LOC110494621 (LOC105017400)


Basic Information

Item Value
gene id LOC110494621
gene name LOC105017400
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78390905 ~ 78395729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569847.2
aaaaatgtttcagGAAGTATTGGTAGCTACCAGGAAGTTGTAAACAATAAATACAACAACGAAGCTAGCTGTACGTTGTACTAAATCTGTGACCGCAACGAATTAACGTTAGTCGTTGAAGAGCAGGTTGAAGATAAATAGAAAATGGCAAGAGCTAATTTGAACATCTGATGGTGCTGTGTTATTATGGTCACTCTCGTGATGTTAGCTTGTGGCTCTGTTTTGACAAGTAGATAGCTACTGTAGATTGCTATCAACCACATTATTCGCTATCAACAAGGATCGATAACTATCTAGCTAAACCTCCAATATAACATTAGACGTGGAAACGTCTAATTTGTGGCTTCTCTTTTATAATTCACCTGCTGCTAACTTCCAGCTAACTGTTGATAGCTAGTCAAcgaactagctagctatttagtAACAATAATAGTGAATAGTTAGTTAGCTAAATAGCGTTTTAAATAACGTTAGCGTCAGATCAGCTACCATTGCTACATTGATCGATCTGTTCTGACGCACATTTCCTCTGGACATCGGGATTCGAAAGCTAGAAGAACAGTATTTAAAGAGCATGTCTACCTCCAACTTCAAAAACAAATGTGTCACTCAAGTGAATTGTATATACTGTGAGAGTCTACTCTGCACAAGAGGAATGAAGGCAGTACTTCTCGCAGACACAGAAATTGAGCTGTTCTCTACTGACATACCGCCCAACAGAAGTGTTGACTTTGTGGCCAGCTGCTACTCTACAGAGAGCTGCAAATGCAAACTGAGAGACATCGCCTGTCTGAAATGtgGTAATTTTGTGGGGTATCACGTGGTAGCCCCATGTAAgccctgcctgctgtcctgtaacAATGGCCATTTCTGGATGTTTAACAGTGATGCTGTGTCCACCCTTAACAGATTGGATCCTACAGGTTTGAACCTATTGCTGTGGGGAGACCTTCCCGAGCTGGAGGACAGTGAGAACGAGGGATCAGACACCCCATCGGAGGAGGAGTGCATCAGGTAGAGAGCGATGGATGACCGATGgaagagaaacagaagagaggcCTTACCCTGTGAccatattcccccccccccccccccccccccttcccaaaAGCACACAATCCCCACGCATTCTACGCATTCACGCATTTCGGTTAcgcgttggacaagtaaccgaaaggttgcgaggTCGAATCCtcaagccgacaaggtaaaaatctgtcgttctacccctgaacaaggcagttaacctcctgttcctaggctgtcattgaaaataagaatttgttcttaactgacttgcctaggtaaataaaggtaaaaaaatatacaattcTTAAATCTCTCTCTCGGTTGGGGGGAATCAATGGTAGAACTGGACTGTCGGAACTGCCTTCTCTCTTTAAACTCACCACTGAATCCCCATTCAAACAAACTCATTAGCTTTCGGTTTCACTGGCGGGTGGATGTCTTAACATTTCGCATGGCTGTTTTATACCCTTTGGGTAGCCTATTGCCATTGGACGCTGGATTGAACTTTGTACGTTGTATTTTAGGTTTTCTTCAGTCCTTTGTTAGTGCTTGAACAATCGATTACAATGATGTTGTGTTTAGGTTTTAGAAACTGACATTGTTGACCTTAAGTATTTGCCAGTTATCTTGCATTGGTCTTTCATGAGGAGGGCCAGTGTCACCAACAGATGGTACTAGTACATAAAGTATAGGTACGTGTTTGGTTCTAGGGCTCCTCAGTGATGGGATAGAGGGTACTCAATAAAAATAGAGGAGGCCCAATTACACACATGGCAAAGGAGCTGGAAAGAAAATACATGATCATGAAAGGAAAGTCAATGTCCACTCATTCTTACATTGTTGATATAGTAAAAACATTGCAGCAAAAACAGTGAAAGAAAATGTACCTTATATTCCGAGCAGATATCCTAACCCTGTATGATTCAACGCTGAACTGTTGTGTGCTTGAAAGAGCACAATGAATGAGTATATAGATCTGAGTATACTGTGAATCTGAGTATAGGAGTCACTTGTGGATAGAGCTGACCTTTCCATTGCTGCAGAAGCTTTTGCTTCAGACAACGTTCTAGACTTGTATTCTAATGGCCTTGGATCTGATTTTGTGAAGAACTGTGGGCTCACTGTCATTGTAGTTCATGCTTACCCTCTCACTGGAAGTAAATGTTTCAGCTTTTTTGTGACGCTTCGGTGCCCAGCAAGTACTGTCACAATGAGTAACATATCTTAAAGTAGCATTTAATATACCTCCCAGTTCAAACAGACAAGCTATGCCTGTATTAACAAGGATATGTTGAAGCTCCAATTGAAAAGTATTTGTTTTGTGGTCATAACTGACAGTATGAAAGCTGGACGTACACACCAAATACCTGAGATGGCAGTCACCAATTAAAGATTCCTGTCTGTAGCAATTATTTATTTAAGGTATGTTCTAAGCTCTGGCTAAGTGTATTGCATCTTGTGATATAATATACAAAATTAATAGAAAATTATGATCCAAATCATACAGACCAAATATCTTTAACCACTTATTTTCCTTTTGTTTACAATAGTTGTATTTTATTTACAAAAGCAATGTTTTGTAGTGTGCTGTATTTTTTCTGTTTCTATTTGACATTTCTCTTGCATTTGAGTTTTTTATGTTTGGAGGCTGATACCTTAGTGAAGGTAGCTAGTGATCAGCTGAGAGCTTCCTATGGCATAGACCATAGTTGGGAGATATTCAACCACTATCAaaacagtgatttttttttttttatatatatatttttatctgaCTTTAATATGATTAATTTAAGTAGTGTGGTTTTATGTatcaatttgtatttatttattaacaaACATATTGCTGTCTTTATACTGATGTTATTTGCCCtgctgaaaaaatatattttgaaatgcCACTGATCCTGAATTGGTCGTTTGAAACATTACTTTTTTTTATGCTTATTGTATTGATAATACACCTTTTCCAAAAta

Function

NR:

description
protein FAM72A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569847.2 True 3006 mRNA 0.39 4 78390905 78395729

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC106565721 coding upstream 304910 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 330095 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 337613 78050969 ~ 78053292 (+)
lbp/bpi-2 lbp/bpi-2 coding upstream 354210 78031487 ~ 78036695 (+)
LOC110494613 NA coding upstream 361373 78028591 ~ 78029532 (+)
odad1 LOC106565714 coding downstream 507 78396236 ~ 78412856 (+)
LOC110494624 LOC106565712 coding downstream 27258 78422987 ~ 78425996 (+)
LOC110494627 LOC106565937 coding downstream 146722 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 158874 78554603 ~ 78576168 (+)
LOC110494629 LOC106565708 coding downstream 201411 78597140 ~ 78640882 (+)
G1492083 NA non-coding upstream 3471 78386899 ~ 78387434 (+)
G1492080 NA non-coding upstream 7860 78382816 ~ 78383045 (+)
G1492009 NA non-coding upstream 129575 78261121 ~ 78261330 (+)
G1492007 LOC106565713 non-coding upstream 132617 78258033 ~ 78258288 (+)
G1492005 NA non-coding upstream 135558 78255136 ~ 78255347 (+)
G1492099 NA non-coding downstream 38321 78434050 ~ 78434317 (+)
G1492106 NA non-coding downstream 45049 78440778 ~ 78440987 (+)
G1492125 NA non-coding downstream 85051 78480780 ~ 78483600 (+)
G1492219 NA non-coding downstream 228989 78624718 ~ 78630403 (+)
G1492003 NA other upstream 137597 78252629 ~ 78253308 (+)
G1491963 NA other upstream 200615 78189012 ~ 78190290 (+)
G1491899 NA other upstream 371089 78018368 ~ 78019816 (+)
G1491886 NA other upstream 382106 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1706885 76683599 ~ 76684020 (+)
G1492310 NA other downstream 375018 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 933890 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 986916 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2897711 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2941288 81337017 ~ 81338163 (+)

Expression


Co-expression Network