LOC110494641 (LOC106565967)


Basic Information

Item Value
gene id LOC110494641
gene name LOC106565967
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79201401 ~ 79216532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569885.2
TAAAAAGTGAGACTACGTGCTCTATGACCAAGGAACAAAGAGTTAACGCTTTACAATAGGGGGGAAGTTGGACAAAGTTCCTGTCTAACATATTCCCTGAATTCTATAGAGACTACCATCGGGGGAAATACACACGTTAATACATATTTCAGATTGTGTAAATAGCAGGATTACATTCTGGATACTGGGGTAGCAATATCATAATTTTGAAGACACCTGCGATACATCAGGTATTCGATTGGGAGGGAATTCATTGGGCGTTTACCGCTGGAAAGAATAAGATTAGGTCTACGGGGTTCATCCCTTGAGCCTCCTCTCCCCAGTCTGCTGTATCTGATTGTGTGACACTTCTGGTGGGTCcacgtgggggggggggtgatgtgttCCAGTGGCGGTCCAGACAGCTCCGGCTATGGGGGCAGCCGGTCCGGCTCCTCATATGCTCTGTGTGCCTTGGGGGTGGGGCTCATAGCCCTGGGCATCGTCATGATCGTGTGGACTGTGGTGCCCGGGGATGCTCCCCAGACAACCAAGGCTCCGGGCAACTTCAGTGTTATTGTACCAGTGGACCATGctggggatggagagaaggacagGGAAACAGCGAAGACCTCATCAATAGCCTATGTGCTGGTGGGGGCGGGggtggccatgctgctgctgtCCATCTACCTGGGGGTGAGGAACAAGAGGAGGGGGAGCCAAAGAGGACAGGAGACACAGGTCCCCTTTGTGGACCATGTGGCTGGGGAGGCAAGAGAGATTGCAGGGGAGCCAGCACCAGCCTACGATGTGCCCAGCTATGAGGAGGCGGTCACCAGTGGCCAGTACCCCATACGCCAGAGCAACTTACGCCACAGCACCTCCCAGCTGCCTTCATACGAAGACCTCATCAGTGCTGTGGAAAACGAGGGGGAGGGACCAAGAGCAGTTACTTCAGAGGAGGTTCCTCCCACCACTCCGGCCCTGGATCCCCAGCCCACCCCCGCCACTGCAGCCAACCCCCCCACCCGCAGCAGCAGTCGGGCTAGACGGATACTACGGCCGCTCAGGGTACGCAGAATCAAGTCAGAGAAACTCCATCTGAAGGACTTCCGTTTTAAGGTCCGCAACCCTACTGATGTGAAGGTGACCATTGAACCCATCACGCCACCACCACAGTATGACGACAAGATGCCTGAGTTCTGACAGCGCCCTCGGGCTTGGGAGGACTACAAGCATTGTTTTTCAATGTTGAGTAAAACAACACTATTGCTGGATCAGATGGACTAATAATAATACCATATTTGGAAAGCAGAACCATTATACCAGATGCTTTGTGAATATAGGCCCTGAACTCACATaccatctcagagtaggagtgctgatctaggatctgtccatgcaatcttattcattatgaactGAAAGGCAAATCCGATCCTAGTTCAGATCTCccactctgagacactttgtggataCACGGGCCTTGAGTCCAGAGGCCTGGCTGGGAGTCTTCTTCCTTCACACTGAGACCAAGACACTGACATTGTTGCTTTGAATCAAGATGTTTCTCTGCTCTATCTTGACTTGTTTATTGAAATCTGCTTAATGGCATATTTATTCCAGGGCTTCTTTATGTGCACTATGCTATCTGTTTAGAACACTGTGGCTGTGTTTGGAAGATAATTCCCTATCTTGTTCTTATCTTGTGCACAAATACATCTTGACATCCAGAAAATGTCCTTAACCTTTTCAGATGGAATGCATAAAATTGTGTCATAACAGTGCCTTGGTAATTGTATTGTATCAGCAGATGTGCCTATTAGGAAACGATCCATGTCATCAGTTTGTCCCACACTGTGATTGCTCATGGACTACTGGAAACAAATGCCCTATGGAAATGGTAGTTTCATGTCTGTCTATACAAAGAATGGCACAACTTTTGAGAATGTGTTTTTATAGTACTACTATGTAGAGGACATGCTGAAGCCAAGGAATAATTAAATACCTTTATGTTGACTGGC
>XM_036948257.1
ACTACAAACACCTTCGCTCAAATGGCTGGCAGCGATACATTGTTTTGGGATTCGGGAGGGAGAATTGTAGTCAAATTGATACATTAAGTTGGTAGTAGTCTGATTTAATCATGATGTAATGCAGTTAATTGGTCTGTGAAATCGTGTAAAGGCCCCTTAGAAGCTAGCCCTTAATGAGTCTGTTAGATTACATTTTTCATAAAGTAAGGGTCATTGGAAAAGGCGTCTTCTGTAAGGGGGTGTTTTGTAAGGAAGCGCAACGTtcggtctgaacattaacacgcaTTGTTTAAGATTAGGTCTACGGGGTTCATCCCTTGAGCCTCCTCTCCCCAGTCTGCTGTATCTGATTGTGTGACACTTCTGGTGGGTCcacgtgggggggggggtgatgtgttCCAGTGGCGGTCCAGACAGCTCCGGCTATGGGGGCAGCCGGTCCGGCTCCTCATATGCTCTGTGTGCCTTGGGGGTGGGGCTCATAGCCCTGGGCATCGTCATGATCGTGTGGACTGTGGTGCCCGGGGATGCTCCCCAGACAACCAAGGCTCCGGGCAACTTCAGTGTTATTGTACCAGTGGACCATGctggggatggagagaaggacagGGAAACAGCGAAGACCTCATCAATAGCCTATGTGCTGGTGGGGGCGGGggtggccatgctgctgctgtCCATCTACCTGGGGGTGAGGAACAAGAGGAGGGGGAGCCAAAGAGGACAGGAGACACAGGTCCCCTTTGTGGACCATGTGGCTGGGGAGGCAAGAGAGATTGCAGGGGAGCCAGCACCAGCCTACGATGTGCCCAGCTATGAGGAGGCGGTCACCAGTGGCCAGTACCCCATACGCCAGAGCAACTTACGCCACAGCACCTCCCAGCTGCCTTCATACGAAGACCTCATCAGTGCTGTGGAAAACGAGGGGGAGGGACCAAGAGCAGTTACTTCAGAGGAGGTTCCTCCCACCACTCCGGCCCTGGATCCCCAGCCCACCCCCGCCACTGCAGCCAACCCCCCCACCCGCAGCAGCAGTCGGGCTAGACGGATACTACGGCCGCTCAGGGTACGCAGAATCAAGTCAGAGAAACTCCATCTGAAGGACTTCCGTTTTAAGGTCCGCAACCCTACTGATGTGAAGGTGACCATTGAACCCATCACGCCACCACCACAGTATGACGACAAGATGCCTGAGTTCTGACAGCGCCCTCGGGCTTGGGAGGACTACAAGCATTGTTTTTCAATGTTGAGTAAAACAACACTATTGCTGGATCAGATGGACTAATAATAATACCATATTTGGAAAGCAGAACCATTATACCAGATGCTTTGTGAATATAGGCCCTGAACTCACATaccatctcagagtaggagtgctgatctaggatctgtccatgcaatcttattcattatgaactGAAAGGCAAATCCGATCCTAGTTCAGATCTCccactctgagacactttgtggataCACGGGCCTTGAGTCCAGAGGCCTGGCTGGGAGTCTTCTTCCTTCACACTGAGACCAAGACACTGACATTGTTGCTTTGAATCAAGATGTTTCTCTGCTCTATCTTGACTTGTTTATTGAAATCTGCTTAATGGCATATTTATTCCAGGGCTTCTTTATGTGCACTATGCTATCTGTTTAGAACACTGTGGCTGTGTTTGGAAGATAATTCCCTATCTTGTTCTTATCTTGTGCACAAATACATCTTGACATCCAGAAAATGTCCTTAACCTTTTCAGATGGAATGCATAAAATTGTGTCATAACAGTGCCTTGGTAATTGTATTGTATCAGCAGATGTGCCTATTAGGAAACGATCCATGTCATCAGTTTGTCCCACACTGTGATTGCTCATGGACTACTGGAAACAAATGCCCTATGGAAATGGTAGTTTCATGTCTGTCTATACAAAGAATGGCACAACTTTTGAGAATGTGTTTTTATAGTACTACTATGTAGAGGACATGCTGAAGCCAAGGAATAATTAAATACCTTTATGTTGACTGGC

Function

NR:

description
transmembrane protein 51-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569885.2 False 2006 mRNA 0.49 3 79201401 79216532
XM_036948257.1 True 2019 mRNA 0.49 3 79201869 79216532

Neighbor

gene id symbol gene type direction distance location
LOC110494640 LOC102295370 coding upstream 1444 78953088 ~ 79199957 (+)
LOC110493265 LOC106565960 coding upstream 268590 78922674 ~ 78932811 (+)
LOC110494637 LOC106565962 coding upstream 286993 78747838 ~ 78914408 (+)
LOC110494635 LOC106565704 coding upstream 472404 78719388 ~ 78728997 (+)
LOC110494632 LOC106565705 coding upstream 520102 78674377 ~ 78681299 (+)
LOC110494642 LOC106565969 coding downstream 4748 79221280 ~ 79273445 (+)
LOC110493266 LOC106582806 coding downstream 60769 79277301 ~ 79288650 (+)
LOC110494644 LOC106565971 coding downstream 81988 79298520 ~ 79314874 (+)
LOC110493267 LOC106565976 coding downstream 104561 79321093 ~ 79336076 (+)
LOC118936427 LOC106582800 coding downstream 126533 79338634 ~ 79350582 (+)
G1492371 NA non-coding upstream 264772 78936347 ~ 78936629 (+)
G1492369 NA non-coding upstream 265925 78935135 ~ 78935476 (+)
G1492314 NA non-coding upstream 390434 78779964 ~ 78810967 (+)
G1493174 NA non-coding downstream 29423 79245955 ~ 79293250 (+)
G1493185 NA non-coding downstream 73764 79290296 ~ 79291967 (+)
G1492310 NA other upstream 425674 78770747 ~ 78775727 (+)
G1492003 NA other upstream 948093 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1011111 78189012 ~ 78190290 (+)
G1491899 NA other upstream 1181585 78018368 ~ 78019816 (+)
G1491886 NA other upstream 1192602 78008290 ~ 78008799 (+)
tusc2 tusc2 other downstream 166113 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2076908 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2120485 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 2215679 81432188 ~ 81602161 (+)

Expression


Co-expression Network