LOC110494654 (LOC106565981)


Basic Information

Item Value
gene id LOC110494654
gene name LOC106565981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79389233 ~ 79393180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569914.2
CATGCTGAATGGAACATCCTGAAGTGGTCCAGTCTCCCGCTAGTCTAGGGTAGGCGTTTCGTGCAACTGAACGGACAACAGTACTAGGTTTACGGTACACTCACTGTCGTTTCAAGTTGTAAAGTACAGTAATAATACACGCCAGTGACATAAATGAAGTACCAGTGTTTTTACCTATTATTGCAGGGATCACTTAAAGTTTGTTTCATTCACTTTTCTCCAACTTATCTTGAGGAAAGACAAACGTGGCTTGGAATATAGCAGGACTCCATCTTTTGGGAATGCTTCCTCGTTTCTGTAAAGACAGGAGAGCAGAGTGAAAAGATATTCATTCCCCACAAAAGTCatgttgtactggactgtactgCCTGATTGGAAAGTATTGTTGTTGGTGACTCTTCTATGGGACTGCTGCTTCTGTGCTGAGGAACTGAAGCCCACAAGATGGCCACTGTATCCCCAAAAGCCTCTGGTCCTGGCCTGGAATGCCCCGACGGAGGACTGCGGCCCGCGGCACGGTATCCATTTTCAGCTGGAGCAGTTCCAGATTGTGGCGTCGCCCAACGAGGGCTTTGTCCGCCAGAACCTCACCATATTTTACAAGGACCGCTTAGGGTTGTACCCCTACTATGATGAGCCTGATGGTACAGCCATGAACGGTGGGCTCCCGCAGATTGCCAGTCTCACTCAGCATCTGGAGAAGATGCCGGAGGGCATTCAGAATTACATACGTGAACCAGGGGCCAAGGGACTGGCAGTTATTGACTGGGAGGAATGGAGACCACTGTGGATCCGCAACTGGGACTTCAAGGATGTGTACCGCAGACAGTCACGCCAGCTGGTGGCTGAGAAGAACCTAGCTTGGCCCGCAGAGCGTGTGGCTAAGGTGGCCCAGCAGGAGTTTGAGATGTCGGCCCGGAAGTTCATGCTGGAGACCCTGAGGCTGGCCAAGAGCCTGCGGCCCAACCAGCTGTGGGGGTTCTACCTATTCCCAGACTGCTATAACCACGACTACAGGATCACTCTGGAGAACTACACAGGCCGCTGCCCTGACGTGGAGGTGGCCCGGAATGAAATGCTCAAATGGCTGTGGACTGAGAGTACAGCCCTCTTCCCTTCCGTCTACATGAGCACAGTGCTACGTTCTTCGCCCTCTGGGCGCCAGTTTGTCCGGAACCGGGTGAAGGAGGGGATGCGTCTGGCATCAGGGGGAGACGGGCTGGCACGTCCTGTCTTTGTGTATGCCCGGCCCACCTACGCCAACGTATTGGACCTGCTGACAGAGACGGACCTGGTCTCCACCATCGGGGAGAGTGTGGCTCTTGGGGCCGCAGGCATCATCCTCTGGGGAGACCATGCTTATGCAGGCAGCAAGACCAGTTGCTTCAGTCTGAATGAGTACCTACAGGGTCCGCTGGGCAGGTACCTGCTCAATGTCTCCACGGCAGCAGAGCTGTGCAGCCAGAGGCTGTGCGGTTCCCAAGGACGCTGCCTGCGCAGACACCCTGACACTAACGCCTACCTGCACCTCAGCCCCCTCACCCACAACATAGTCAGCCTGGAAAATGGCAAATTCAAGGTTCAAACTCTAGGTCAGCTTGGGGAAGAGGAGATAATGGGCTTTCAGAGAGAGTTTCAGTGCCAGTGCTATAGTGGCTACCAGGGAGAGGGTTGTGGCCAGAGAGACCCCCTACAACAGAGAGGTATCGCACCTTCAGTCATGGGGACATGGGTTCACTGTCTGCTCCTGCTACTCCTCACACTCCTGCTCTGACTGATTGCATACATACATAGTTCATACAGCtacatttaaaatgatttaatGTGTATTGGTATACACATGACATTATCTACACACTTCCACAAAATGCACAAACATTATATACATACACTGGGACAAATGCAAATGTATTCACTGGGGCCCAGGATGCTGTAAAGTTGGTGAATCTATGATTAGATGGTGGAACACTGTGGAACACGTACGTAGAGTTAtggttgtttgtgtgttttgATTTTTTTGATACATTGGAGGGCTCGCTGGAAATAACTTTGTTTACattgctctctcgctctttctcagtcccaacaatatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569914.2 True 2175 mRNA 0.51 4 79389233 79393180

Neighbor

gene id symbol gene type direction distance location
tusc2 tusc2 coding upstream 1682 79382417 ~ 79387551 (+)
LOC110494653 rassf1 coding upstream 6944 79370819 ~ 79382289 (+)
nprl2 tusc4 coding upstream 23096 79359278 ~ 79366137 (+)
LOC110494652 LOC106565979 coding upstream 33724 79351772 ~ 79355509 (+)
LOC118936427 LOC106582800 coding upstream 38651 79338634 ~ 79350582 (+)
hyal1 LOC106565982 coding downstream 5460 79398640 ~ 79401885 (+)
LOC110493268 LOC106582605 coding downstream 154636 79547816 ~ 79844313 (+)
LOC110494656 LOC106566001 coding downstream 455302 79848482 ~ 79871163 (+)
LOC110494660 LOC106565999 coding downstream 481153 79874333 ~ 79882252 (+)
LOC110494661 LOC105025424 coding downstream 506838 79900018 ~ 79925378 (+)
LOC110493267 LOC106565976 non-coding upstream 66023 79321093 ~ 79336076 (+)
LOC110494644 LOC106565971 non-coding upstream 74395 79298520 ~ 79314874 (+)
G1493174 NA non-coding upstream 95983 79245955 ~ 79293250 (+)
G1493309 NA non-coding downstream 112208 79505388 ~ 79505593 (+)
G1493318 NA non-coding downstream 123602 79516782 ~ 79517163 (+)
G1493488 NA non-coding downstream 124117 79517297 ~ 79517805 (+)
G1493498 NA non-coding downstream 129844 79523024 ~ 79523296 (+)
G1493511 NA non-coding downstream 151266 79544446 ~ 79544948 (+)
G1492310 NA other upstream 613506 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1135925 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1198943 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1900260 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1943837 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 2039031 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 2435552 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2770026 82163138 ~ 82169750 (+)

Expression


Co-expression Network