nprl2 (tusc4)


Basic Information

Item Value
gene id nprl2
gene name tusc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79359278 ~ 79366137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569905.2
GGTAAATTATGTTCGGGAActccaccatgtttcatcgaTAGCGCAAGGTTGTTGTTagccatatagctagctagcataccACTTGTTCGATTGTATTTACGCTGTGGTATATTTTTTGCATGACATTTAAACAGATCGGTCGTCAATTGTAAGGAAATACAAGAGGATCCAGTTGTATGTTTACACATTAGCCAGAGAGTTAAGTTAACTAGAGATAGCTGGACTAGCTAGCTAGGGTAGACTGTCAACAACAACCCTTCCCTGCTCTGTCAGGAATTAGGAGTCATcatagctactagctagctacagtaacaaGAGAGTGATTTACAACCACTAGATAGATACACAGCTACTGTAGGTCTTCAAAAAATACGTATCTTCAATTGAGCATTCACATTGTCTGAGAACGGAGTAAGAGATTGACGCAGTTGGAGTTGCTTTCTTTCTTTATTATACTACCTGAAGTTTAAAGTCCTTTTTACAACGTCTTCATGGGGATGAGTCGAATAGAGTGTATATTTTTTAGTGAGTTTCACCCCACACTGGGACCAAAGATTACTTACCAGGTTCCAGAGGAGTACATATCCCGGGAGCTCTTTGACACAGTACAGGTGTACATCATTACCAAACCAGAACTGCAGAACAAACTCATAACTGTAACGGCCATGGGGAAGAAGTTAATTGGTTGTCCGGTGTGCATCGAGCACAAGAAGTACAGCCGTAATGCTCTGCTCTTTAACCTGGGCCTTGTATGCGATGCAAGGACCAAGACCTGTGCCCTTGAGCCAATTGTCAAGAAGCTGTCAGGGTACCTCACAACGCTGGAGCTGGAGAGTGGGTTCATATCGAACGAGGAGAGCAAACAGAAACTGCTACCTATTATGTCCACCTTGTTAGAGGAGCTAAATGCTACCGGAGCCTGTACCTTACCCATCGATGAGTCCAATACAATCAACCTGAAGTTGATTGAGCAGCGCAGGGACCCTCTGATCGTGCAGGAGTACGACGTGCCTGTCTTCACTCAGTGCAAAGACCACTTCATCAAATCCCAGTGGGATCTCACCACTCAACAGATCCTGGCCTACATTGATGGGTTCAGGCATATCCAGAAGATATCTGCAGAAGCGGATGTTGAACTTAATCTAGTCCGGATCGCCGTACAGAATTTACTGTATTATGGTGTTGTAACCTTGGTATCAATATTTCAGTACTCCAATGTGTACTGCACAACCCCTACAGTCCAGAGCCTGATAGATGACAGGTCCATTCAGGAGGAGTGTCTCAACTATGTCACCAAGAAAGGACAGAAGAGAGCCTGTTTAAGGGATGTGTTCCAGCTGTACTGTGGTCTGACTCCAGGCACCACAGTTCGTGATCTTTGCTCCCGCTACTCACAGCAGCTGCAGAGGGTAGATGAGAGGAGGCTGATCCAGTATGGACTGATGAAGGCTCTCATTCGCCGTCTGCAGAAGTATCCTGTTAAGGTGACACGAGACGAGAGGAGCCGCCCACCACGCCTTTACACTGGTTGCCATAGTTACGACGAAATCTGCTGCAAGACGGGAATGAGCTACAAAGAGCTGGACGAGCGCTTGGAGAATGACCCCAACATAATTGTGTGCTGGAAGTGATACCCTGGCTTAATCAGCAACCACACTCACTTTGATAGAGAAAGCCATCTCTctaacaaagacagacagacacgaggTCCGATTGTACTGAAACAGAGGCCTCCTGCTCGTCTCTCATCTGACCCACACAACTGCCTGCTGTCCAGGAGACACAATGTGGATCAACCTCGGCCAAAGATGCCTTAGAAAAGTCAGTTTATCACTGTTGTTGTCTGTGGACTTCATCCGAAATGTTCTGGAAATTATCTGTGCATTCAAAGGCTGAGACATGTAGGAATTTATATACTACTAGTATGTCACCAATGTCACCTGTTATCATCCTCAGGTTTTTCCATACAGACTTTGAATCAATCATTGTGGGATAGTTTCATTCAGAACAATGAATGGAATAATTTAAAAAGACCACAAAAATGAGGaatgtggcaggtagcctagcggttaagagcgttgtgcCAGTTCAGAGAACATTCGCTAGTTCAAACTCTTGCGCCGACTAGgttaaaaatctgttgatgttcccttgagcaaggcacttaatcctaattgatCCTAtaagtcgctctgaataagaacatcagctaaatgactcaaatgtaaaatgtgcTTATTAATGTACCAAAAAATGATAATACCAACTCCTTGCAATAATAAAGATGCGTTGTTGATTTGAATGAAA

Function

NR:

description
Tumor suppressor candidate 4

GO: NA

KEGG:

id description
K20405 NPRL2; nitrogen permease regulator 2-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569905.2 True 2307 mRNA 0.44 11 79359278 79366137

Neighbor

gene id symbol gene type direction distance location
LOC110494652 LOC106565979 coding upstream 3769 79351772 ~ 79355509 (+)
LOC118936427 LOC106582800 coding upstream 8696 79338634 ~ 79350582 (+)
LOC110493267 LOC106565976 coding upstream 23202 79321093 ~ 79336076 (+)
LOC110494644 LOC106565971 coding upstream 44404 79298520 ~ 79314874 (+)
LOC110493266 LOC106582806 coding upstream 70628 79277301 ~ 79288650 (+)
LOC110494653 rassf1 coding downstream 4682 79370819 ~ 79382289 (+)
tusc2 tusc2 coding downstream 16280 79382417 ~ 79387551 (+)
LOC110494654 LOC106565981 coding downstream 23096 79389233 ~ 79393180 (+)
hyal1 LOC106565982 coding downstream 32503 79398640 ~ 79401885 (+)
LOC110493268 LOC106582605 coding downstream 181679 79547816 ~ 79844313 (+)
G1493174 NA non-coding upstream 66028 79245955 ~ 79293250 (+)
G1493309 NA non-coding downstream 139251 79505388 ~ 79505593 (+)
G1493318 NA non-coding downstream 150645 79516782 ~ 79517163 (+)
G1493488 NA non-coding downstream 151160 79517297 ~ 79517805 (+)
G1493498 NA non-coding downstream 156887 79523024 ~ 79523296 (+)
G1493511 NA non-coding downstream 178309 79544446 ~ 79544948 (+)
G1492310 NA other upstream 583551 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1105970 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1168988 78189012 ~ 78190290 (+)
G1491899 NA other upstream 1339462 78018368 ~ 78019816 (+)
G1495346 NA other downstream 1927303 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1970880 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 2066074 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 2462595 81828571 ~ 81847540 (+)

Expression


Co-expression Network