LOC110494647 (glyctk)


Basic Information

Item Value
gene id LOC110494647
gene name glyctk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79323224 ~ 79329499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569901.2
AATCATTACACATAGGGTACACATTCAACTTGAGTTGAGCTCTGTCCAGATTTTGCCACACTGCCTTAGTGTGCCATACTGCCTTAGCAATACACAGCTCGCACACGGAGCACAAAGGAAATCCAGGTTCACCATACCCGGTGTACAGGTGCTCCCTGCAAGGACAGCCTGATGGCTTGTGTTGTGTCCCTGTATCGGCCTTTATCTTTACTGGCCCCTGTGGGGGTGAGGCGAGCCATAGTTTGCAGAATGTCACTGGACATGCGAGCACGGGAGGTGTTTGCTACAGCTATCGAAGCTGTGCAACCAGACATTGTGATGCAGCGGGGTCTGGAGCGTACAGGAGACACCCTCCTAGTGAATGGACGCAGCTTCACGCTAAAGAACAACCTTCACCTGGTAGGCTTTGGCAAAGCTGTGCTGGGCATGGCTGCCGAGGCAGAGAGGATAGTGGGGGACCACTTGGTGAGAGGAGTGATCAGTGTGCCACACGGCATTCAGGAGACAATACGGCAGCATGGGAAAGACCAGATGTTGTTGAAGGATGGAAGTCGCATCACAGTGATGGAGGGAGCTAAACACAACCTGCCAGATGCTGATGCCCAGAGGGCAGCCGAATGTATCAAGGAGCTGGTCAGCACACTAACAGAGAATGACATGTTGCTTGTACTCATTTCAGgaggaggGTCTGCACTCTTGCCTGCACCAGTCCCACCAATCTCTCTTCAAGACAAACAGGATGTTACACGTAGACTGGCTGGTGCTGGTGCCACCATTCAGGAGCTTAACTCTGTACGCCGTGCCCTGTCAATTTTGAAAGGAGGAGGACTTGCACACTGCGCTCACCCTGCTCAGGTGGTGGCCCTGGTTCTGTCTGACGTAATTGGAGATCCCCTGGACTTGATAGCCAGTGGTCCCACAGTGTGGACTGAGGTGTGGCCTGAGGAGATTTGGTCGATCCTTGAACGTTACgggctgtcctcctctctccctgtctcggtgAAAGAGGTGCTTGGACGCTCAGCTCCCCGATGGGAGGAGTCTGGAGAGCAGTCAGACAGGGCGGCACATGTTCTCAATGCTGTGATTGGCTCCAATAGCATTGCTCTGGAATGCGCAGGGAGACGTGCGCGGGAGCTCGGATTCCGTCCAGTTGTGCTGTCGCCAGGGGTGTGCGGGAACGTACAGTCTGTCTCTCGCCTTTATGGTCTACTGGCTCGCTTTGCCTGCTCCCGTGACGAGCCTCCTCCTGAGTTGCCTGCTGAGATTCTGAAGCTGGGGCCCGAGACAGGCGTGGAAAGCTGGGACTTGTGCCGTGCTATGCAGGTGCTTGGTGAGGGCCGGGTGGAGGGCTGGGGAGCCACCTGTCTGCTGGCTGGGGGAGAGCCCACTGTGCAGTTGACAGGCAAGGGGCGTGGTGGGCGGAACCAGGAGCTGGCCCTGAGAGTAGGGCTTGAGCTGGCAGGCATGGAGCTCCCTCCGAAGGGTCCCCTGTTTCTGAGTGGTGGGACCGATGGTCAGGACGGGCCAACTGAGGCAGCAGGGGCAGTCACAGACGCGGGGCTTGGCAAAGAAGCACGAGCACAGGGGCTCGACCCTGATGGCTTCCTCGTCAACAATGATTCCTTCACCTTCTTTTCACGCCTGTCTGGTGGGCAGCGGCTGCTCCTACCAGGGTTAACAGGTACCAATGTGATGGATGTGCACATGCTGCTCATCCCACCAATCCCCATAGTTGTGTCTGGTCGTTGATGAAGACAAGGGTATGAAAGCTGTCAATTACACATTTCAGTATGAATCCATACAGAGCAGACTGAGTATATTCAGAGAGCAGCTTTTCAAAGCTGACCATGCCCATGATATTCTTTCCAGCAAGCCCTTTTGGAGATCCATGTTTAATTTAAAAAGCAGCAATCAGTTATGTCTATGATAAGAATAAATACAGTAAATAGTGTACTTTTGTGTTATTTGTGAAGAGATTGTTTCTGTACAGAGCAGTTAGTCAGGCGGATAACCAAATATACCCAAGAATGTTCCAATTTATGATACAAGTATCAGACATAGTACACTAATACTAGATACCTTAAGGAACATTTTTGAAGATTGGATGCAGTCTAATAAAATGGCTGCCATTCTGATTTCCTATTAGATGAAAATAGGGTAAAGTCATTCCAAATCATATGTAAATTACTTTGTAATGTTATCTACCCACTAAATAAACCCCACaaataacatagacaataacatACTATTAAGACCTTCAAGGGGGTCATATTGAGGTCATTTTGACCCTAGTCCAATGACTACAGGAAAACATTTTGAACTTGTTGATAGAGCCAAGAAATTTCACAGCTGGGGCATGTCTATGTTATTCTTGGCTATAGTGCCATTAGATTTGGTCCATTACCCCCCTGGCTGCCATTTCCCATATGACCAATAACCAGCTGCATGGGGCCATATTGGACAGGATTCACTTGGACATGTCGCCATAAAATTAAAATGGTACTTACAGCCCAATGATGGTTTCAAATGTTTGAGAGGGTCTGGAAAACACAAAATGGCTCACAAACACCTTATATACTTATCCTTTAAACTTGTGGTGAAAACATGTCAAATGAATTTTTCCATGACTAGTTCCAATAGTTTTACATGTAAACACTCTAGAAAGTAATTTGAGTGTTCCCTGAAGTCTACTGATTGCAATGATTTGTTTTGTCAATTAAAAAAGACAGGAAACCTGCCCTGTACACATCACTTTAGGTAAAACTACATAGGAATGCATTATgtccagcagagagagacaggtaaccCATTAGGAGACCTTTCAGTTTTTACACGTAGTAAAAGTCTAAACAAAGATGTCTAGCTATAGTGCCATTGCAGATTTAACCTATTATACTCAGTGGTGAATTTTGTTcaccaaattcgacactcattgATCTCCATACAAAAATGCCTTGCTTGgccagagagaaaaaaatgaaaaacacctgctggagaagacagattttgggtCCAGTTATCCCTCTCACTTTGGATGTTCCTCTCTAATACTACAGAGATGACTTTAATCAACCAAGTTGATTTTCACCTGTTGACTCTTTCTCAATGCCACACACTTGTCACTAATTATCAGGACTGCCCTGATAGGATTTAAATAGAAACTCAAGGTGTGAATGAGCCTGTCAAGCAGTTACTCAAGTTTCTTTCCAGTtgtgttaaaagtacatttcctATTTCCTTGTATATTTTAGTTACGTAATACTTTTCCTTGTTTAATATAATCATCCTTATCACCTTTTTACATTATGCAACTTGCTTATGTCTCTCCTTTGTTTCAGAACCACACACAAATCCAACTTTACCATGTCCAACCACAAGTCCATAATAAATATGTGAACTTTGGCTCTGTCTCCTTGCTCTCTGACCAGAGCAGAGTAAATCtagatggttgtacagtcatcgcAAATAAAAactgaaggaccttggcgttactctggaccctgatattGCCTTCGATGAACGTGTCAAAAATATTTCAAGAGCAGCCTATTTTCATCTTCGTAACATTGAAAAAAATCAGAAACTTCTTGTCTAAATGAATTGAATTATACCCCTGGTGACATCTATCCAACTAATTCCCTATCTTGGATTTCTTAGCCTATTTTTCAGTGGCCATATTGGAAATGACGCCAGGGTGGTGTAATTGACCAAATCTGCGATGGCACTACAAAAATAGTTATTTAGACATGCCGTAGCAATGTGTGAAATTTGGTGGCTCTATCATTTTCTCACAAAGCTGCTGGACTATGGTCAAAGTGACCTCAATATGACCCCTATTAAGGTCTTAAGAGTACTTTATGATCAGATTTGTCTATATCTGGGGTAATATAGTGGGTAGATAAATGAGTTATTTTGATATTGTTTGGAATGATTTTACTCTATTTTCTTCTAACAGGTTTATTAACATTAACATGTTATTAAAAATAGCCACCATGGTTGACTGACAAGCTTCCCAGGCTGCAAAAAAATATTAAACTGTTCCTTAAAGTATCTAGTATTAGTGTACCAAGTTTGATACTTGTATCATAAAATGGAAGAATTATGTCACCTATCTGCTGGACTAAGTTGTGTGCTAGACATCGTTTTAGacaatgaaaaaaacaaaa
>XM_021569902.2
TTCATGTTTCGCACACAACCATAAGAGCACAGACTATAAACAAGGAAGACGCAATCATAACGCTTTTGGAGACAGACAAAAAGGGAGCAGAGAAATTCTCACATCTACAATAATTGTAACTACTTATCAGTCATACAATAATACGTGCTCTGACTGTCAAGACAGAGTAACCGAAGTAGCAATGCAGGTGCTCCCTGCAAGGACAGCCTGATGGCTTGTGTTGTGTCCCTGTATCGGCCTTTATCTTTACTGGCCCCTGTGGGGGTGAGGCGAGCCATAGTTTGCAGAATGTCACTGGACATGCGAGCACGGGAGGTGTTTGCTACAGCTATCGAAGCTGTGCAACCAGACATTGTGATGCAGCGGGGTCTGGAGCGTACAGGAGACACCCTCCTAGTGAATGGACGCAGCTTCACGCTAAAGAACAACCTTCACCTGGTAGGCTTTGGCAAAGCTGTGCTGGGCATGGCTGCCGAGGCAGAGAGGATAGTGGGGGACCACTTGGTGAGAGGAGTGATCAGTGTGCCACACGGCATTCAGGAGACAATACGGCAGCATGGGAAAGACCAGATGTTGTTGAAGGATGGAAGTCGCATCACAGTGATGGAGGGAGCTAAACACAACCTGCCAGATGCTGATGCCCAGAGGGCAGCCGAATGTATCAAGGAGCTGGTCAGCACACTAACAGAGAATGACATGTTGCTTGTACTCATTTCAGgaggaggGTCTGCACTCTTGCCTGCACCAGTCCCACCAATCTCTCTTCAAGACAAACAGGATGTTACACGTAGACTGGCTGGTGCTGGTGCCACCATTCAGGAGCTTAACTCTGTACGCCGTGCCCTGTCAATTTTGAAAGGAGGAGGACTTGCACACTGCGCTCACCCTGCTCAGGTGGTGGCCCTGGTTCTGTCTGACGTAATTGGAGATCCCCTGGACTTGATAGCCAGTGGTCCCACAGTGTGGACTGAGGTGTGGCCTGAGGAGATTTGGTCGATCCTTGAACGTTACgggctgtcctcctctctccctgtctcggtgAAAGAGGTGCTTGGACGCTCAGCTCCCCGATGGGAGGAGTCTGGAGAGCAGTCAGACAGGGCGGCACATGTTCTCAATGCTGTGATTGGCTCCAATAGCATTGCTCTGGAATGCGCAGGGAGACGTGCGCGGGAGCTCGGATTCCGTCCAGTTGTGCTGTCGCCAGGGGTGTGCGGGAACGTACAGTCTGTCTCTCGCCTTTATGGTCTACTGGCTCGCTTTGCCTGCTCCCGTGACGAGCCTCCTCCTGAGTTGCCTGCTGAGATTCTGAAGCTGGGGCCCGAGACAGGCGTGGAAAGCTGGGACTTGTGCCGTGCTATGCAGGTGCTTGGTGAGGGCCGGGTGGAGGGCTGGGGAGCCACCTGTCTGCTGGCTGGGGGAGAGCCCACTGTGCAGTTGACAGGCAAGGGGCGTGGTGGGCGGAACCAGGAGCTGGCCCTGAGAGTAGGGCTTGAGCTGGCAGGCATGGAGCTCCCTCCGAAGGGTCCCCTGTTTCTGAGTGGTGGGACCGATGGTCAGGACGGGCCAACTGAGGCAGCAGGGGCAGTCACAGACGCGGGGCTTGGCAAAGAAGCACGAGCACAGGGGCTCGACCCTGATGGCTTCCTCGTCAACAATGATTCCTTCACCTTCTTTTCACGCCTGTCTGGTGGGCAGCGGCTGCTCCTACCAGGGTTAACAGGTACCAATGTGATGGATGTGCACATGCTGCTCATCCCACCAATCCCCATAGTTGTGTCTGGTCGTTGATGAAGACAAGGGTATGAAAGCTGTCAATTACACATTTCAGTATGAATCCATACAGAGCAGACTGAGTATATTCAGAGAGCAGCTTTTCAAAGCTGACCATGCCCATGATATTCTTTCCAGCAAGCCCTTTTGGAGATCCATGTTTAATTTAAAAAGCAGCAATCAGTTATGTCTATGATAAGAATAAATACAGTAAATAGTGTACTTTTGTGTTATTTGTGAAGAGATTGTTTCTGTACAGAGCAGTTAGTCAGGCGGATAACCAAATATACCCAAGAATGTTCCAATTTATGATACAAGTATCAGACATAGTACACTAATACTAGATACCTTAAGGAACATTTTTGAAGATTGGATGCAGTCTAATAAAATGGCTGCCATTCTGATTTCCTATTAGATGAAAATAGGGTAAAGTCATTCCAAATCATATGTAAATTACTTTGTAATGTTATCTACCCACTAAATAAACCCCACaaataacatagacaataacatACTATTAAGACCTTCAAGGGGGTCATATTGAGGTCATTTTGACCCTAGTCCAATGACTACAGGAAAACATTTTGAACTTGTTGATAGAGCCAAGAAATTTCACAGCTGGGGCATGTCTATGTTATTCTTGGCTATAGTGCCATTAGATTTGGTCCATTACCCCCCTGGCTGCCATTTCCCATATGACCAATAACCAGCTGCATGGGGCCATATTGGACAGGATTCACTTGGACATGTCGCCATAAAATTAAAATGGTACTTACAGCCCAATGATGGTTTCAAATGTTTGAGAGGGTCTGGAAAACACAAAATGGCTCACAAACACCTTATATACTTATCCTTTAAACTTGTGGTGAAAACATGTCAAATGAATTTTTCCATGACTAGTTCCAATAGTTTTACATGTAAACACTCTAGAAAGTAATTTGAGTGTTCCCTGAAGTCTACTGATTGCAATGATTTGTTTTGTCAATTAAAAAAGACAGGAAACCTGCCCTGTACACATCACTTTAGGTAAAACTACATAGGAATGCATTATgtccagcagagagagacaggtaaccCATTAGGAGACCTTTCAGTTTTTACACGTAGTAAAAGTCTAAACAAAGATGTCTAGCTATAGTGCCATTGCAGATTTAACCTATTATACTCAGTGGTGAATTTTGTTcaccaaattcgacactcattgATCTCCATACAAAAATGCCTTGCTTGgccagagagaaaaaaatgaaaaacacctgctggagaagacagattttgggtCCAGTTATCCCTCTCACTTTGGATGTTCCTCTCTAATACTACAGAGATGACTTTAATCAACCAAGTTGATTTTCACCTGTTGACTCTTTCTCAATGCCACACACTTGTCACTAATTATCAGGACTGCCCTGATAGGATTTAAATAGAAACTCAAGGTGTGAATGAGCCTGTCAAGCAGTTACTCAAGTTTCTTTCCAGTtgtgttaaaagtacatttcctATTTCCTTGTATATTTTAGTTACGTAATACTTTTCCTTGTTTAATATAATCATCCTTATCACCTTTTTACATTATGCAACTTGCTTATGTCTCTCCTTTGTTTCAGAACCACACACAAATCCAACTTTACCATGTCCAACCACAAGTCCATAATAAATATGTGAACTTTGGCTCTGTCTCCTTGCTCTCTGACCAGAGCAGAGTAAATCtagatggttgtacagtcatcgcAAATAAAAactgaaggaccttggcgttactctggaccctgatattGCCTTCGATGAACGTGTCAAAAATATTTCAAGAGCAGCCTATTTTCATCTTCGTAACATTGAAAAAAATCAGAAACTTCTTGTCTAAATGAATTGAATTATACCCCTGGTGACATCTATCCAACTAATTCCCTATCTTGGATTTCTTAGCCTATTTTTCAGTGGCCATATTGGAAATGACGCCAGGGTGGTGTAATTGACCAAATCTGCGATGGCACTACAAAAATAGTTATTTAGACATGCCGTAGCAATGTGTGAAATTTGGTGGCTCTATCATTTTCTCACAAAGCTGCTGGACTATGGTCAAAGTGACCTCAATATGACCCCTATTAAGGTCTTAAGAGTACTTTATGATCAGATTTGTCTATATCTGGGGTAATATAGTGGGTAGATAAATGAGTTATTTTGATATTGTTTGGAATGATTTTACTCTATTTTCTTCTAACAGGTTTATTAACATTAACATGTTATTAAAAATAGCCACCATGGTTGACTGACAAGCTTCCCAGGCTGCAAAAAAATATTAAACTGTTCCTTAAAGTATCTAGTATTAGTGTACCAAGTTTGATACTTGTATCATAAAATGGAAGAATTATGTCACCTATCTGCTGGACTAAGTTGTGTGCTAGACATCGTTTTAGacaatgaaaaaaacaaaa

Function

symbol description
glyctk Predicted to enable glycerate kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in D-glyceric aciduria. Orthologous to human GLYCTK (glycerate kinase).

NR:

description
glycerate kinase isoform X1

GO: NA

KEGG:

id description
K11529 gck, gckA, GLYCTK; glycerate 2-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569901.2 False 4169 mRNA 0.45 5 79323224 79327983
XM_021569902.2 True 4208 mRNA 0.44 5 79323224 79329499

Neighbor

gene id symbol gene type direction distance location
LOC110494645 LOC106565972 coding downstream 2213 79315200 ~ 79321011 (-)
LOC110494643 LOC106565970 coding downstream 25496 79292446 ~ 79297728 (-)
LOC110493264 NA coding downstream 486830 78741202 ~ 78836394 (-)
LOC110494630 LOC106565707 coding downstream 671381 78642915 ~ 78651843 (-)
LOC110494625 LOC106565710 coding downstream 815126 78484389 ~ 78508098 (-)
hemk1 hemk1 coding upstream 26395 79355894 ~ 79359054 (-)
LOC110493269 LOC106566002 coding upstream 514911 79844410 ~ 79845741 (-)
LOC110494659 LOC106565998 coding upstream 554994 79884493 ~ 79891542 (-)
cenps apitd1 coding upstream 601001 79930500 ~ 79933811 (-)
LOC110494664 ret7 coding upstream 604367 79933866 ~ 79938222 (-)
G1493367 NA non-coding downstream 8437 79313924 ~ 79314787 (-)
G1493382 NA non-coding downstream 31568 79290283 ~ 79291656 (-)
G1493332 NA non-coding downstream 106077 79215284 ~ 79217147 (-)
G1493152 NA non-coding downstream 122573 79200417 ~ 79200651 (-)
G1493151 NA non-coding downstream 123307 79197747 ~ 79199917 (-)
G1493415 rassf1 non-coding upstream 49623 79379122 ~ 79382147 (-)
G1493483 NA non-coding upstream 171925 79501424 ~ 79502027 (-)
G1493490 NA non-coding upstream 187782 79517281 ~ 79517527 (-)
G1493492 NA non-coding upstream 189874 79519373 ~ 79519585 (-)
G1493493 NA non-coding upstream 190774 79520273 ~ 79520539 (-)
G1492898 NA other downstream 507795 78771571 ~ 78815429 (-)
G1492901 NA other downstream 509269 78803860 ~ 78813955 (-)
G1492910 NA other downstream 541829 78778352 ~ 78781395 (-)
G1492897 NA other downstream 551270 78770740 ~ 78771954 (-)
G1492729 NA other downstream 847718 78473018 ~ 78475506 (-)
G1493395 LOC106582800 other upstream 18732 79348231 ~ 79349389 (-)
G1494054 NA other upstream 742140 80071639 ~ 80087637 (-)
G1494870 NA other upstream 1268495 80597994 ~ 80598532 (-)
G1494924 NA other upstream 1362923 80692422 ~ 80694102 (-)
G1495003 NA other upstream 1565589 80895088 ~ 80895437 (-)

Expression


Co-expression Network