LOC110494642 (LOC106565969)


Basic Information

Item Value
gene id LOC110494642
gene name LOC106565969
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79221280 ~ 79273445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569886.2
agagagagcgagagagagagagggaggggaaagagagagagagagagagagagagggagagagagaacgccaGACTGCTCAGACTTGGCATGTTTGAGGATCACATCGTGCAGACTAGACATAGACATTGCAACCAGAGACTGCTTTGGAGAAGATAAACATTGTATCGTTTTGACGCTCTTATGTGAGTGGTCCGACGGATTTATCTTATCTGTGGACGGGAGAGTTAAGAGTATTTCAACTCAATAGTGTCTTATCCTCATTTTTTTAACAGATAACGACCTGGGCCGGTGGTGACATTCTCTAGTGACATGGAAATGCTCTTTTGGTGGATTTTGAAGACAACTGATTAAAATAGGTCGCGTACATTTGAACTCACTTCTCTAGTGGCAAAAACATGGAGGCTCCATCAAGCTTTCAGCCTCATCCCGGACTTCAGCAAACTCTGAAGCAGTTTCATTTGAGTTCCAGGAGCTCCCTTGGTGGACCTGCGGCGTTCTCCGCTCGGTGGCACCAGGAAATTCTCTTCAACAAAGATGGAAAAACAGCTGAACTGATGCTGGCCATGCCTCCCCTGACACCCCAGGTTTTATCGGGGCCGTTGTTCATTCCATCCGACCGCTCCATCGAAAGGTGCGAAACTGTCCTGGAGCGCGAGACAATTTCTTGTTTCGTGGTCGGCGGCGAGAAACGGCTGTGTCTGCCGCAGATTCTAAACAGTGTTCTGCGGGATTTCTCGCTTCAGCAGATCAACTCGGTGTGCGACGACCTGCATATCTACTGCTCCCGGTGCACTGCCGACCAGCTGGAGATCCTCAAAGTCGTGGGTATCCTGCCCTTCTCTGCCCCATCATGCGGACTGATCACCCAGACGGATGCTGAGCGCCTCTGCAATGCCCTCATTTACTGTGGTATCTACCCTCCTCACTGCAACAAAGAGTTGTCTGGCTCCCTAGAGTTGGAGAGGACGGAAAAAAGCTTCAAAGTATACCACGAATGTTTTGGTAGGTGTAAGGGGTTATTTGTCCCAGAACTGTATACCAGTCCCAATGCCGCCTGTATCCAATGCATGGACTGCAGACTCATGTACCCCACTCACAAGTTTGTGGTCCATAGTCACAAAAGACTAGAGAACCGGACAGTTCACTGGGGGTTCGACTCGGCTAACTGGCGGGTCTATGTTCTCCTGGACCCGGACTATACGGGGAAAGAAGAGAAGGCTGTCCTGGATCAGAACCTCAAAGAAATGAAGGGCAAATTTGACTTCGTGAACAAGTTCTCAAACAAATCATGCCGTTCTCACAGTCCAGTTCCAGCCAAAAAGTCCAAACTGGTGAAACTCCACTCTCCATCAACTGACAAAGAGAAGCAACCTGATTGGTTACAATCTCTATCAAAGTCAGCGAACAAGGATCTGAAACGGGTCCCGCTGAAACAGAGGTCGTCAGCCTTCCGGCCCTGGTCGTCCAGAAGTCCATCTGCTGGGGAGGAGAAGTCTACTGGTCACAATGAGAgATTCATCCACAAAAACATAGACACGTCTGTAGTGTCAAATGTGGCCCCAGCTTTGTTGacctaccagagagaggagcaggcccCTGTGGGCCACAGTCAGGCTCTAGCCAGGGGAGACCAGCACATCAGCTCCAGACCAGCACCACAGTATGGAGACtcccagcctggtcccagacctgtccACATCAACACCAACACTAATAACACAGCCAACGGTGTGGAGGACATGGAGACTGACAGGGAGATTGAGGTGGACGACTGTGATGACTACCCAACATTGGTCCCCTCCTTGGCATCCCCTCCCTCTGCCTGTTCCAGTGTGTACCAGACCCTGACCCCCCAGACCACCGTGAGGCCTCTGGAGGGCCCAGTCCGGCTGGTATTACCAGGGGAACCGTCATGCCCAGAGCTGGACACGCTGAGACAGACCCTGTATGGATGCCTGGACTCCAAGGAGGCCAGGGAGAAGTTCCTGCAAGAGATTATTCAAATGAGAGTGAAGCAGGAAGAGAAATTGGGGGTTGCTCTGCAGGCCAAACTTAGTCTTCAGCAGGAGCTGGAGTTTGTGAAGGTGTCCAAGAAGGGACGTCTTCGAGAGGCCATCGAGGCCAAGCACAATCTGAGGAAAGAGATAGATCACCTGCATATGGAGTGGGACAGGAAGATGAGGGAGGCTGACGAGTCCCGTGGCCATCTGaaaagagagctggagagagagatacagttaCGGGTCTGCGACAAAGGCTGTGAGGCTGAACGCCTGCGATCCAAGTACTCCACACAGATTAAAGAGCTGCAGGTACAGCTGCATCAGGCGGAGGCGGACCGAGAGCAGCTGAGAGAGGAGCTGCAGCAGGAGAGGGAGGCGCGGCAGAGCCTGGAGAGGGTGGTCAAGGACCTGCAGGCTCAGCTGGGAGGCCCACAGGACAACGCCATGAAACCcccaacacactaacacagagacacacagacagacataacaCCCCAATGGATCCTAAAGATGCATGCAGTGGACTGGAGTCAGAGACGTAAAGCAAGAGGATGGATACAGACTGAATTGCGCCTCTTGTTAAGGGAAAGAAATTCAGTCAATTAAAGATGTTTTTTGGAGCAAAGTCAAGATGTTTTCATAGTATGAAAAATACATCTTCTGATTACTGATATGGTTACTGATAGGAGAGAAATGGacattattataataatatatgaACTTCATAGGGTGAACTGGATAGAAGCATGAATACGCATGACATACAGCCTACAGATGATAAGAAATACACTACATAGAAGACACCTCACAAGTGACTTTAGAGCCCTCAGTCAGATTCCTGAAGCTTTTTAAGGATTTTATTTTGGTATAAGCTATTTAAAAATGTAGAAATTGAGCTACATAATGTTACTTGAATATAAAAGAGGAGTGATTGTTTTCATGAAATGACAGCTGCAGATGTAACTCTTGCATGTGCCACACAATCTCGGTACACTTTAAGGTATTACAAACcactgaaaacaatggacacCAGATGACCACTATTTACTTCATTCAACCGATCAGTTTGCTTCATTCTAATGTTTTCATTTTGATGTTGTACAGGAAATGTTGCCTGAGCAGCACTGCTATCCTACAGGCAACGCTCACATACATATTTACACATTCACATACAAACATATTGGCCTATGTATACCAGCTTCTCTACCGTGTGTATTTGTGCTCTTGTATTTAAAGCCTGAAGTATTTGGGATTGTGTGGTCTGGAATCAGTTCCAGCCACCGTTTGTTCTCATCTTAAATATTTTATGAAAGTGTTACTTTTTACAATCGTTATACAGCTTAATATGGGTTGTTTTTTAGTTGTTTTGAGATACAGTATATTGTGTATGAAACCAAACCATGTGACAAGTGTTTAACTGTGCTTGTCCATGGAATGGAGTTCCGCCCACACAAAACACCTTTGATAAAGCTTGATCTTTGGTGAATTTAGGTATTTCTGATTTTGTATCGAGTACTGTAAAATAATTTATATTCTGAAATCATTATAAGCAGCATACATTTTTAGTCACTGGTTTTAGGGCTCTTTGAAAAAGCAACATGTGCTGTTTATGAACAACAT

Function

NR:

description
ski oncolike

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569886.2 True 3625 mRNA 0.47 7 79221280 79273445

Neighbor

gene id symbol gene type direction distance location
LOC110494641 LOC106565967 coding upstream 4748 79201401 ~ 79216532 (+)
LOC110494640 LOC102295370 coding upstream 21323 78953088 ~ 79199957 (+)
LOC110493265 LOC106565960 coding upstream 288469 78922674 ~ 78932811 (+)
LOC110494637 LOC106565962 coding upstream 306872 78747838 ~ 78914408 (+)
LOC110494635 LOC106565704 coding upstream 492283 78719388 ~ 78728997 (+)
LOC110493266 LOC106582806 coding downstream 3856 79277301 ~ 79288650 (+)
LOC110494644 LOC106565971 coding downstream 25075 79298520 ~ 79314874 (+)
LOC110493267 LOC106565976 coding downstream 47648 79321093 ~ 79336076 (+)
LOC118936427 LOC106582800 coding downstream 69620 79338634 ~ 79350582 (+)
LOC110494652 LOC106565979 coding downstream 78327 79351772 ~ 79355509 (+)
G1492371 NA non-coding upstream 284651 78936347 ~ 78936629 (+)
G1492369 NA non-coding upstream 285804 78935135 ~ 78935476 (+)
G1492314 NA non-coding upstream 410313 78779964 ~ 78810967 (+)
G1493185 NA non-coding downstream 16851 79290296 ~ 79291967 (+)
G1493195 NA non-coding downstream 66253 79339698 ~ 79444677 (+)
G1492310 NA other upstream 445553 78770747 ~ 78775727 (+)
G1492003 NA other upstream 967972 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1030990 78189012 ~ 78190290 (+)
G1491899 NA other upstream 1201464 78018368 ~ 78019816 (+)
G1491886 NA other upstream 1212481 78008290 ~ 78008799 (+)
tusc2 tusc2 other downstream 109200 79382417 ~ 79387551 (+)
G1495346 NA other downstream 2019995 81293440 ~ 81293926 (+)
G1495362 NA other downstream 2063572 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 2158766 81432188 ~ 81602161 (+)

Expression


Co-expression Network