LOC110494643 (LOC106565970)


Basic Information

Item Value
gene id LOC110494643
gene name LOC106565970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79292446 ~ 79297728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569887.2
CAGCCTGTGATACAGGCTTGGATATGTTTGAATCTTCCAAACATATTATTAAGTGACACATTCACAGGGGACAAACTCTTTGTCTGTCCCCCACCCCCCTTTAAAATCTCATTCTCCACCCACAAAAAAAGTCCATTGGCTGTTTTAGCAACTATGTTGTGTTGGGATGAATATTTCTGATCATCATTTGCCCTAGTTCATCAGGATCAGTTTATAGTTGGAAGGTTCAACACAGCAGACTGAATTTACAGCTAACAATCCTGTCAGGATCAAAGGTGAAACCATGAGGGTGCTGGAGGGTGTTGTAGTGTGCACCGTGGTGCTTCTACTGTCCCTAGGGAGCTGTGCTGCAGTGCGACCAGACTTGACAATCACTACAATAAAGCAAGATCCATACACCATGTCCAAAGGCTCTCAGCTGGAAGGGTACTGCATGGACCTGCTGTCTGAACTGGCCAAGAAACTGAGCTTCAAATACAACGTGCACCTGGTGAAAGATGGGTCCTATGGCAGGCAGGATGAGAGTGGGGCCTGGAACGGGATGATCGGTGAGGTGGTGAGAGGGGAGGCAGACCTGGCGATTGCTCCTCTTACCCTTACTGCTGCCCGGGAGAAGGCTGTGGGGATGACCAAACCCTTCATGCAGACAGGCATCAGTATTCTCCTGAGGAAAGACATCTCAGAAGAGGCTGGCTTCTTTGACTTCCTTACCCCCTTCTCAGTAGATACCTGGGTGGGGATCCTCGCTGCGTACCTGGGGACTGCTGTCTGCTTCTGTGTAGTAGCCAGACTCAGCCCATGTGAGTGGAGTCAACCCCAGACTGAGAAAAACAGCTTCACTCTCAGCCACAGTCTGTGGTACACCGCTGGAGCCCTCACTTTACAGGGTACCGGTCCACACCCCAAAGCATTATCAGGACGCATTATCTGCTGCACCTGGTGGTTGTTTGGTCTGGTCCTCTTGGCCTGCTATTTCTCCAACCTCAGCACCTCTCAGGGCTCAGACTCCAATTCACTGATGGTGAAAGGGTTTGAGGACCTGGCCAACCAGCAAGGGATTGAGTATGGGACCCTGTCTGGCTCCTCTACACTTGCCTACTTTAAGAACTCTAATAACCCAACCTACCGCAAGATCTATGAGCACATGGAAAGAACCAAGAGTTTTGTGTCGTCAATGGATGAGGGTGTTCGCCGGGCAAAGGAGGGCAACTTTGCCTTCATTGGAGAGTCTGTGTCACTGGACTTGGCGGTGGCACGTCACTGTGAGCTGATCCGTGTCCATGAGGTCATCGGCATGAGAGGGTACAGCATTGCAGGCACCCTGGGTTCTCCCATGCTGAAGAACCTGAGCGTGGCCATCCTGCAGCTGAGTGAGGCAGGGGAGTTGTCCTACCTGCGCAGTAAGTGGTGGGCCAGCAGCTGCATGGCAGACCCAGCCAAGGCCTCCTCCCTGCAGCCCCACAGCCTGAAGGGCATGTTTCTGGTGCTGGCCCTTGGCCTGGGACTGGGGGTGCTGCTGGCTGTCCTGGAGCTCACCGCCAAGTCCCGGAACGGTGCTGGTGAGCAGAGGAAATCATGTTGCACAGTGTTGTCTGAAGAACTGAGTCAGCGTTTCAGGGGCACCACCACCAATGAGAAGAGAAGTGAGGAAACAGACAAAGAAAAAGCATGAGGAGACACGATAGTATACGATAATATATACAGCCTGACAAAGCAAATGTCTCCATGCAGGTCTTGACATGAGTCATGGCTTGTACACTTATTTTCAATACTATCTACCTACCACAGTGAGACAGAGTGTATCAGAAAGGCTTCCAGACTGTTATATGATATGTTTATTAACAGAGTGATACATAAACAGTGAAGTAAATTAACAATACTACTGAAGTACTATGTTTAAAAATAATTATATGATAGCAGAGCATTTTACTGAGAAAATCAACATGTATATTTACTGTTACAAAACATGTAATGTGTACTGATTTATACATATTTAAGGGGAGTGCAAAAATAGAAATTAAACATGAAGATCCAAGTCAAGTCATCTGTAAATTATGAAAAATGATCAGTTTCAAAGAGTTTACATTTCAGTACTTTTGTTCGGAACAAATACTGAGAACAGATTACTGCTATTAATTGTATGATGCAATacatttgtttcaaagtagattatTCATTTACATATTGTAGATACTAAGTAAACCTAACTGTTTTTGTACAATTGGCAGCACACATTATGCGCATTCCTTTTGAAACTATAAAACCGTTAGTTAAATGTTTTGGTTATTATAGAACTCAACAAAAAGCATTGTCATAGAATGATGTTGATGTAAAAGTTACGGCACACCTTTCAATAAAACCAGTCTAATAATGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569887.2 True 2375 mRNA 0.46 10 79292446 79297728

Neighbor

gene id symbol gene type direction distance location
LOC110493264 NA coding downstream 456052 78741202 ~ 78836394 (-)
LOC110494630 LOC106565707 coding downstream 640603 78642915 ~ 78651843 (-)
LOC110494625 LOC106565710 coding downstream 784348 78484389 ~ 78508098 (-)
LOC110494623 LOC106565711 coding downstream 859873 78427699 ~ 78432573 (-)
LOC110494620 LOC106565713 coding downstream 902597 78214999 ~ 78389849 (-)
LOC110494645 LOC106565972 coding upstream 17472 79315200 ~ 79321011 (-)
LOC110494647 glyctk coding upstream 25496 79323224 ~ 79329499 (-)
hemk1 hemk1 coding upstream 58166 79355894 ~ 79359054 (-)
LOC110493269 LOC106566002 coding upstream 546682 79844410 ~ 79845741 (-)
LOC110494659 LOC106565998 coding upstream 586765 79884493 ~ 79891542 (-)
G1493382 NA non-coding downstream 790 79290283 ~ 79291656 (-)
G1493332 NA non-coding downstream 75299 79215284 ~ 79217147 (-)
G1493152 NA non-coding downstream 91795 79200417 ~ 79200651 (-)
G1493151 NA non-coding downstream 92529 79197747 ~ 79199917 (-)
G1493115 NA non-coding downstream 156730 79132272 ~ 79135716 (-)
G1493367 NA non-coding upstream 16196 79313924 ~ 79314787 (-)
G1493415 rassf1 non-coding upstream 81394 79379122 ~ 79382147 (-)
G1493483 NA non-coding upstream 203696 79501424 ~ 79502027 (-)
G1493490 NA non-coding upstream 219553 79517281 ~ 79517527 (-)
G1493492 NA non-coding upstream 221645 79519373 ~ 79519585 (-)
G1492898 NA other downstream 477017 78771571 ~ 78815429 (-)
G1492901 NA other downstream 478491 78803860 ~ 78813955 (-)
G1492910 NA other downstream 511051 78778352 ~ 78781395 (-)
G1492897 NA other downstream 520492 78770740 ~ 78771954 (-)
G1492729 NA other downstream 816940 78473018 ~ 78475506 (-)
G1493395 LOC106582800 other upstream 50503 79348231 ~ 79349389 (-)
G1494054 NA other upstream 773911 80071639 ~ 80087637 (-)
G1494870 NA other upstream 1300266 80597994 ~ 80598532 (-)
G1494924 NA other upstream 1394694 80692422 ~ 80694102 (-)
G1495003 NA other upstream 1597360 80895088 ~ 80895437 (-)

Expression


Co-expression Network