XLOC_003338 (arrdc2)


Basic Information

Item Value
gene id XLOC_003338
gene name arrdc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13524504 ~ 13533782 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006534
TGCTCCAACAAAAACGGGCGGGTCTCAAACAACAAACAGAGCCCATTACGCTCGGCGTGTGTTGTGTTTTACTCGAAGTTTGTAGATTTAAAAGTATAAAGTCCGTTCCTTTTAATTTTGATCATGCTGCATCGTCACCTATATAACATATAACGCTTTCAGCAAGTTAAAATTTACTTTTAAGTTTCAACGACGTTTATTTAATTGAGCAATATGATAATCTTCAGTTGCTGGATGATTTAGAGACTAATTTTCCCAAACAATAACATACATATCTCATCCTTTTTATAACTTAAACTCTATACTCTGGGGTCAAAGTTATGGCTTTCCAAAGCATCAAACACTTTGCTCTCGAGCTTGACGGTCCGGATGATATTGTGTACAGCAGCGGAGAGATGGTCACTGGCGTGGTGATTCTGGAGCTCACCCGGGAAATCAAGGTCCGGTCCCTGAGGGTGTTGGGAAGAGGAGTCGCTATAGCCCACTGGCTGGAAAACCGCAGTGTCGGCGTGAACACCGTCTATAACGACTACACATCCAAGACGATTTATTTCAGGAAGAGACAACATCTTATCCGAGATAATGGAGATCTGACTGTCATTCCTGCTGGGAGACACGAGTACCCTTTCAGTTTTCAGCTGCCAGAGGAAACTCTAGTGACTTCCTTTGAAGGCAAGCATGGCAGTATTCGATATTGGGTGAAGGTTAAGCTGCATCGCCCATGGGCCACAGTCAAGAAAATCAAGAAAGAATTTACCGTTATCGAACCCATTGACATCAACACTCCTAGTTTACTGGCACCTCAAGCTGGAACCAAAGATAAGATGGCTCGCATCTGGTACCGCAACTGTGGGCAGGTGTCAATCACTGCAAAGATTGACCGCAAAGGCTATACTCCAGGTGAAGTGATACCGGTGTTTGCGGAATTTGATAACTCCACATCTCGCTCCGTGGTGCCGAAAGCTTACATAACCCAGACGCAAACCTTCATTGCAAGGGGCACCATGAAGCAAAAACGAGCTGTGGTAGCCACGTTGTGTGGTGACATAGTTGGCCCGCGCCGCAGGGAGACCTGGCATGGCCGAGCTATCAAAATTCCACCTGTCGGCCCCTCCATCTTACAGTGTCGCATCATCAAAGTTGAATACATGCTCAGGgtgtGTGTTGATGTTCCTGGAACGTCCAAGCTTTCCTTAGAACTTCCTCTGGTGATGGGTACCATCCCTCTGCATCCATTCGGCAGTCGCACGTCTAGTGTCAGCAGCCAGTACAGTGTCAACATGGAGTGGCTTCGCATGGCCATTCCTGAACAGCCCGAGCCTCCTCCAGATTACAGCTCTGTTGTCACAGAAGAAGAAGCAGCTCAGAACTCCACAGCAGTCCAACCTGAAGAAGACCTCAGCGGTGTGCTGCAGCGCTCGCTCATAGCCTACATGCAGGAGTTCAGATCACTTCCACCTCCAGTGTACAGCGAGGTGGACCCAAACCCTCAGCCCATCATGATGCGTCGTCGCTGCATGACCTGTTGA
>TCONS_00006535
ACCCAGTTAAGATGTTTATGAGCAGGCAGCGATTCCTGCCATAGGCCTTACATAATAAAATCAGTAAGCCCGCCCACATGAGTTAAAGGCCGACCAGGGAACATGCACAGCTTCAGTTTTGTTTTGAACCTGAATGAAAAGCAGCTTCCTGCACTTGGACGCATCCACTCGCTCTTTGTTTGACTTTACGCGTCCGAAGACGATAAATATTTTAAGGGCTGCGCTTGGGGGAAGCCTTTGCAAGACCAAAGATGATTTTCGACAAGTTGAAAAAGTTCGACATCGTATTTGATTCTCCGGAGATGGACTGTCCTCCGGTGTACAGCAGCGGGGATGTTGTCTCAGGGAAAGTTGTGCTCGAGTTTTCAGCGGAGAGTAAAATCGATTCGCTGAAGTTGCATGCAGAAGGATTCGCGAAAGTTCATTGGACTGAGTCTCGCAGCGCAGGGTCCAGCACCGCGTACACGCAGAACTACAGCGATGAAGTGGAGTACCTGAACCGGAGAGAAGTGCTTCTGCAGGCAGATAATGGAGATCTGACTGTCATTCCTGCTGGGAGACACGAGTACCCTTTCAGTTTTCAGCTGCCAGAGGAAACTCTAGTGACTTCCTTTGAAGGCAAGCATGGCAGTATTCGATATTGGGTGAAGGTTAAGCTGCATCGCCCATGGGCCACAGTCAAGAAAATCAAGAAAGAATTTACCGTTATCGAACCCATTGACATCAACACTCCTAGTTTACTGGCACCTCAAGCTGGAACCAAAGATAAGATGGCTCGCATCTGGTACCGCAACTGTGGGCAGGTGTCAATCACTGCAAAGATTGACCGCAAAGGCTATACTCCAGGTGAAGTGATACCGGTGTTTGCGGAATTTGATAACTCCACATCTCGCTCCGTGGTGCCGAAAGCTTACATAACCCAGACGCAAACCTTCATTGCAAGGGGCACCATGAAGCAAAAACGAGCTGTGGTAGCCACGTTGTGTGGTGACATAGTTGGCCCGCGCCGCAGGGAGACCTGGCATGGCCGAGCTATCAAAATTCCACCTGTCGGCCCCTCCATCTTACAGTGTCGCATCATCAAAGTTGAATACATGCTCAGGgtgtGTGTTGATGTTCCTGGAACGTCCAAGCTTTCCTTAGAACTTCCTCTGGTGATGGGTACCATCCCTCTGCATCCATTCGGCAGTCGCACGTCTAGTGTCAGCAGCCAGTACAGTGTCAACATGGAGTGGCTTCGCATGGCCATTCCTGAACAGCCCGAGCCTCCTCCAGATTACAGCTCTGTTGTCACAGAAGAAGAAGCAGCTCAGAACTCCACAGCAGTCCAACCTGAAGAAGACCTCAGCGGTGTGCTGCAGCGCTCGCTCATAGCCTACATGCAGGAGTTCAGATCACTTCCACCTCCAGTGTACAGCGAGGTGGACCCAAACCCTCAGCCCATCATGATGCGTCGTCGCTGCATGACCTGTTGAACTGTTTGCCAGCTGAGCATCATGTGATGTTTGAAACAAACGAAGCCGAGATTTGATTCTCCTGGACGCCTCTCTGAGACTGGTACTTGTTTGAGCAGTTCGCATCTGTGCTTCCTGCAGCGGTGGCAGAGAAAGGAGGAGATGTCTGGACCAGGCAAGGCAGAGCGCTTTCGACAAACAAAGAGGACATTCAGGACCGGGATGAACAAAGGTTCAGCCCGTCATTGTCTCTCTGAGAGCGATCAGACTCTGGTCTGTGCCTAGACCGATTCATTGCCTATCGCACTTGTACGTCGAATCAGGGAATTTTGGGCATGATCACTAATCATGGGTGAGAAGCCATTCAGAGATTATACCCATCATGCCTGTGAATGAGAGATGAGTTCCTCTCAGCCAGCATTAGATGTTAGCAGGCATATGTGATGCCGTCCTTACTCCCATATATATCATGGCGTGTATCATCTCATTTGGTATTGATGTTAGCCAAAGAGATTGGTTTAATGTTCTTGTGCGCACGGGTAATTCTATGCAAAAGGGAAACCTAAAGCTTTAAGAATAGGATATGGGAGAAATTGCAAATGTAAATCCTGGAATTTCATGTTTTTTCTCCTGTCGGACAGGGATTAAAACAACTCTGTTAATGTAATGTTGGTTAATGTAATGTTGGCATAAGTTTAATCTGACAAAAGCAAAGTCTGTCATCTGGAAGGTCCTAATGTCAAGATGAATGGAATTTAAGACTGATTGTGTCAGAATATCAGcggatgtgtatatatatttttggcacATTGTTTTTCTGCATTTATTGTTTGCCAGTGGATCAAGGTAAAACAGTGCAGGGTTATATAAAAGCTTTTAACGGTTAGCTTTACAAATGATGGCAGAAAAAAACAGCCATGTGCATTCAAGGTGCCTTGTTGTTTTAGATGAAACAATGAACGAAAACAGGGATTGTCACATTAAGCTTTCCTAGTCCTATACGACTCCCTGAAGTGTCCTTACAAACATTCCAAAAATACCACAGAAGTGGTTCATTTCCAGATTTTGAAAGTGTGTAACTTCAGGTTTAAACACAATGATTGTTTATGGCACTCACtttgaatgaatgtattttataGATAACATTTGTGACaagtatattttttgttaatcacctttaagtaaataaaaagaaaaacaatatgtAA

Function

symbol description
arrdc2 Predicted to be involved in protein transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in basal plate midbrain region; blood vessel; nervous system; neural rod; and pronephric duct. Orthologous to human ARRDC2 (arrestin domain containing 2).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7146 Predicted to be involved in protein transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in basal plate midbrain region; blood vessel; nervous system; neural rod; and pronephric duct. Orthologous to human ARRDC2 (arrestin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000020761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006534 False 1529 mRNA 0.48 8 13524504 13532595
TCONS_00006535 True 2662 mRNA 0.46 8 13528437 13533782

Neighbor

gene id symbol gene type direction distance location
XLOC_003337 si:dkey-13m1.5 coding upstream 6658 13507053 ~ 13517846 (+)
XLOC_003336 homer3b coding upstream 18562 13423776 ~ 13505942 (+)
XLOC_003335 si:dkey-13m1.2 coding upstream 110533 13366773 ~ 13413971 (+)
XLOC_003334 abcb11b coding upstream 252419 13223625 ~ 13272085 (+)
XLOC_003333 atp5f1b coding upstream 311445 13207898 ~ 13213059 (+)
XLOC_003339 si:ch211-1a19.3 coding downstream 95746 13629528 ~ 13640471 (+)
XLOC_003340 wdr18 coding downstream 108375 13642157 ~ 13789451 (+)
XLOC_003341 CR555295.2 coding downstream 283787 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 coding downstream 331064 13864846 ~ 13864964 (+)
XLOC_003343 grin3bb coding downstream 470454 14004236 ~ 14064984 (+)
XLOC_003318 CR450764.6 misc upstream 812508 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 830241 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 838905 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 844476 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 900653 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 2589004 16122786 ~ 16123082 (+)
XLOC_003332 NA non-coding upstream 329907 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 372119 13151919 ~ 13152385 (+)
XLOC_003322 NA non-coding upstream 739445 12782215 ~ 12785059 (+)
XLOC_003319 NA non-coding upstream 806102 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 1001475 12522770 ~ 12523029 (+)
XLOC_003344 CT956066.1 non-coding downstream 547758 14081540 ~ 14082177 (+)
XLOC_003353 BX571942.1 non-coding downstream 897491 14431273 ~ 14640317 (+)
XLOC_003355 CU019562.3 non-coding downstream 1328504 14862286 ~ 14863542 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07542167_07549737 ARRDC2 coding CI01000051 null 7542167 ~ 7550660 (+)