si:ch73-303b9.1 (LOC106565721)


Basic Information

Item Value
gene id si:ch73-303b9.1
gene name LOC106565721
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78084722 ~ 78085995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569840.2
cTTTTTGCTTAATTATACACCCCCCTCCACCTTGTCGTTGCGGGCCTTCATTACCAAACAGGTGAGACAATCAACCAGCAGATTAAAAACAAGCTGCATTGTGGTTAGGCAACCATTCAATGATTATCTAAAAACATGGATGAGGAGCTTGCCAGTGCTGATGCGTCCATGAGTTTTCAGTGCCCATCTCCCTCAGCGCTCGACAAAGGCTTCTTGGACCAGAGTTTATCTGCGTCTGCTCTGTCACTGACGGGACAGTCCACATCGGTGCTGCCTCCAAATAGAATTGTTGTTGAGTACTATGGTTCCAAACAATCCCTCCTCGCCTCCCTGTGTCAGTCTCCCAACCCTGTGTCCCCCTCTCAAGCCATGAACCTGAACTCTAAGGAGGCTACACAAACACCAGGGCTCACTATACCTGTAGAGAGCAAGTCCTCTACTCCTGCTGAGCAGGTCCTCCTCCAGAAACCCAAACTAGCCTGCCCATTGGATCTGTCCTACATTGATCTGACTGCCTCGCAGGTTGCCTGGGAGGTCTCCCTAATCAAACCTGAGACTAACAGTCCAAAACCGATCCTTGAGTCAAGCACGTTGGAGACTACCTGGAGTCCCAAGTTCCAGTCTGCACCACCATCCCTGGCTGAGATCTCCCTGATCTGGTCAGGCTCACCCCCACATGGAAATGACACAGAGGACAACCAAAGGTCCTGGAAGGAGGTCACTATGGCTTCGAGTCTCAGTTCCAGCCTGAGCCAGATCTCAGGTTCAGCAGCTGAGGATGAATGGCAGAGACGCACAGCCATCCCTACAGGTTTTGACAAGCCAAAGTGGGGATGTGACAGTGCTGTACTGAAAAGTTGAGACCTTAAGGAGGATATTCAAGATGCCTGTGAATTTTATTTTACATGAACCTATTATAGTAAATAAAGTTGTGTATTGCTTAAATCGA
>XM_021569842.2
AATTTGACTCTCTGCATAGGATGCGTCCATGAGTTTTCAGTGCCCATCTCCCTCAGCGCTCGACAAAGGCTTCTTGGACCAGAGTTTATCTGCGTCTGCTCTGTCACTGACGGGACAGTCCACATCGGTGCTGCCTCCAAATAGAATTGTTGTTGAGTACTATGGTTCCAAACAATCCCTCCTCGCCTCCCTGTGTCAGTCTCCCAACCCTGTGTCCCCCTCTCAAGCCATGAACCTGAACTCTAAGGAGGCTACACAAACACCAGGGCTCACTATACCTGTAGAGAGCAAGTCCTCTACTCCTGCTGAGCAGGTCCTCCTCCAGAAACCCAAACTAGCCTGCCCATTGGATCTGTCCTACATTGATCTGACTGCCTCGCAGGTTGCCTGGGAGGTCTCCCTAATCAAACCTGAGACTAACAGTCCAAAACCGATCCTTGAGTCAAGCACGTTGGAGACTACCTGGAGTCCCAAGTTCCAGTCTGCACCACCATCCCTGGCTGAGATCTCCCTGATCTGGTCAGGCTCACCCCCACATGGAAATGACACAGAGGACAACCAAAGGTCCTGGAAGGAGGTCACTATGGCTTCGAGTCTCAGTTCCAGCCTGAGCCAGATCTCAGGTTCAGCAGCTGAGGATGAATGGCAGAGACGCACAGCCATCCCTACAGGTTTTGACAAGCCAAAGTGGGGATGTGACAGTGCTGTACTGAAAAGTTGAGACCTTAAGGAGGATATTCAAGATGCCTGTGAATTTTATTTTACATGAACCTATTATAGTAAATAAAGTTGTGTATTGCTTAAATCGA

Function

NR:

description
uncharacterized protein LOC110494617 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569840.2 False 949 mRNA 0.49 3 78084722 78085995
XM_021569842.2 True 809 mRNA 0.50 3 78084910 78085995

Neighbor

gene id symbol gene type direction distance location
LOC118940495 tcbp2 coding upstream 23912 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 31430 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 48027 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 55190 78028591 ~ 78029532 (+)
LOC110493259 NA coding upstream 69504 78014343 ~ 78015218 (+)
LOC110494621 LOC105017400 coding downstream 304910 78390905 ~ 78395729 (+)
odad1 LOC106565714 coding downstream 310241 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 336992 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 456456 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 468608 78554603 ~ 78576168 (+)
G1491892 NA non-coding upstream 73935 78010586 ~ 78010787 (+)
G1491889 NA non-coding upstream 74599 78009105 ~ 78010123 (+)
G1491885 NA non-coding upstream 76469 78008029 ~ 78008253 (+)
G1491831 NA non-coding upstream 126916 77957603 ~ 77957806 (+)
G1491417 NA non-coding upstream 215807 77794792 ~ 77868915 (+)
G1491925 NA non-coding downstream 72 78086067 ~ 78086589 (+)
G1491928 NA non-coding downstream 4184 78090179 ~ 78090496 (+)
G1491939 NA non-coding downstream 36334 78122329 ~ 78122539 (+)
G1491941 NA non-coding downstream 38231 78124226 ~ 78125219 (+)
G1491947 NA non-coding downstream 47193 78133188 ~ 78133414 (+)
G1491899 NA other upstream 64906 78018368 ~ 78019816 (+)
G1491886 NA other upstream 75923 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1400702 76683599 ~ 76684020 (+)
LOC110493252 LOC106565788 other upstream 3675533 74388428 ~ 74432420 (+)
G1486811 NA other upstream 4105287 73978890 ~ 73979435 (+)
G1491963 NA other downstream 103017 78189012 ~ 78190290 (+)
G1492003 NA other downstream 166634 78252629 ~ 78253308 (+)
G1492310 NA other downstream 684752 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 1243624 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 1296650 79382417 ~ 79387551 (+)

Expression


Co-expression Network