LOC110494627 (LOC106565937)


Basic Information

Item Value
gene id LOC110494627
gene name LOC106565937
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78542451 ~ 78553518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569859.2
CATGAACAAAACCTCCACTGCATCTATTTGAGCACCTTGATCAGAGAGAGATTCAATCAGGCATGGTAAAACAACACGTTTCGGCTTGTTTCTTTTGAAAAACGACATTTTTTACAACTAGCATCTCAGTAGTTTGAAATGGATTATCAACGCCGTATTACCTCATATCCTTTGAGAATACTTTGCTTTTTTAATCTGgtttgttctgtgttgttgtctagCTGTCCTCGTACCTGTGACTCAGGCTTCATCATTAACAAGTGTAAGTGTGTCCCTTGTCCCAATGGTTACTACTGGTACAAGCTTAATGGCCGTCCTAAGTGTGACTTCTGTACTAAAGCCTGCTCAGTTGATCGGCACTTGACACAGGTGAAGGAATGCCGCCGGGACTCAAACCGGGAGTGCCACTGTGTCAGGGGCTTTTTCTGTGCCAGCACTGCCCAGTATACCTGCAGGAGGTGTAAACCGTGCGTGTCTGGCACCTTCTCCAACACAGCAAACCTAGCCACGTCCTGCAAACCCCACACAGTTTGTGGCCATAAGGGAATGACCATGGTAACAGAGGGCACTGCCTCTCAGGATCGTGTGTGTGCCCAGACTTCCCCCACCTCTCCTACAACTACTGCACTTCCACCTGCTCAAAGCTCAAAGATGTCCCTTCGTTCTGCTATATCCAGTGGTGTCGGCACCAACAGAGAACTCCTCATCGCGAGATCCGCATCTCGACTGGTTTGGTCTCCTGAGAACGTTCTCATCAGGTCCTCTCTGTCCCAAGCCAGGAGAgacccctccatctccctcgcaACCAAGCTCACCACCAGGAGAAAGCCATGCAAGGTGGACAGTGACACCTCACCTGCAGAGTCTGCCTCTGCACCCCCTCTTACCACAAAAGACAATGACTCACCTCATCTCCCAGTCCCAGCCTCTGGACAGAGCCCTCCCAGTCTCCCTTTGCTGCTGCTGATAGTTGGGCTCTTAGGGGTCACTCTGCTGCTGATTGGTTACTTTGTGGGGTGTAGGGGGAGGTCACTGGAGTCCATGCACAAGTGGAAAGGTCCAATATTTCGGAAATATATTTGTAAGGAAAGTCTGAGAGGGAGCTATAAAGCGTGGGAGTGCCAGCCTTGTCCTGCTGCCCTACAGACGGCTTCCTATAAGCAGGCCAAGCTGCCACAGGAGAGAATCCCACACCTGGAGGCCCAGCATCTTCTGgggagggagactgggggagaTCCTAGACAGGAGGGTACAGGGTCACAACTTCCAGGGGGCATGCAGAATGTCTCAGTAGATCCCTCTGGAGGAGAAAACATTAGCAACATAGTAGGGTCCATATACATCTACTCTCCAGGGACGGTTGTCCTGGGATCCAACAAATCAGACAGGGAGGGGGATCaaggggagagtggaggagagggctgTCCCCTCACCAGCAAGCCCCAGCAGGAGTCCTCCTACCCACTCCCTTGGGGCTCCGCTCTGGGGCCAGAGGGAATGAGTACGCCGAAGGATACCTGCAAAGAGCTGAGCTACCCCGTGCCAGCCACCAGCAATTGAAAACTATGAAAAAAATGGTGAGggggtgtgagggggggggggcaggttcaGTCAATATCATACCATCTCTGGGAGAGGGAGACTGAATATTATTTGCTACTGTAAAGACAGACTGAATATTATTTGCTACTGTAAAGACAGACTGAATATTATTTGCTACTGTAAAGACAGACTGAATTGCAAAATACACTGGGGTCTATGGGCCTTCTATTATTAAAGAGTGACAACTTGTTTGAACTGCA

Function

NR:

description
uncharacterized protein LOC110494627

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569859.2 True 1802 mRNA 0.51 10 78542451 78553518

Neighbor

gene id symbol gene type direction distance location
LOC110494624 LOC106565712 coding upstream 116455 78422987 ~ 78425996 (+)
odad1 LOC106565714 coding upstream 129618 78396236 ~ 78412856 (+)
LOC110494621 LOC105017400 coding upstream 146722 78390905 ~ 78395729 (+)
si:ch73-303b9.1 LOC106565721 coding upstream 456456 78084722 ~ 78085995 (+)
LOC118940495 tcbp2 coding upstream 481641 78056325 ~ 78060810 (+)
LOC110494628 LOC106565709 coding downstream 1085 78554603 ~ 78576168 (+)
LOC110494629 LOC106565708 coding downstream 43622 78597140 ~ 78640882 (+)
LOC110494631 LOC106582819 coding downstream 100073 78653591 ~ 78669747 (+)
LOC110494632 LOC106565705 coding downstream 120859 78674377 ~ 78681299 (+)
LOC110494635 LOC106565704 coding downstream 165870 78719388 ~ 78728997 (+)
G1492125 NA non-coding upstream 58851 78480780 ~ 78483600 (+)
G1492106 NA non-coding upstream 101464 78440778 ~ 78440987 (+)
G1492099 NA non-coding upstream 108134 78434050 ~ 78434317 (+)
G1492083 NA non-coding upstream 155017 78386899 ~ 78387434 (+)
G1492219 NA non-coding downstream 71200 78624718 ~ 78630403 (+)
G1492239 NA non-coding downstream 99591 78653109 ~ 78653334 (+)
G1492193 NA non-coding downstream 119359 78672877 ~ 78673046 (+)
G1492194 NA non-coding downstream 119640 78673158 ~ 78673551 (+)
G1492249 NA non-coding downstream 129538 78683056 ~ 78683313 (+)
G1492003 NA other upstream 289143 78252629 ~ 78253308 (+)
G1491963 NA other upstream 352161 78189012 ~ 78190290 (+)
G1491899 NA other upstream 522635 78018368 ~ 78019816 (+)
G1491886 NA other upstream 533652 78008290 ~ 78008799 (+)
G1490016 NA other upstream 1858431 76683599 ~ 76684020 (+)
G1492310 NA other downstream 217229 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 776101 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 829127 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2739922 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2783499 81337017 ~ 81338163 (+)

Expression


Co-expression Network