tcbp2 (tcbp2)


Basic Information

Item Value
gene id tcbp2
gene name tcbp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78050969 ~ 78053292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947917.1
taatcaATAACTTGGAATTCAGGGTTTGGGTTATCAGTGTCACATGTTTTGAAATGGATTTCTAAGAGTTTGGGtgagtgtatatatactgtacagtttGAGAGGCAcactaggtagccatttgataagGCGGATCAACAATGagAGGCCCATGAGAAGATCCTTGGTGTTCCCAATGGAAACTGACAACAGCTACGTGGAGCTGGTCCCTCAGAAGGATCTTGACATGGGAGCCTTCACCCTGTGCATGCGGGTGGCCACAGAATTGGCAGAGGGCAATCGTGAGATCATCTTGTTCGCCTACCGTACACTGTACCACGACGAGCTCAACGTGTGGAGAGAAGCTGACGGCAGGTACGGTCTGTATTTGAGTGGGGACGGGGTCCTCTTCCACCTACCAGAGCTCAACACCTTCCAGACCCACCTCTGTCTCACCTGGGACTCGAAGTTAGGTATGGCTGCGTTCCACGTAGATGGGAAGAGGAGCATTAGGAAGGTGTATAAACCAGGACACAAAGTGCAGAAGGGAGGTAAGGTCATCCTGGGACAGGATCCAGACTCTTTCCTGAAGGACTTTGACAGCAAGCAGAGTTTCATCGGAGAGATCACAGACGTCAACATGTGGGACTACGTGCTCTCCGATGCCATGATAGAGGCTTTGCATGTTGGGAAACGTATGCCCAGAGGGAACATTTTTGACTGGGAAACCATAGAGCTCATAGTCAATGGGAACGTCAAGGTGATCACTGAAGAGTTGTAAGGTGTCCCCAAGGCACCAACAACATGCTCTCCATCCAGGGGTGCTGCACTGCGGCCTGACCCTGTGCTCTCTcaactgtgtgtcagtgtgatgtACATTATCTGAGGAAGTTAAGAAATTACAGAAAATTCATATGGAGAATAAAGTTGTATTAGTTTGAGTCCCTGTCTCATCTCAACAAATATAAAGTTCCCAACGGGCA
>XM_036947916.1
GTTTGGGTTATCAGTGTCACATGTTTTGAAATGGATTTCTAAGAGTTTGGGtgagtgtatatatactgtacagtttGAGAGGCAcactaggtagccatttgataagGCGGATCAACAATGGCTCTGTGGGATAAAATGGGGCTGCTGGCAACTCTTCTCATCtttggtgtctctctctccttagcTTCTGCAGagAGGCCCATGAGAAGATCCTTGGTGTTCCCAATGGAAACTGACAACAGCTACGTGGAGCTGGTCCCTCAGAAGGATCTTGACATGGGAGCCTTCACCCTGTGCATGCGGGTGGCCACAGAATTGGCAGAGGGCAATCGTGAGATCATCTTGTTCGCCTACCGTACACTGTACCACGACGAGCTCAACGTGTGGAGAGAAGCTGACGGCAGGTACGGTCTGTATTTGAGTGGGGACGGGGTCCTCTTCCACCTACCAGAGCTCAACACCTTCCAGACCCACCTCTGTCTCACCTGGGACTCGAAGTTAGGTATGGCTGCGTTCCACGTAGATGGGAAGAGGAGCATTAGGAAGGTGTATAAACCAGGACACAAAGTGCAGAAGGGAGGTAAGGTCATCCTGGGACAGGATCCAGACTCTTTCCTGAAGGACTTTGACAGCAAGCAGAGTTTCATCGGAGAGATCACAGACGTCAACATGTGGGACTACGTGCTCTCCGATGCCATGATAGAGGCTTTGCATGTTGGGAAACGTATGCCCAGAGGGAACATTTTTGACTGGGAAACCATAGAGCTCATAGTCAATGGGAACGTCAAGGTGATCACTGAAGAGTTGTAAGGTGTCCCCAAGGCACCAACAACATGCTCTCCATCCAGGGGTGCTGCACTGCGGCCTGACCCTGTGCTCTCTcaactgtgtgtcagtgtgatgtACATTATCTGAGGAAGTTAAGAAATTACAGAAAATTCATATGGAGAATAAAGTTGTATTAGTTTGAGTCCCTGTCTCATCTCAACAAATATAAAGTTCCCAACGGGCA
>NM_001281421.1
ATAAAATGGGGCTGCTGGCAACTCTTCTCATCtttggtgtctctctctccttagcTTCTGCAGagAGGCCCATGAGAAGATCCTTGGTGTTCCCAATGGAAACTGACAACAGCTACGTGGAGCTGGTCCCTCAGAAGGATCTTGACATGGGAGCCTTCACCCTGTGCATGCGGGTGGCCACAGAATTGGCAGAGGGCAATCGTGAGATCATCTTGTTCGCCTACCGTACACTGTACCACGACGAGCTCAACGTGTGGAGAGAAGCTGACGGCAGGTACGGTCTGTATTTGAGTGGGGACGGGGTCCTCTTCCACCTACCAGAGCTCAACACCTTCCAGACCCACCTCTGTCTCACCTGGGACTCGAAGTTAGGTATGGCTGCGTTCCACGTAGATGGGAAGAGGAGCATTAGGAAGGTGTATAAACCAGGACACAAAGTGCAGAAGGGAGGTAAGGTCATCCTGGGACAGGATCCAGACTCTTTCCTGAAGGACTTTGACAGCAAGCAGAGTTTCATCGGAGAGATCACAGACGTCAACATGTGGGACTACGTGCTCTCCGATGCCATGATAGAGGCTTTGCATGTTGGGAAACGTATGCCCAGAGGGAACATTTTTGACTGGGAAACCATAGAGCTCATAGTCAATGGGAACGTCAAGGTGATCACTGAAGAGTTGTAAGGTGTCCCCAAGGCACCAACAACATGCTCTCCATCCAGGGGTGCTGCACTGCGGCCTGACCCTGTGCTCTCTcaactgtgtgtcagtgtgatgtACATTATCTGAGGAAGT

Function

NR:

description
trout C-polysaccharide binding protein 2 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947917.1 False 962 mRNA 0.48 2 78050969 78053292
XM_036947916.1 False 1012 mRNA 0.49 3 78050992 78053292
NM_001281421.1 True 791 mRNA 0.52 2 78051765 78053201

Neighbor

gene id symbol gene type direction distance location
lbp/bpi-2 lbp/bpi-2 coding upstream 14274 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 21437 78028591 ~ 78029532 (+)
LOC110493259 NA coding upstream 35751 78014343 ~ 78015218 (+)
LOC110494608 LOC106565727 coding upstream 279747 77552527 ~ 77771222 (+)
LOC110494607 LOC106565728 coding upstream 602268 77335285 ~ 77448701 (+)
LOC118940495 tcbp2 coding downstream 3033 78056325 ~ 78060810 (+)
si:ch73-303b9.1 LOC106565721 coding downstream 31430 78084722 ~ 78085995 (+)
LOC110494621 LOC105017400 coding downstream 337613 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 342944 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 369695 78422987 ~ 78425996 (+)
G1491892 NA non-coding upstream 40182 78010586 ~ 78010787 (+)
G1491889 NA non-coding upstream 40846 78009105 ~ 78010123 (+)
G1491885 NA non-coding upstream 42716 78008029 ~ 78008253 (+)
G1491831 NA non-coding upstream 93163 77957603 ~ 77957806 (+)
G1491417 NA non-coding upstream 182054 77794792 ~ 77868915 (+)
G1491925 NA non-coding downstream 32775 78086067 ~ 78086589 (+)
G1491928 NA non-coding downstream 36887 78090179 ~ 78090496 (+)
G1491939 NA non-coding downstream 69037 78122329 ~ 78122539 (+)
G1491941 NA non-coding downstream 70934 78124226 ~ 78125219 (+)
G1491947 NA non-coding downstream 79896 78133188 ~ 78133414 (+)
G1491899 NA other upstream 31153 78018368 ~ 78019816 (+)
G1491886 NA other upstream 42170 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1366949 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3641780 74388428 ~ 74432420 (+)
G1486811 NA other upstream 4071534 73978890 ~ 73979435 (+)
G1491963 NA other downstream 135720 78189012 ~ 78190290 (+)
G1492003 NA other downstream 199337 78252629 ~ 78253308 (+)
G1492310 NA other downstream 717455 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1276327 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1329353 79382417 ~ 79387551 (+)

Expression


Co-expression Network