LOC110493264


Basic Information

Item Value
gene id LOC110493264
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78741202 ~ 78836394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036719.1
ATGGCTATAAAGGCCGAGGGAAAGTTGTGCAATACATCTGGCTTGCCCGCCCGCCCCTCTGCCTTCTACCACGAGCTGGCCCGCCCTTCTGCCTTCTACCACGAGCTGGCTTGCCCGCCCGCCCACCCCTCTGCCTTCTACCACGAGCTGGCTTGCCCGCCCACCCGCCCGCCCCTCTGCCTTCTACCACGAGCTGGCttgcctgcccgcccgcccgcccctcTGCCTTCTACCACGAGCTGGCTTGCCCGCCCGCCTCCCGCCCGCCCCTCTGCCTTCTACCACGAGCTGGCTTGCCCGCCCGCCCGCCTCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCGCATTTCTGCCTTCTCCCTCAAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCAACTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCGCCTTTCTGCCTTCTCCCTCAAGCTGGCCCGCCCGCCCCTCTGCCTTCGCACACGAGCTGGCCCTGGCATTGCAGAACCCTGGACCCTCACTGTAGATGGGAAGCTGTCTGACGAGTTTTCCCTTCCATTCCATGTAGAGGAAGTCAAAAGGTAGATGACAGCTTTTGCTGAGCAGGATGGTGCTGATCACCTCAGGTCCCCCTGGAGTCTTGCACCATCCGCTTCCTGGATAACTTCAGCCGTGGCCAGCACGGAGCCTCTTCGGCAGAGTACTTACTAGAGTCCGGCTACGCTGTGATCTTCCTGCACAGACACCGCTCCTTATATCCCTTCACTCTGGGATTAATCTGCTGGACAATAGAGGGTTCTGGCTGTGGCCAAGTCATGGTCAACCAGCAGGCACTTCCCAACATTGGCAAAGTCCTGATGCGTTACCAGGCGGTAAAAGAGGCACGGCTTCTTCTGCCTGTGGAGTTCAGCACCCTGTCTGAGTACCTGCACCACCTCAAAGCTGCAGCACAGGCACTCAGGCCCATAGGGTCTACGGCCATGTTTTATTTGGCTGCAGCAGTGTCAGATTTTTACATTCCAGCATCAGAAATGCCAGAGCACAAAATCCAGTCCTCCAATGGACCACTTCAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGGACTGGGCTCCACAGGCATTTGCTTCAAGCTGGAGATGGACCCGTCCATCCTGCTGGACAGAGCTCGGCGGGCACTGGACAACAGGCTGTGGTGGCCAGCGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTTACACTCAGGCCAAGCTAGTACTTACGGATGAGGAAGCAAGCAGAGATGTGGAGATCGAGGACAGTATTGTCAGTAACCTGACCAGAGCTCACAGCCAAATCATAACCCAACAAGACTGAGACCCCAGAGGTGTTTTCATTAGTTGCAATGGAAACTTCACTCCAAACAGAAAACGTTATGCAACAAAAACAGGTTACAACTGGACAAATTCATGGACGTCCCTCCCTGTTTGATATGTTTGCTTCCTAGAGTAAGATCGCTTCTCACAGAATCTGACTAATGAATACACTCCAGTAAACTGTGCTGCTTACTGGGAGGGCTGGCTTTGGTGGTCCGATGAAACACAGTAACGTGTCGTACAAGTCCCTGGGGCAGGGCACTAGCTCTACTTTCTTCTGAAATCTTAATTCATGCTTGTCTAGTTTGGATCTTCATTTTATCTTGCAGGGCTTTCACCGTCCTAGATCAGACATTCATGTGCATGCATATGTAGGTTTCAGTACACACTCTGCCTTTAAAATCTAATATTTACATAATCACAGCAAAACAATCCTTGATCACCTTAACTTTAAGTATCATACTCATGTCACAAGGCAGATTACAACATATTGGTTGTGGAATGATAATGCCAACCAATGAATTGACTTAACCTCATAGCAGTTTGTCAGAGTAATATCACAGACAGAGTACATCAGTAAAGTAACAGACTCGGAACATTAAACTTTAACTGTATGTTGATATTTTATGTGCTGGACAAATCACAAATCTACTCCACAGAGGGAACAGTCTTCCTTGAAGGCATGACACCCCATACAGCTAGCTATCAGTGATTGTGTAATTTACTTGCAAATGTGTGGAAACGGTTTGGTTGGTTATTTGAGTTTGACACTAAGTCCAGCACGAATACCAGACAGCTCTCCACTATCTTGTCTCCTCACAACAGACTTCATGAACCTGGAATACATTCAAGATTTTAATGTAGGTTTTTTTCAAAAATACACTTGGAATTCAATTTGATCCATAATTGACACTAGTTAAATTATACAAGTTGTCAATTTTGCTATCAAATACAGTATATCATATCAGCATACacactacaaagcaggatcaaggaGTTAGCCAGATAAATTGCCTCTATTCTGAACTAATAAATAACCAAGCTTGAAATGGGCTATGGTCTAATTAACTCAACCTAAGTTTATTTTTCTAAATGATTCAGAAAATCAACAGTTGTTTCTGGTTGTTAATCAAAGtaagctggctaactcattggttctgctttgtagtatacccctcagagGTCCTGAAAGATGTGCCTGCAGGAGGTGTAAGTAATGCCTGCAAAACACTATCATACATAGGATTTGTATACATTTTATACACTGCAACTTCAAGTTTCAAATGTTGTCTACAAACTTGTCCCGTTATGCGGATCTTGGCTAGTCTGAAATTCTCTCTGTTTGACTCTGCGATTGCGGTCAGTCTTCTTCCTCTTTGGTGTAAACCCTTGGTTCTTGGCCATTAGCGGAAAGGATCGAGCAGCATGTACAAATTAGACAAAAGTTTTAAACCGGGAAGGGAATACTCTAACATATAAAGTACTAGAATAATCTGATGAAGGTCATGATTTGAAGTACTGGGTGAAAATGTTTTCTTAATATTGTGCTTTGTACAATGAGTATGGAAACAAATATTGTACATGAAGGCTAAGCTGTACAATAAATAATTACTGCTGTATACTTGTGTGTAACTAATTTCTACATGTTTAAAGGATAATACTCAAGAGGGTGAGAC
>TU1706732
CAGGAAGTCGACCACTACTTCTCAATCATCAGTGACTTTCTTTCGATGTCTTTAAAAaTTTGTCTCCCTGGCTTGACCAGGCATTGCAGAACCCTGGACCCTCACTGTAGATGGGAAGCTGTCTGACGAGTTTTCCCTTCCATTCCATGTAGAGGAAGTCAAAAGGTAGATGACAGCTTTTGCTGAGCAGGATGGTGCTGATCACCTCAGGTCCCCCTGGAGTCTTGCACCATCCGCTTCCTGGATAACTTCAGCCGTGGCCAGCACGGAGCCTCTTCGGCAGAGTACTTACTAGAGTCCGGCTACGCTGTGATCTTCCTGCACAGACACCGCTCCTTATATCCCTTCACTCTGGGATTAATCTGCTGGACAATAGAGGGTTCTGGCTGTGGCCAAGTCATGGTCAACCAGCAGGCACTTCCCAACATTGGCAAAGTCCTGATGCGTTACCAGGCGGTAAAAGAGGCACGGCTTCTTCTGCCTGTGGAGTTCAGCACCCTGTCTGAGTACCTGCACCACCTCAAAGCTGCAGCACAGGCACTCAGGCCCATAGGGTCTACGGCCATGTTTTATTTGGCTGCAGCAGTGTCAGATTTTTACATTCCAGCATCAGAAATGCCAGAGCACAAAATCCAGTCCTCCAATGGACCACTTCAGGTGAGTAAAGAAAGCCATCAAATACAAAAGCACATGCTCATTGATCCACTGTAAGCCAAGCCTCTTCTGTCCTATAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGGACTGGGCTCCACAGGCATTTGCTTCAAGCTGGAGATGGACCCGTCCATCCTGCTGGACAGAGCTCGGCGGGCACTGGACAACAGGCTGTGGTGGCCAGCGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTTACACTCAGGCCAAGCTAGTACTTACGGATGAGGAAGCAAGCAGAGATGTGGAGATCGAGGACAGTATTGTCAGTAACCTGACCAGAGCTCACAGCCAAATCATAACCCAACAAGACTGAGACCCCAGAGGTGTTTTCATTAGTTGCAATGGAAACTTCACTCCAAACAGAAAACGTTATGCAACAAAAACAGGTTACAACTGGACAAATTCATGGACGTCCCTCCCTGTTTGATATGTTTGCTTCCTAGAGTAAGATCGCTTCTCACAGAATCTGACTAATGAATACACTCCAGTAAACTGTGCTGCTTACTGGGAGGGCTGGCTTTGGTGGTCCGATGAAACACAGTAACGTGTCGTACAAGTCCCTGGGGCAGGGCACTAGCTCTACTTTCTTCTGAAATCTTAATTCATGCTTGTCTAGTTTGGATCTTCATTTTATCTTGCAGGGCTTTCACCGTCCTAGATCAGACATTCATGTGCATGCATATGTAGGTTTCAGTACACACTCTGCCTTTAAAATCTAATATTTACATAATCACAGCAAAACAATCCTTGATCACCTTAACTTTAAGTATCATACTCATGTCACAAGGCAGATTACAACATATTGGTTGTGGAATGATAATGCCAACCAATGAATTGACTTAACCTCATAGCAGTTTGTCAGAGTAATATCACAGACAGAGTACATCAGTAAAGTAACAGACTCGGAACATTAAACTTTAACTGTATGTTGATATTTTATGTGCTGGACAAATCACAAATCTACTCCACAGAGGGAACAGTCTTCCTTGAAGGCATGACACCCCATACAGCTAGCTATCAGTGATTGTGTAATTTACTTGCAAATGTGTGGAAACGGTTTGGTTGGTTATTTGAGTTTGACACTAAGTCCAGCACGAATACCAGACAGCTCTCCACTATCTTGTCTCCTCACAACAGACTTCATGAACCTGGAATACATTCAAGATTTTAATGTAGGTTTTTTTCAAAAATACACTTGGAATTCAATTTGATCCATAATTGACACTAGTTAAATTATACAAGTTGTCAATTTTGCTATCAAATACAGTATATCATATCAGCATACacactacaaagcaggatcaaggaGTTAGCCAGATAAATTGCCTCTATTCTGAACTAATAAATAACCAAGCTTGAAATGGGCTATGGTCTAATTAACTCAACCTAAGTTTATTTTTCTAAATGATTCAGAAAATCAACAGTTGTTTCTGGTTGTTAATCAAAGtaagctggctaactcattggttctgctttgtagtatacccctcagagGTCCTGAAAGATGTGCCTGCAGGAGGTGTAAGTAATGCCTGCAAAACACTATCATACATAGGATTTGTATACATTTTATACACTGCAACTTCAAGTTTCAAATGTTGTCTACAAACTTGTCCCGTTATGCGGATCTTGGCTAGTCTGAAATTCTCTCTGTTTGACTCTGCGATTGCGGTCAGTCTTCTTCCTCTTTGGTGTAAACCCTTGGTTCTTGGCCATTAGCGGAAAGGATCGAGCAGCATGTACAAATTAGACAAAAGTTTTAAACCGGGAAGGGAATACTCTAACATATAAAGTACTAGAATAATCTGATGAAGGTCATGATTTGAAGTACTGGGTGAAAATGTTTTCTTAATATTGTGCTTTGTACAATGAGTATGGAAACAAATATTGTACATGAAGGCTAAGCTGTACAATAAATAATTACTG

Function

NR:

description
phosphopantothenate--cysteine ligase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036719.1 False 3175 mRNA 0.49 5 78741202 78836394
TU1706732 True 2651 lncRNA 0.43 3 78741264 78744468

Neighbor

gene id symbol gene type direction distance location
LOC110494630 LOC106565707 coding downstream 89359 78642915 ~ 78651843 (-)
LOC110494625 LOC106565710 coding downstream 233104 78484389 ~ 78508098 (-)
LOC110494623 LOC106565711 coding downstream 308629 78427699 ~ 78432573 (-)
LOC110494620 LOC106565713 coding downstream 351353 78214999 ~ 78389849 (-)
ikbke LOC106565715 coding downstream 526816 78190099 ~ 78214386 (-)
LOC110494643 LOC106565970 coding upstream 456052 79292446 ~ 79297728 (-)
LOC110494645 LOC106565972 coding upstream 478806 79315200 ~ 79321011 (-)
LOC110494647 glyctk coding upstream 486830 79323224 ~ 79329499 (-)
hemk1 hemk1 coding upstream 519500 79355894 ~ 79359054 (-)
LOC110493269 LOC106566002 coding upstream 1008016 79844410 ~ 79845741 (-)
G1492851 NA non-coding downstream 57238 78683688 ~ 78683964 (-)
G1492849 NA non-coding downstream 59078 78681882 ~ 78682124 (-)
G1492797 NA non-coding downstream 67682 78672865 ~ 78673520 (-)
G1492796 NA non-coding downstream 69034 78671913 ~ 78672168 (-)
G1492795 NA non-coding downstream 69443 78668698 ~ 78671759 (-)
G1492992 NA non-coding upstream 86187 78922581 ~ 78922901 (-)
G1492994 NA non-coding upstream 88437 78924831 ~ 78925060 (-)
G1492999 NA non-coding upstream 99297 78935691 ~ 78935910 (-)
G1493000 NA non-coding upstream 100538 78936932 ~ 78937235 (-)
G1493006 NA non-coding upstream 110766 78947160 ~ 78947483 (-)
G1492729 NA other downstream 265696 78473018 ~ 78475506 (-)
LOC110493260 NA other downstream 652350 78086079 ~ 78088852 (-)
G1491128 NA other downstream 1258813 77481941 ~ 77482389 (-)
G1490147 NA other downstream 2043106 76696796 ~ 76698096 (-)
G1493395 LOC106582800 other upstream 511837 79348231 ~ 79349389 (-)
G1494054 NA other upstream 1235245 80071639 ~ 80087637 (-)
G1494870 NA other upstream 1761600 80597994 ~ 80598532 (-)
G1494924 NA other upstream 1856028 80692422 ~ 80694102 (-)
G1495003 NA other upstream 2058694 80895088 ~ 80895437 (-)
G1492898 NA non-coding upstream 27103 78771571 ~ 78815429 (-)
G1492908 NA non-coding upstream 30634 78775102 ~ 78775595 (-)
G1492909 NA non-coding upstream 32741 78777209 ~ 78778233 (-)
G1492911 NA non-coding upstream 34021 78778489 ~ 78791914 (-)
G1492912 NA non-coding upstream 38675 78783143 ~ 78786323 (-)
G1492897 NA other upstream 26272 78770740 ~ 78771954 (-)
G1492910 NA other upstream 33884 78778352 ~ 78781395 (-)
G1492901 NA other upstream 59392 78803860 ~ 78813955 (-)

Expression


Co-expression Network