-)
G1492573 NA non-coding upstream 50339 78049263 ~ 78049672 (-)
G1492574 NA non-coding upstream 50816 78049740 ~ 78050065 (-)
G1491128 NA other downstream 514345 77481941 ~ 77482389 (-)
G1490147 NA other downstream 1298638 76696796 ~ 76698096 (-)
G1488708 NA other downstream 2471138 75525182 ~ 75525596 (-)
G1488266 NA other downstream 2732511 75263720 ~ 75264223 (-)
G1487872 NA other downstream 3096987 74899391 ~ 74899747 (-)
LOC110494620 LOC106565713 other upstream 216075 78214999 ~ 78389849 (-)
G1492729 NA other upstream 474094 78473018 ~ 78475506 (-)
G1492897 NA other upstream 771816 78770740 ~ 78771954 (-)
G1492910 NA other upstream 779428 78778352 ~ 78781395 (-)

Expression


Co-expression Network