lbp/bpi-2 (lbp/bpi-2)


Basic Information

Item Value
gene id lbp/bpi-2
gene name lbp/bpi-2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78031487 ~ 78036695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124198.1
TGCCGCCAGCTAGGGAGCAACAACAACAGAAGAGATCCACTTTCTTACCAGTGCATGAGGTGACTGCAGTCAAAATGTCTCCATGCTGTTTGTTGGCTCTGTTGGCTGTAATCTCCTTAACTCTGGCTGCCAGCCCTGGAGTCAAGGTCAAACTCACAGACAAGGGTATTGAATATGGTAAACAGATTGGGATGGCATCTCTGCAACAGAAGCTTAAGACCATGAAGGTCCCAGATCTCTCTGGAACAGAGAAAGTGCCTCCCATTGGGAAGGTCAAGTACAGTTTGACAGGAATGACCATAGTGAATCTGGGACTTCCCAAGTCTGCTTTGGTACTGATGCCAGGTACTGGAGTCAGGCTGGCTATTACTAATGCCTTCATCAACCTGCACGGGAACTGGAGGGTCCGATACTTCAGGTTCATACAAGACCGTGGCTCCTTCGACCTGGCGATAAATGGACTCACCATCACTGCCGATATTGCAATCAAGAGTGATGAAACTGGCAGGCCAACGGtcagcactgtcaactgtgtggcCAACGTGGGCAGCGCCAGCATCAAGTTCCATGGCGGGGCCAGCTGGCTTTACAATCTTTTCAAGTCCTACATTGACAAGGCCCTGCGCAGTGCTCTGCAGAAACAGATCTGCCCCCTAGTGGCTGATGTTATTACTGACATGAACCCACACCTCAAAACGTTCAATGTTCTAGCCAAAGTGGACCAGTATGCTGAAATTGAAtattccatggtgacatcacccaCCATTTCAAAGTCCTCCATTGAATTCAGCTTGAAGggtgagtTCTACAACATTGGGAAGCACCAGGAGCCTCCGTTCTCTCCCACGCCCTTCTCGCTGCCTCCTCAGGACAACAACATGCTCTACATCGGGGTCTCTTCCTTCACCCCCAACTCTGCAGGCTTTGTGTACAACAATGCTGGAGCACTCAGCCTATATGTCACAGATGATATGATCCCTCCTAGCTCTCCCATCCGTCTGAACACTGGAACGTTTGGAGTCTTCATTCCAGAGATAGCGAAGCGTTTTCCTGGAATGATGATGAAACTGCTGGTGAAGACGGTGAAGGAGCCCACCATCTCTCTTGAGCCCAACAACGTGACAGTCCAGGCCAGCGGCACAGTGACGGCCTACGCCATCCAGCCCAACACcacgctctctcccctctttgtCCTCAACatgGAGGGTAGTGTCAGCGCTCAAATGAACGTGACTGGGGTGAAGCTGGCTGGGGCTATCACTCTGAACAAAATTGAGATGACATTGGGAACTAGTTATGTGGGACAATTTCAGGTTCAATCCCTTGACAACATCTTCCTGATGGTTCTGAAAGTGGTTGTGATACCTAAGGTCAATGCTCGCCTAGAGAAGGGTTTTCCCCTGCCCACTATTGGAAAGATGAACCTTATCAACACTCAACTGCAAGTCCTGAAGGACTACATGCTGATTGGGACAGATGTTCAGTTCACAGGATAAGTCCCATGTAAATCCCAGTGCAAGTCATCATTAATCGATGATTGATCATGCATCAaatcataaatcaaatcaaaccaatgAGACATGTAATTAATGTTTGCAAATCAAATctattatactgtacatatatactCTCAAACAATGCACCACATTCTGAAATGAAATACTGTATCTTCCAATCTTTTCAGTATTCTACTACTATTCAGTGTTGTAATTTATATTGAATACAtttgtataaataaaca

Function

NR:

description
LBP (LPS binding protein)/BPI (bactericidal/permeability-increasing protein) like-2 precursor

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124198.1 True 1741 mRNA 0.47 16 78031487 78036695

Neighbor

gene id symbol gene type direction distance location
LOC110494613 NA coding upstream 1955 78028591 ~ 78029532 (+)
LOC110493259 NA coding upstream 16269 78014343 ~ 78015218 (+)
LOC110494608 LOC106565727 coding upstream 260265 77552527 ~ 77771222 (+)
LOC110494607 LOC106565728 coding upstream 582786 77335285 ~ 77448701 (+)
LOC110494606 LOC106565729 coding upstream 770295 77166875 ~ 77261192 (+)
tcbp2 tcbp2 coding downstream 14274 78050969 ~ 78053292 (+)
LOC118940495 tcbp2 coding downstream 19630 78056325 ~ 78060810 (+)
si:ch73-303b9.1 LOC106565721 coding downstream 48027 78084722 ~ 78085995 (+)
LOC110494621 LOC105017400 coding downstream 354210 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 359541 78396236 ~ 78412856 (+)
G1491892 NA non-coding upstream 20700 78010586 ~ 78010787 (+)
G1491889 NA non-coding upstream 21364 78009105 ~ 78010123 (+)
G1491885 NA non-coding upstream 23234 78008029 ~ 78008253 (+)
G1491831 NA non-coding upstream 73681 77957603 ~ 77957806 (+)
G1491417 NA non-coding upstream 162572 77794792 ~ 77868915 (+)
G1491925 NA non-coding downstream 49372 78086067 ~ 78086589 (+)
G1491928 NA non-coding downstream 53484 78090179 ~ 78090496 (+)
G1491939 NA non-coding downstream 85634 78122329 ~ 78122539 (+)
G1491941 NA non-coding downstream 87531 78124226 ~ 78125219 (+)
G1491947 NA non-coding downstream 96493 78133188 ~ 78133414 (+)
G1491899 NA other upstream 11671 78018368 ~ 78019816 (+)
G1491886 NA other upstream 22688 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1347467 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3622298 74388428 ~ 74432420 (+)
G1486811 NA other upstream 4052052 73978890 ~ 73979435 (+)
G1491963 NA other downstream 152317 78189012 ~ 78190290 (+)
G1492003 NA other downstream 215934 78252629 ~ 78253308 (+)
G1492310 NA other downstream 734052 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1292924 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1345950 79382417 ~ 79387551 (+)

Expression


Co-expression Network