LOC110494624 (LOC106565712)


Basic Information

Item Value
gene id LOC110494624
gene name LOC106565712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78422987 ~ 78425996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569855.2
TTTGGATTGCCCAATCACGTTTTCAATCGACCAGCTCCATTCTAACTAATGGATTACAGTCGAGCCTAACAAACAGATGTAACTGGTTTTCAtcattctcttctcttcttctcagCCTCTCACAGAAATCACTGCCAGAAACATCGAGGCATCAAACACAGTATTTATTTCGGAAACATATCATACCCTTAGATTCAACTAAATATGGCTGATACCGCAGTAGACACTACCACAACTACCGAGATTTCAGCAAAGGAGCTCAAAGAGAAGAAAGAGGTTGtcgaggaggtggaggagaaggagaatggCAGCGGGGACGCACCAGCCAACGGCAATGGAACACACACAAATGGTGCAGAGACAAAGACAAATGGTGCAGACGATTCTGAAGAAACCCCTGTGTGTgagaaggaagaagaggatgGAGAGGGACTGGATGCAGCCAAGGATGCAGAAGAAGTTGCTGGTGAGGAGGTTGACCACCCGGTGAAGCTCCCAGCTGATGAGGTTGAACACCCTGTGAAGCGCCCAGCTGATGATGAGGTTGACCACCCGGTGAAGCTCCCAGCTGATGAGGTTGACCACCCTGTGAAGCGCCCAGCTGATGAGGAGGACCAATtggaaacaaaaaaacagaaaacagaaaacggTGAATCAAAGGAAGCTGAAGTGAAGGCATAGTGTGCAGAGTATGTACTCCTCTGAAACGCTGTCTACATGGCACGTTCAACTTCACCTTGTAGAGCTTGTGCTTTATGTATGCTTTACAGATTTTGTTTGTCTCCAAGATATTACATTGCACTGGAGTCCTAAAACATAGAGGCCGCTCCTCTCTTTTTATAAACTGTTATTTATTGGTTTCTTAAGCAATCTTAACAAAACAATCTGTGCTATTTTATCGGTTTTGTTATTTCGTATGAGTTAAGCACATTCTCTACATAGTTAACTGCTGACCAGCTGATTCAGAGACAGACAGCTGTAACCTTCTCCACATGTTCAGGGTGACTTCTCAGACTCACTGAAGACCAAAGATAAGTTTTAAGCAGGGGCTAATGGACTATTGTTAGCATTATTAATTCAGGCTTTTTTAATCCTTTTTGTTTACTGCTGCTAGTAGTTAATCCTTTGCCAGGCTGATCTGTTAACACAACAGATGGCACAAATGGAAGAACGCCTCCATGATAAAAGACGCTTGACCCTGTTTGGGGGGCTGGCTTCTGCAATGTTAATTACCCCCTCTTAAATCTTAGGGCTTTGGTCATGTTCTGTATGCATTTCACACACGTTTGTACCATTTGTACCCAAGATACTGTTTCTTTTTTTGGTTTCATTTGAGGTTATTATGTTATGTCTGGGTGACTCAGAAATTGTGTCTACAACGGTCTTTATCAATATCATTCCCACCCTGGTGTTCTTAGTCTCTTCTTGTGCAGTTATATTTCATGATTGCTATTTGGTTGCTTCGACCACTGCTTTGTATATTCTGGTTCTTGATGATTAAATAAATCAGTCTTGTCTTTTTaccaattttttaaaattttgcaTAGACTGATAGTTCAGTGTAGCTTTTCACGTCCATTCTTAAATAAGATGCTGAATAGCTTTTTAGTGTTATAATCAAATTACAATTGTGATACTAGTGTTTGAACTGAAAGTATATCTTATTAAATTGTTAAAATTGTCCTAGC
>XM_021569857.2
CGAGCCTAACAAACAGATGTAACTGGTTTTCAtcattctcttctcttcttctcagCCTCTCACAGAAATCACTGCCAGAAACATCGAGGCATCAAACACAGTATTTATTTCGGAAACATATCATACCCTTAGATTCAACTAAATATGGCTGATACCGCAGTAGACACTACCACAACTACCGAGATTTCAGCAAAGCACACAAATGGTGCAGAGACAAAGACAAATGGTGCAGACGATTCTGAAGAAACCCCTGTGTGTgagaaggaagaagaggatgGAGAGGGACTGGATGCAGCCAAGGATGCAGAAGAAGTTGCTGGTGAGGAGGTTGACCACCCGGTGAAGCTCCCAGCTGATGAGGTTGAACACCCTGTGAAGCGCCCAGCTGATGATGAGGTTGACCACCCGGTGAAGCTCCCAGCTGATGAGGTTGACCACCCTGTGAAGCGCCCAGCTGATGAGGAGGACCAATtggaaacaaaaaaacagaaaacagaaaacggTGAATCAAAGGAAGCTGAAGTGAAGGCATAGTGTGCAGAGTATGTACTCCTCTGAAACGCTGTCTACATGGCACGTTCAACTTCACCTTGTAGAGCTTGTGCTTTATGTATGCTTTACAGATTTTGTTTGTCTCCAAGATATTACATTGCACTGGAGTCCTAAAACATAGAGGCCGCTCCTCTCTTTTTATAAACTGTTATTTATTGGTTTCTTAAGCAATCTTAACAAAACAATCTGTGCTATTTTATCGGTTTTGTTATTTCGTATGAGTTAAGCACATTCTCTACATAGTTAACTGCTGACCAGCTGATTCAGAGACAGACAGCTGTAACCTTCTCCACATGTTCAGGGTGACTTCTCAGACTCACTGAAGACCAAAGATAAGTTTTAAGCAGGGGCTAATGGACTATTGTTAGCATTATTAATTCAGGCTTTTTTAATCCTTTTTGTTTACTGCTGCTAGTAGTTAATCCTTTGCCAGGCTGATCTGTTAACACAACAGATGGCACAAATGGAAGAACGCCTCCATGATAAAAGACGCTTGACCCTGTTTGGGGGGCTGGCTTCTGCAATGTTAATTACCCCCTCTTAAATCTTAGGGCTTTGGTCATGTTCTGTATGCATTTCACACACGTTTGTACCATTTGTACCCAAGATACTGTTTCTTTTTTTGGTTTCATTTGAGGTTATTATGTTATGTCTGGGTGACTCAGAAATTGTGTCTACAACGGTCTTTATCAATATCATTCCCACCCTGGTGTTCTTAGTCTCTTCTTGTGCAGTTATATTTCATGATTGCTATTTGGTTGCTTCGACCACTGCTTTGTATATTCTGGTTCTTGATGATTAAATAAATCAGTCTTGTCTTTTTaccaattttttaaaattttgcaTAGACTGATAGTTCAGTGTAGCTTTTCACGTCCATTCTTAAATAAGATGCTGAATAGCTTTTTAGTGTTATAATCAAATTACAATTGTGATACTAGTGTTTGAACTGAAAGTATATCTTATTAAATTGTTAAAATTGTCCTAGC

Function

NR:

description
prothymosin alpha-B-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569855.2 False 1688 mRNA 0.41 5 78422987 78425996
XM_021569857.2 True 1541 mRNA 0.40 4 78423047 78425996

Neighbor

gene id symbol gene type direction distance location
odad1 LOC106565714 coding upstream 10154 78396236 ~ 78412856 (+)
LOC110494621 LOC105017400 coding upstream 27258 78390905 ~ 78395729 (+)
si:ch73-303b9.1 LOC106565721 coding upstream 336992 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 362177 78056325 ~ 78060810 (+)
tcbp2 tcbp2 coding upstream 369695 78050969 ~ 78053292 (+)
LOC110494627 LOC106565937 coding downstream 116455 78542451 ~ 78553518 (+)
LOC110494628 LOC106565709 coding downstream 128607 78554603 ~ 78576168 (+)
LOC110494629 LOC106565708 coding downstream 171144 78597140 ~ 78640882 (+)
LOC110494631 LOC106582819 coding downstream 227595 78653591 ~ 78669747 (+)
LOC110494632 LOC106565705 coding downstream 248381 78674377 ~ 78681299 (+)
G1492083 NA non-coding upstream 35553 78386899 ~ 78387434 (+)
G1492080 NA non-coding upstream 39942 78382816 ~ 78383045 (+)
G1492009 NA non-coding upstream 161657 78261121 ~ 78261330 (+)
G1492007 LOC106565713 non-coding upstream 164699 78258033 ~ 78258288 (+)
G1492099 NA non-coding downstream 8054 78434050 ~ 78434317 (+)
G1492106 NA non-coding downstream 14782 78440778 ~ 78440987 (+)
G1492125 NA non-coding downstream 54784 78480780 ~ 78483600 (+)
G1492219 NA non-coding downstream 198722 78624718 ~ 78630403 (+)
G1492239 NA non-coding downstream 227113 78653109 ~ 78653334 (+)
G1492003 NA other upstream 169679 78252629 ~ 78253308 (+)
G1491963 NA other upstream 232697 78189012 ~ 78190290 (+)
G1491899 NA other upstream 403171 78018368 ~ 78019816 (+)
G1491886 NA other upstream 414188 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1738967 76683599 ~ 76684020 (+)
G1492310 NA other downstream 344751 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 903623 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 956649 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2867444 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2911021 81337017 ~ 81338163 (+)

Expression


Co-expression Network