LOC118936427 (LOC106582800)


Basic Information

Item Value
gene id LOC118936427
gene name LOC106582800
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79338634 ~ 79350582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948434.1
ATGGGTCAAGACCATGACTATGACCACTTCCTACTTCCTCTGCTGGACGACAAGGAGCCCTGCTACATACTATACCGCCTCAACTCCCAGAACGCACAGGGATACGAATGGATATTCATCTCCTGGTCTCCTGACCAATCTCCAGTGAAAACAAAGACCAGTGTAGAGAGTAAGAGCCAAACACTGCAGGGCCTTGCTTACCCACTGCAGGAGGATGCCAAACGGGTTCTACAACAACTTGCACAGAAACACATCAACTACATTCAGCTGAAGTTGGACACAGAGAAAGAAATTATAGAGCTGGTTCATTTCGACCCGACAGAGGCCCATGAGCTGCCTTGTAGGGTTCCACGGATACGCCCTGACACCTCTTCTACCCTCTATAAACACTCCCATGAAGGGGATTACTTGGAATCTGTGGTGTTCATCTACTCCATGCCAGGTTACAGCTGTAGCATTAAAGAGCGGATGCTGTACTCCAGTTGTAAGGGTCGACTGCTGGATGAGGTGGAGAAAGATTACCATCTGGAGGTTGCCAAGAagaTGGAAATTGACAATGGGGATGAGTTGACAGAGGAGTTCCTGTATGATGAGGTTAATCCTAAGCAGCATGCCTTCCAGCAGGCCTTCGCCAAACCTTGTGGCCCAGCAGGGAAGAAAGGCAGTAAGCGCCTCATCAAGCGTCCAGCGGATGGGGAGGGCAGgctggagagttagagagagggaaagagcttTGTCATCACCCCAGCCCAAGCCATCCCCAGCCCTGCCCTCAATCCTCATCCTCCTGTTGCCATGCCATCTGGCAGCTTGTTTGGCCACGAGGAAGGAAAAGGAGAAGAACATGGACAGATTTCTCctgtcatttttatttttacctcCCTTTGCTTGTCATTACTGTACATGCTATTCATGAACATCAACAATAGGATAAAACTAAGGAAATCAAtttttttctcattctctctctgtgtcactcttAAAAACCTTACACatactgttacgttccccagtttctgtgttgttgtgggtttgtatgtgtatgtgtgtatttcaggaaataGAATCCTGGattcctcaagcagctgattggtcggccccatcTCTGATTGGAGCTCTGACCCCTCCCTCTAATCAGGGGAAACAGCTGGCTCTTCAATTACCAACTCCTTCTCCAGCTTGATAAAAGTCAGTGTTCCTTTGTCAGAAAAATAGCTTATTTTTATGTCCTGTGTTGATTTGTTGTGGCAGTCTGTAAAAGTTTTGTGGATATTATTTTGTAGGCGCTCCTTCCGAGGTATGTGTATGCCAATAGGACTTAgtgtttttggttattgaaattgTTCACTAAGTAGTAGTAActgttctgtttcatttgttccggGGCAGAAGGGGAACgcaccttgggagtgtttaggcaagaggcctgcgggcacACATAACCCGTAGTATTTCatctgtctatgcacactaggtaatACCCCTGGTATTTTGGTTAGCGAGCCAGTTGGTGCTaaaggttaggtaagtagtgggaaggtaggagaggggactctttaACTTACTttctttggttccgtccagccccttttcccccaCCTTACCGTGTTTTAAGGAATAATCAATTCCCTGTAACGGTATTTTTCCCCGCACCTACTATCGCACTTCTTTTTTTTCACTCCACAGGGAGTTGAGATGTAGCAGCGTGTTGTGTTCCCTCCAAGGGGcatacgacacacacacacacacacacagacggacagacagacggactgaCTGACAAACATGAAAGACCAATGGATGGTCTTACAGATGCCTCAGCCAAATTTCTCTATTGCAAATGTCACATAGATCTACAGAAGAAGCCTGTCCATCTGATGTGTTGTCCATAGGTTTAAACAATTCAGGTAACTTTACCCAAATTCCCTGTTTTTTTCCCCTGGAAATCCTGGTTAAAGGTTtcctggatttcctgcttattccctcgtgactccaggaatcttccaaccagtttttctggaaaaccagggcaGGACTTTTGCAACCCTAGTTATTACCTTGCGTGTTGTCACTAAATGTTTAGCATCAAACATGTTTGTAAAAACAGATGATAATGAgaggaattctaaataaaatgtagatgttt
>TU1707071
GAGGGGATTAGGTTGCCTCTCTGAACACACATGATCCTGCTGTAGTTACGCTAGCTGTGTCCTAGTCATACTGTCACACTCACTCAGACCAGTGCTTAGTCATACCGGCTTTATCAGTGCAGTTATTGCTTTAGGTTACCCCATTGTGTGTCTTTTTTTGGCTGGGCTAAATCTCCATCATCTGCTCTGGTACTTGGCTTGGCtctaccatctctgtctctcaacCCCCTTCCCCCCTACAGCACACGACGGGTGGGACATACTTTGTGCTGAACTGCCATGTTTCTGGTTCTCGTTGTGATGCCAGAACTAGGGGAGTCCTTGGCCAGGGCAAGGGGTGGAGCTATCCGCCTCATCCAGGACAAGTAGCTGGTGCTGGGGACATTCAGAGAGCCGGGACAGAGCTGAGACCATGACTATGACCACTTCCTACTTCCTCTGCTGGACGACAAGGAGCCCTGCTACATACTATACCGCCTCAACTCCCAGAACGCACAGGGATACGAATGGATATTCATCTCCTGGTCTCCTGACCAATCTCCAGTATGTGTAACTGTGCaaccaaggttattatagtacaTGAAAACTGACACTAAAAAAGGTACAACAATTGAAAAACAAtttagtaaactgaaataaaGAATTTAAACTAAAAACATAAAAAAACGAAGACTATACTGAAACTA

Function

NR:

description
PREDICTED: twinfilin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948434.1 False 2146 mRNA 0.45 6 79343065 79350582
TU1707071 True 686 lncRNA 0.47 2 79338634 79343426

Neighbor

gene id symbol gene type direction distance location
LOC110493267 LOC106565976 coding upstream 6989 79321093 ~ 79336076 (+)
LOC110494644 LOC106565971 coding upstream 28191 79298520 ~ 79314874 (+)
LOC110493266 LOC106582806 coding upstream 54415 79277301 ~ 79288650 (+)
LOC110494642 LOC106565969 coding upstream 69620 79221280 ~ 79273445 (+)
LOC110494641 LOC106565967 coding upstream 126533 79201401 ~ 79216532 (+)
LOC110494652 LOC106565979 coding downstream 1190 79351772 ~ 79355509 (+)
nprl2 tusc4 coding downstream 8696 79359278 ~ 79366137 (+)
LOC110494653 rassf1 coding downstream 20237 79370819 ~ 79382289 (+)
tusc2 tusc2 coding downstream 31835 79382417 ~ 79387551 (+)
LOC110494654 LOC106565981 coding downstream 38651 79389233 ~ 79393180 (+)
G1493174 NA non-coding upstream 49815 79245955 ~ 79293250 (+)
G1493185 NA non-coding upstream 51098 79290296 ~ 79291967 (+)
G1492371 NA non-coding upstream 406436 78936347 ~ 78936629 (+)
G1493309 NA non-coding downstream 154806 79505388 ~ 79505593 (+)
G1493318 NA non-coding downstream 166200 79516782 ~ 79517163 (+)
G1493488 NA non-coding downstream 166715 79517297 ~ 79517805 (+)
G1493498 NA non-coding downstream 172442 79523024 ~ 79523296 (+)
G1493511 NA non-coding downstream 193864 79544446 ~ 79544948 (+)
G1492310 NA other upstream 567338 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1089757 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1152775 78189012 ~ 78190290 (+)
G1491899 NA other upstream 1323249 78018368 ~ 78019816 (+)
G1495346 NA other downstream 1942858 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1986435 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 2081629 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 2478150 81828571 ~ 81847540 (+)

Expression


Co-expression Network