LOC110494630 (LOC106565707)


Basic Information

Item Value
gene id LOC110494630
gene name LOC106565707
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78642915 ~ 78651843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569867.2
AAAACATCCCAcgggggaggggtgaggggaggtGTACAGGAAGGATGAGAGCTGTTTGGCTCACACCGACGTGCTGTGCTGCTGGAGGCTCTTGTGTGCACAGTCATGGATGGTGTGTTAGAGGGAgcagctgtggtgtgtgtgtgtaaactggcCTGCAGTCTTCTCTTCCTGCCCATGGTCACTGCTTCTCTCAGTGCAGTCAGCTTCTGCTGCAACTGCCTGCTGCTCTTCACAGACCTCGTAGTCACAACCTTCCTGGTTGTACTCTGGTTTACAGAGCCCTGGCTACCTCAATTTTCCATGTCCGCTGATGTCATCGCCCTGCGCTTCCTGCTCTTCCTCAGCTACATCTACTGGGCAGTGCTGCTGATGACCACACCTCTGGTTGCTGTGGAGACGGCCATGAGGTTGCAGTGGCCCCAAGTGTGTGGTGGCGGAGCAGTGGACGGAGACGTTGACAAACAGAGTAAAAATCCTGCACCTCACGGCGGTGTGACACTGGAGGTAGAGAACGGGCAGAGCTGGGACACAGACacccagagaggagggagagaggaccaGGACCAGGGAAGTTGTCTGTCCCACATCATTGGCTTCTTCTGCTGTCTGCTGGTGTGGGCTGTCTGTGGCATCTGTGGGGGTCAGGGCTGGAGACTGGAGGTGCTGTGGGTGGAGGTCTGCCTGGAGAGGACCAGCTCCCTCACTCTGTGTCTCCCTAGCCTCCCCAACACCGTCCTGCTTGCTCTGGGTGAGCCCAGCTGGGGCCTGGCCACTGTGACCTTGGCTCTCCTGCTGGTGCTGACGGTGGGCTGGGGCTTTCTCAGAAGACACCTGGCCCACACAGAGACggacccacacacacccacaaccacacagacacacaaggagGAACATGGTACTGACATTCAACTGCCCGTTCAAACACTTCCTGCACCACGCAAGGCTATGAAACCTGTGATGTCAGTGGCGTCAGCCCCACGGTTTGTTGACACAGAGACAACATGGTCCAGATGCTCCGTTCACAGCCCATGTTCTGGGAACAACATGCAGCTGTCACTGGGTCACCATGTCCTCTTATCCCTGGAGGTTTTGTCAGCAGACAGACTAGAGGGACACAAAGAGAAAAAAGGACTAGGAGACATACCTCTCACTGGTATTGTGGaggaacacacagacaggagCCAGCATGGGCTCGGGCGATTTCCCTGCCTGGGGGTGAATATAATGACAGGGTTAATGTGTCTGCTCACTGTCTGTGTGTTACCTCTAAACCTCAGTGTGAACATCCTATTAATCAGGCACACAGAGACAATGCTGCAGTGGAGTTTGAAGATCTTAATGTAGTTGATAATGTAAATTCAATCATTAAGGAGGTCTGAAAGGCTTGCTCACTTTATCTTCATCCACTAAGCATAATATATCATATTGTTTCTTCTCTATGGGATAGTTGGTAGCTATTTTCAAACAATTTTCTCCCAGCAGGAGGGTCTCGATGCCAgttgatgcccccccccccccccccccccccacagggaTGGCAACCTGCCATCATATCATCTGGCGAGACTATCCCCAAAACAATTTTAACACATTTTCATATTGCACTTGGTCTCTGTTGTTCATTCAGTTAGCCTGTCCTCGATTGAACTGGCTGCACCCAAAGAAGCTAAACAGAGGGGTCTCTCAGTCAACGTAACATTGACATAAAGTCAGTGTACTGGACAATAAACCTGGATGGTGATAGTGTTAGATAATGAGGTGTGGCTTGGGAAtggcaaaggggggtgcaactcaatattatatACATTGACTGAATATACACAGAGTATTCCAcacattatttcatagttttggattgactgaccttcatgtcttaaagtaatgatgaactgtggtttctctttgcttatttgagctgttcttgccataatgtggacttggtcttttaccaaatagggctat

Function

NR:

description
uncharacterized protein LOC110494630

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569867.2 True 1965 mRNA 0.51 3 78642915 78651843

Neighbor

gene id symbol gene type direction distance location
LOC110494625 LOC106565710 coding downstream 134817 78484389 ~ 78508098 (-)
LOC110494623 LOC106565711 coding downstream 210342 78427699 ~ 78432573 (-)
LOC110494620 LOC106565713 coding downstream 253066 78214999 ~ 78389849 (-)
ikbke LOC106565715 coding downstream 428529 78190099 ~ 78214386 (-)
LOC110494619 LOC106565716 coding downstream 456646 78135094 ~ 78186269 (-)
LOC110493264 NA coding upstream 89359 78741202 ~ 78836394 (-)
LOC110494643 LOC106565970 coding upstream 640603 79292446 ~ 79297728 (-)
LOC110494645 LOC106565972 coding upstream 663357 79315200 ~ 79321011 (-)
LOC110494647 glyctk coding upstream 671381 79323224 ~ 79329499 (-)
hemk1 hemk1 coding upstream 704051 79355894 ~ 79359054 (-)
G1492825 LOC106582822 non-coding downstream 2145 78638504 ~ 78640770 (-)
G1492747 NA non-coding downstream 130009 78512703 ~ 78512906 (-)
G1492733 NA non-coding downstream 144958 78477578 ~ 78497957 (-)
G1492714 NA non-coding downstream 154986 78442339 ~ 78487929 (-)
G1492734 NA non-coding downstream 159306 78480785 ~ 78483609 (-)
G1492795 NA non-coding upstream 16855 78668698 ~ 78671759 (-)
G1492796 NA non-coding upstream 20070 78671913 ~ 78672168 (-)
G1492797 NA non-coding upstream 21022 78672865 ~ 78673520 (-)
G1492849 NA non-coding upstream 30039 78681882 ~ 78682124 (-)
G1492851 NA non-coding upstream 31845 78683688 ~ 78683964 (-)
G1492729 NA other downstream 167409 78473018 ~ 78475506 (-)
LOC110493260 NA other downstream 554063 78086079 ~ 78088852 (-)
G1491128 NA other downstream 1160526 77481941 ~ 77482389 (-)
G1490147 NA other downstream 1944819 76696796 ~ 76698096 (-)
G1492897 NA other upstream 118897 78770740 ~ 78771954 (-)
G1492910 NA other upstream 126509 78778352 ~ 78781395 (-)
G1492901 NA other upstream 152017 78803860 ~ 78813955 (-)
G1492898 NA other upstream 155296 78771571 ~ 78815429 (-)
G1493395 LOC106582800 other upstream 696388 79348231 ~ 79349389 (-)

Expression


Co-expression Network