LOC110494635 (LOC106565704)


Basic Information

Item Value
gene id LOC110494635
gene name LOC106565704
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78719388 ~ 78728997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569874.2
ATCTCAGCTTTGGAGATAGTGTGGGAGTAGAGGAAGAGTAAAGGGGAGGACTGGCGTCTGTGAGAAAAGCAGGGgcggcagaggagagaggggtactgAGGGTTACAGAACCAGTCATAGTTCCCCAGGAACTGAAATTTAAGGACACCTGAGTGTGGCCTCAGTGGAAGCTCCCAGCCATCATGGTTTTTCTGCTCATGTCTGTGACTGTGCTTCATCTTTTCACTCTGGCCATGCTGTTCATCGCCACCATGGAGAAGttctgGTGGATTTGGTCCGATGCTGAAATCACAGACCTCTGGTCTAACTGCATTCACGACAACGCAACGGGAAACTGGCTGTGTGCTGCCTCTAACGAAAATGACTGGCTGCAGGCAGTCCAGTCCCTGACTGTCCTCTCAGTGATCTTTTCCTCTATCTCCTTCCTGGTCTTCCTGGGTCAGCTCTTCACCATGTCTAAAGGAGGGCTCTTCTATTTCACAGGCCTCTGTCAGGTTTTTGCAGGTTTCACATCATTTGCCGCCTGTCTGATCTTCACATTCCACCGTAAGAAGATCCTGGACGACACCAGAGACCTGAGCATTGGCCACTTTGGCTACTGTTTCATTCTGGCCTGGTCCTGTGTACCGCTCTTGCTCTTCAGTGGAGTCCTGTATGTTCACCTGCGCAAGAGGCAGTGAACTAAGACATACATGAGCAGCATTATTCAGTATTACTTGGTATTGTTAGTCTATTATCACTTGACTGTACACTCTTAAAAACAGGATTCCAAAAGGAATCTTCAGCTGtctccataggataaccctttttggttccagttagaaccctctgtggaatacgttctacatggaacccaaaatggttctacctggaaccaaaaatagttattcaaagggttctactatggggccagctgaagaacccttttaggttctagatagcactctTTTTCTAAAGTGTAATGAACAACAGAGACACAATGTACGATGTCTTTATTTTATCTGTGTTAAATGTATATATGTATTGTGTATCTGTGAAATACTTTAAATTGAGTCTTCATTTTATAGACTATTCTTTACTGTATGCAATATTGCTGCAGTTTGGGTTAATTCGGTCATTTCTGTGATAAAGTATTTGTTTGCATAAAATCTTCCTCGTGATCAGCAAGACATGCCTCAAGACATGGAATTAACTGGAGAGTGGCTGTCGTGCGTTCAATTCCCCTGTGAAATATTGTTTATCTTAATATGTGATACTCCACACCACATTCCCATTGTGGAGCTCCAGTATGCCACACTATAATAAGCCCAGTAGGCTGTGCCAGAAATATGTTCTTTACATTTCAGAGACACTCCTGTGAAGGGGCAGTCATAGTTGGCCACCACATTATATTAtcttactgtatactgtagatcatGTCAAATAGCATCAATCTCTAAATAAAAGTTACCCTCAGTAACAA
>TU1706071
agaggagagaggggtactgAGGGTTACAGAACCAGTCATAGTTCCCCAGGAACTGAAATTTAAGttctgGTGGATTTGGTCCGATGCTGAAATCACAGACCTCTGGTCTAACTGCATTCACGACAACGCAACGGGAAACTGGCTGTGTGCTGCCTCTAACGAAAATGACTGGCTGCAGGCAGTCCAGTCCCTGACTGTCCTCTCAGTGATCTTTTCCTCTATCTCCTTCCTGGTCTTCCTGGGTCAGCTCTTCACCATGTCTAAAGGAGGGCTCTTCTATTTCACAGGCCTCTGTCAGGTTTTTGCAGGTTTCACATCATTTGCCGCCTGTCTGATCTTCACATTCCACCGTAAGAAGATCCTGGACGACACCAGAGACCTGAGCATTGGCCACTTTGGCTACTGTTTCATTCTGGCCTGGTCCTGTGTACCGCTCTTGCTCTTCAGTGGAGTCCTGTATGTTCACCTGCGCAAGAGGCAGTGAACTAAGACATACATGAGCAGCATTATTCAGTATTACTTGGTATTGTTAGTCTATTATCACTTGACTGTACACTCTTAAAAACAGGATTCCAAAAGGAATCTTCAGCTGtctccataggataaccctttttggttccagttagaaccctctgtggaatacgttctacatggaacccaaaatggttctacctggaaccaaaaatagttattcaaagggttctactatggggccagctgaagaacccttttaggttctagatagcactctTTTTCTAAAGTGTAATGAACAACA
>TU1706072
agaggagagaggggtactgAGGGTTACAGAACCAGTCATAGTTCCCCAGGAACTGAAATTTAAGGACACCTGAGTGTGGCCTCAGTGGAAGCTCCCAGCCATCATGGTTTTTCTGCTCATGTCTGTGACTGTGCTTCATCTTTTCACTCTGGCCATGCTGTTCATCGCCACCATGGAGAAGACTGGCTGCAGGCAGTCCAGTCCCTGACTGTCCTCTCAGTGATCTTTTCCTCTATCTCCTTCCTGGTCTTCCTGGGTCAGCTCTTCACCATGTCTAAAGGAGGGCTCTTCTATTTCACAGGCCTCTGTCAGGTTTTTGCAGGTTTCACATCATTTGCCGCCTGTCTGATCTTCACATTCCACCGTAAGAAGATCCTGGACGACACCAGAGACCTGAGCATTGGCCACTTTGGCTACTGTTTCATTCTGGCCTGGTCCTGTGTACCGCTCTTGCTCTTCAGTGGAGTCCTGTATGTTCACCTGCGCAAGAGGCAGTGAACTAAGACATACATGAGCAGCATTATTCAGTATTACTTGGTATTGTTAGTCTATTATCACTTGACTGTACACTCTTAAAAACAGGATTCCAAAAGGAATCTTCAGCTGtctccataggataaccctttttggttccagttagaaccctctgtggaatacgttctacatggaacccaaaatggttctacctggaaccaaaaatagttattcaaagggttctactatggggccagctgaagaacccttttaggttctagatagcactctTTTTCTAAAGTGTAATGAACAACA

Function

NR:

description
epithelial membrane protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569874.2 False 1462 mRNA 0.44 5 78719388 78728997
TU1706071 False 775 lncRNA 0.46 4 78719467 78728506
TU1706072 True 789 lncRNA 0.46 4 78719467 78728506

Neighbor

gene id symbol gene type direction distance location
LOC110494632 LOC106565705 coding upstream 38089 78674377 ~ 78681299 (+)
LOC110494631 LOC106582819 coding upstream 49641 78653591 ~ 78669747 (+)
LOC110494629 LOC106565708 coding upstream 78506 78597140 ~ 78640882 (+)
LOC110494628 LOC106565709 coding upstream 143220 78554603 ~ 78576168 (+)
LOC110494627 LOC106565937 coding upstream 165870 78542451 ~ 78553518 (+)
LOC110494637 LOC106565962 coding downstream 18841 78747838 ~ 78914408 (+)
LOC110493265 LOC106565960 coding downstream 193677 78922674 ~ 78932811 (+)
LOC110494640 LOC102295370 coding downstream 224091 78953088 ~ 79199957 (+)
LOC110494641 LOC106565967 coding downstream 472404 79201401 ~ 79216532 (+)
LOC110494642 LOC106565969 coding downstream 492283 79221280 ~ 79273445 (+)
G1492251 NA non-coding upstream 35231 78683945 ~ 78684157 (+)
G1492250 NA non-coding upstream 35459 78683463 ~ 78683929 (+)
G1492249 NA non-coding upstream 36075 78683056 ~ 78683313 (+)
G1492194 NA non-coding upstream 45837 78673158 ~ 78673551 (+)
G1492193 NA non-coding upstream 46342 78672877 ~ 78673046 (+)
G1492295 NA non-coding downstream 16258 78745255 ~ 78745616 (+)
G1492308 NA non-coding downstream 17263 78746260 ~ 78746537 (+)
G1492300 NA non-coding downstream 49357 78778354 ~ 78780383 (+)
G1492314 NA non-coding downstream 50967 78779964 ~ 78810967 (+)
G1492315 NA non-coding downstream 51489 78780486 ~ 78781598 (+)
G1492003 NA other upstream 466080 78252629 ~ 78253308 (+)
G1491963 NA other upstream 529098 78189012 ~ 78190290 (+)
G1491899 NA other upstream 699572 78018368 ~ 78019816 (+)
G1491886 NA other upstream 710589 78008290 ~ 78008799 (+)
G1490016 NA other upstream 2035368 76683599 ~ 76684020 (+)
G1492310 NA other downstream 41750 78770747 ~ 78775727 (+)
LOC110493267 LOC106565976 other downstream 600622 79321093 ~ 79336076 (+)
tusc2 tusc2 other downstream 653648 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2564443 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2608020 81337017 ~ 81338163 (+)

Expression


Co-expression Network