LOC110494660 (LOC106565999)


Basic Information

Item Value
gene id LOC110494660
gene name LOC106565999
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79874333 ~ 79882252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950735.1
gacatttttgtaggggttgatacatttttcataatggaaaatcaagtctgaaatgtcaaagtggaaataacAAACTTCAGAAGACTTGTTAATACAGTACAAGTTTAAAATGTAATGCATTGCAGAAAAGTTCAAGTTGAAAATGTCCtgaattgcaggaaagttctcctgcaacagtttgatcaaattaagatcctacatctgtatgatgCCCATCACTCACAAATGGGTGGTCCAATGAGCAAGGGGCGTGTTCGACTGTTTCACCCCTCCTCTATGGTAGAGAAAGTATGCAATGTTCCTATATGATCCAGCTCCAACCCCCATCATACTTCAACTGGGGTATTCGTGACTACGAGGATACGACAGACAAACGTGTCCTACCCCCTGCCGTTCAAGTCTGCCACTCCCGAACCCTTTGCCCTGAGGCCTGAGCTCTGGGCATCCATGCCCACAGCCCCATCTTACTGCGCTGGTTGACAGACACAGGGATGAGCAACAGCGGGACCAAGGAGCCGTCACCACAGCCAGGCGTGGCCCAATCACCTAACTCTACACCTCCACGCAGGGGCCGGGGTCGCCCACGGAAACAACAGGAGGAGCCCACTGGCCCCCCAACTCCAAAGAGGCCGAGAGGACGACCCAGAGGAAGCAAGAACAAAGGCCCTCGTGCCACACCCAAGGAAGTAGAGCCTGTCGGGGAGAGAAGACCAAGGGGCCGGCCAAGGAAATGGAAGCCTCACAGGAGTCATCTGAAGTCGATAGAGacgatgtgccaacttctgtctgtagcgtccaaaccgtttgggctacaaactaatatgaccccactatggaaagaggagactcacAAACACGATgttgttctccgttttgctctacaacccccatAAGTGTCACGGGACTCTGATGGTAACCAGGTACCATTATCAAAAATTAATGAAAGTATGGAAGTAGTTTTGTGCCCTCCAAGAAAGGGGTTAACCGTGTgtccaaaattgaaatatatatttcctgagctttcttatatctcctagatataggacagacacttcaaaaccttattccttatgattttaTTTTTGTACTGTCTGTTTTGTCGTTTAGggggtggcagatagcctagtggttagagcgttgggccagtaaccgaaaggttgctagatcgaaccccgagctgacaaggtaaagatctgtcgttctgcccccgaacaaggcagttaacccactgttccccggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaaataaaaatgtgtttatatGGGCTGTGAGCAATTGGGCTgtgagcaacaacaacaaaaatgtatacctaaaggggtcctagaatagctaaatgatccatggtatgaccatcttgtAACAGTAGCCCTCCAACGGCTTATACTTTTATGATTTAAGGGCAGTAGTGCCCTCTGTTTTTCCTGATTCGTGTCAGTGATTGGCAAGAGAATTCCCTAACCTGGTGTCCTAGGTCTGAATCAGGGATGgtaactttgatgggggtgggggccacaaaaaaaaatctgaactaaTCATGAGGGCCGCAATGGCTCGCGGGTCTGCTTACCCTCAACCATACCAACACATGCAGTCAGAACCAGTCCTAGACTTTTGGTGGCCCTAAGTGAAATTCCCCTCGTGGGGAggatatgatatctgagtgagagtgactaacaaaatcaatggggaccCCCTGGTCGGTAAGTTTAGGCTGACTCACCAATCAATTTTTTTTGcagacatgggctaattgagtgactgtcagtggcTGACATAACAAgataaaaactgctgatgcacaaccacattttgaaattgcaccttgtgtattctgctATTCAAA
>XM_036950734.1
TCACACACAGACTGAGTGAgatagaggaaaggagggagggggagagagaaagaaagaaagatacatATTGTTAGTTCATTCCAAGATAAACTTTATTCAAGGAACTGTCTGTAAGATTAAGAAATCGTAAGAATAAAATATAGACTGAATAGTAAACTTTCCTACAATTCCATCGGTGTTTTTATTAGGTAGTCTAGTTTAACAATAAAACCAGCTGGTGGGAGCAAGGTGTCCTACCCCCTGCCGTTCAAGTCTGCCACTCCCGAACCCTTTGCCCTGAGGCCTGAGCTCTGGGCATCCATGCCCACAGCCCCATCTTACTGCGCTGGTTGACAGACACAGGGATGAGCAACAGCGGGACCAAGGAGCCGTCACCACAGCCAGGCGTGGCCCAATCACCTAACTCTACACCTCCACGCAGGGGCCGGGGTCGCCCACGGAAACAACAGGAGGAGCCCACTGGCCCCCCAACTCCAAAGAGGCCGAGAGGACGACCCAGAGGAAGCAAGAACAAAGGCCCTCGTGCCACACCCAAGGAAGTAGAGCCTGTCGGGGAGAGAAGACCAAGGGGCCGGCCAAGGAAATGGAAGCCTCACAGGAGTCATCTGAAGTCGATAGAGacgatgtgccaacttctgtctgtagcgtccaaaccgtttgggctacaaactaatatgaccccactatggaaagaggagactcacAAACACGATgttgttctccgttttgctctacaacccccatAAGTGTCACGGGACTCTGATGGTAACCAGGTACCATTATCAAAAATTAATGAAAGTATGGAAGTAGTTTTGTGCCCTCCAAGAAAGGGGTTAACCGTGTgtccaaaattgaaatatatatttcctgagctttcttatatctcctagatataggacagacacttcaaaaccttattccttatgattttaTTTTTGTACTGTCTGTTTTGTCGTTTAGggggtggcagatagcctagtggttagagcgttgggccagtaaccgaaaggttgctagatcgaaccccgagctgacaaggtaaagatctgtcgttctgcccccgaacaaggcagttaacccactgttccccggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaaataaaaatgtgtttatatGGGCTGTGAGCAATTGGGCTgtgagcaacaacaacaaaaatgtatacctaaaggggtcctagaatagctaaatgatccatggtatgaccatcttgtAACAGTAGCCCTCCAACGGCTTATACTTTTATGATTTAAGGGCAGTAGTGCCCTCTGTTTTTCCTGATTCGTGTCAGTGATTGGCAAGAGAATTCCCTAACCTGGTGTCCTAGGTCTGAATCAGGGATGgtaactttgatgggggtgggggccacaaaaaaaaatctgaactaaTCATGAGGGCCGCAATGGCTCGCGGGTCTGCTTACCCTCAACCATACCAACACATGCAGTCAGAACCAGTCCTAGACTTTTGGTGGCCCTAAGTGAAATTCCCCTCGTGGGGAggatatgatatctgagtgagagtgactaacaaaatcaatggggaccCCCTGGTCGGTAAGTTTAGGCTGACTCACCAATCAATTTTTTTTGcagacatgggctaattgagtgactgtcagtggcTGACATAACAAgataaaaactgctgatgcacaaccacattttgaaattgcaccttgtgtattctgctATTCAAA
>XM_036950736.1
TCACACACAGACTGAGTGAgatagaggaaaggagggagggggagagagaaagaaagaaagatacatATTGTTAGTTCATTCCAAGATAAACTTTATTCAAGGAACTGTCTGTAAGATTAAGAAATCGTAAGAATAAAATATAGACTGAATAGTAAACTTTCCTACAATTCCATCGGTGTTTTTATTAGGTAGTCTAGTTTAACAATAAAACCAGCTGGTGGGAGCAAGCCCAATGTTAGTCCTGCTCCATTGGACACCATACCACTGCTCTAACCTATATTTTATGTTGGTGTCCTACCCCCTGCCGTTCAAGTCTGCCACTCCCGAACCCTTTGCCCTGAGGCCTGAGCTCTGGGCATCCATGCCCACAGCCCCATCTTACTGCGCTGGTTGACAGACACAGGGATGAGCAACAGCGGGACCAAGGAGCCGTCACCACAGCCAGGCGTGGCCCAATCACCTAACTCTACACCTCCACGCAGGGGCCGGGGTCGCCCACGGAAACAACAGGAGGAGCCCACTGGCCCCCCAACTCCAAAGAGGCCGAGAGGACGACCCAGAGGAAGCAAGAACAAAGGCCCTCGTGCCACACCCAAGGAAGTAGAGCCTGTCGGGGAGAGAAGACCAAGGGGCCGGCCAAGGAAATGGAAGCCTCACAGGAGTCATCTGAAGTCGATAGAGacgatgtgccaacttctgtctgtagcgtccaaaccgtttgggctacaaactaatatgaccccactatggaaagaggagactcacAAACACGATgttgttctccgttttgctctacaacccccatAAGTGTCACGGGACTCTGATGGTAACCAGGTACCATTATCAAAAATTAATGAAAGTATGGAAGTAGTTTTGTGCCCTCCAAGAAAGGGGTTAACCGTGTgtccaaaattgaaatatatatttcctgagctttcttatatctcctagatataggacagacacttcaaaaccttattccttatgattttaTTTTTGTACTGTCTGTTTTGTCGTTTAGggggtggcagatagcctagtggttagagcgttgggccagtaaccgaaaggttgctagatcgaaccccgagctgacaaggtaaagatctgtcgttctgcccccgaacaaggcagttaacccactgttccccggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaaataaaaatgtgtttatatGGGCTGTGAGCAATTGGGCTgtgagcaacaacaacaaaaatgtatacctaaaggggtcctagaatagctaaatgatccatggtatgaccatcttgtAACAGTAGCCCTCCAACGGCTTATACTTTTATGATTTAAGGGCAGTAGTGCCCTCTGTTTTTCCTGATTCGTGTCAGTGATTGGCAAGAGAATTCCCTAACCTGGTGTCCTAGGTCTGAATCAGGGATGgtaactttgatgggggtgggggccacaaaaaaaaatctgaactaaTCATGAGGGCCGCAATGGCTCGCGGGTCTGCTTACCCTCAACCATACCAACACATGCAGTCAGAACCAGTCCTAGACTTTTGGTGGCCCTAAGTGAAATTCCCCTCGTGGGGAggatatgatatctgagtgagagtgactaacaaaatcaatggggaccCCCTGGTCGGTAAGTTTAGGCTGACTCACCAATCAATTTTTTTTGcagacatgggctaattgagtgactgtcagtggcTGACATAACAAgataaaaactgctgatgcacaaccacattttgaaattgcaccttgtgtattctgctATTCAAA
>XM_021569924.2
TCACACACAGACTGAGTGAgatagaggaaaggagggagggggagagagaaagaaagaaagatacatATTGTTAGTTCATTCCAAGATAAACTTTATTCAAGGAACTGTCTGTAAGATTAAGAAATCGTAAGAATAAAATATAGACTGAATAGTAAACTTTCCTACAATTCCATCGGTGTTTTTATTAGGTAGTCTAGTTTAACAATAAAACCAGCTGGTGGGAGCAAGGTGTCCTACCCCCTGCCGTTCAAGTCTGCCACTCCCGAACCCTTTGCCCTGAGGCCTGAGCTCTGGGCATCCATGCCCACAGCCCCATCTTACTGCGCTGGTTGACAGACACAGGGATGAGCAACAGCGGGACCAAGGAGCCGTCACCACAGCCAGGCGTGGCCCAATCACCTAACTCTACACCTCCACGCAGGGGCCGGGGTCGCCCACGGAAACAACAGGAGGAGCCCACTGGCCCCCCAACTCCAAAGAGGCCGAGAGGACGACCCAGAGGAAGCAAGAACAAAGGCCCTCGTGCCACACCCAAGGAAGTAGAGCCTGTCGGGGAGAGAAGACCAAGGGGCCGGCCAAGGAAATGGCCTCAGAAAGTAGTTCCAGAAGTTGTCCAGGAACAGCAGGGTCCTTCAGAAGAAACCGAGGAGGGCCCCTCACAGTCACAGTCTTTACCCACTGAGGCTTCACCATCTCACTCTCCAGCCCAGGAAGAAGCAGAGGGGGAATAGACAATGTGCCACAGTACTACCTCAAGGTTTGGGCAGAGACGAAGAGGTgtatactcttagaaaaaaagggttccaaaagggttctttgtctgtccccataggagaacccttttggttcaaggtagaacactttttggttcaaggtagaacaTTTTtaagttccatgtagaaccttttgtGGGTTCTACATGCAAACAATAAGagttctatggggacagccaaataacccttttaggttctagatagcacctttttttctaagagtgtataatcCAACCTCCACTGTCATGAGGATCTAAAACAACAGATAATAGCCCTGCTTTGTAGAACAGTAGGCCTGGTTGGGATATTGTGCCTGGAGTCTATCCAGCCCTGAGGCTGGGTCAATGATGGACATAGCTTTGGTCAGTTGATTGATTACTAAGGATTTGGGCAATGCGAGCAACAATTCAGTTTGACTGCCCAAACCCTTTCTCATGAACGAGATTGGTtgatgctgtgtgtttgtgtgtgcgtgcgtgcatgtgtgtgagcacgtacgtgtgtgcgtgtatgtggtggtggtgatgatgatgatggtggggaAGGGTTTTCAAAAGAAAAGGATGCATTTCAAACAGCGACTACTGGGACAAGAGGCGTGGCCCAATTTACGTTATGTCTGTCCTGATTGTGATGAAACACAGGGATATTTTGTTAGATATATATTTGAATGGGAATAAATTTTACATTACCATTAACATGAGCAGAAATAAGTCTAAACTCTACAGTGTCCAATTGACATGACATCGGACAATTAACATGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAGCATGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAGCATGAGGAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAGCATGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAACATGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAACATGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAACCTGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAACATGAGCAGAAATAAGTCTAAACTCTACAGTGTCCAATTGACATGACATCGGACCATTAACCTGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAGCATGAGCAGAAATAAGTCTAAACTCAACAGTGTCCAATTGACATGACATCGGACCATTAACCTGAGCAGAAATAAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC104960655 isoform X28

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950735.1 False 1895 mRNA 0.46 5 79874333 79879794
XM_036950734.1 False 1748 mRNA 0.46 5 79874714 79879794
XM_036950736.1 False 1809 mRNA 0.46 6 79874714 79879794
XM_021569924.2 True 2147 mRNA 0.45 6 79874714 79882252

Neighbor

gene id symbol gene type direction distance location
LOC110494656 LOC106566001 coding upstream 3170 79848482 ~ 79871163 (+)
LOC110493268 LOC106582605 coding upstream 30020 79547816 ~ 79844313 (+)
hyal1 LOC106565982 coding upstream 472448 79398640 ~ 79401885 (+)
LOC110494654 LOC106565981 coding upstream 481153 79389233 ~ 79393180 (+)
tusc2 tusc2 coding upstream 486782 79382417 ~ 79387551 (+)
LOC110494661 LOC105025424 coding downstream 17766 79900018 ~ 79925378 (+)
LOC110494662 LOC106565996 coding downstream 44108 79926360 ~ 79930803 (+)
LOC110493270 LOC106565994 coding downstream 77609 79959861 ~ 79980095 (+)
LOC110495196 LOC106565991 coding downstream 132857 80015109 ~ 80017775 (+)
LOC110494679 LOC106565990 coding downstream 142838 80025090 ~ 80041751 (+)
G1493698 NA non-coding upstream 26608 79847235 ~ 79847725 (+)
G1493681 NA non-coding upstream 73062 79799970 ~ 79801271 (+)
G1493511 NA non-coding upstream 329385 79544446 ~ 79544948 (+)
G1493498 NA non-coding upstream 351037 79523024 ~ 79523296 (+)
G1493488 NA non-coding upstream 356528 79517297 ~ 79517805 (+)
G1493517 LOC106565995 non-coding downstream 60839 79943091 ~ 79950459 (+)
G1493733 NA non-coding downstream 90760 79973012 ~ 79973225 (+)
G1493734 NA non-coding downstream 91880 79974132 ~ 79974513 (+)
G1493740 LOC106565993 non-coding downstream 114387 79996639 ~ 79997179 (+)
LOC110493267 LOC106565976 other upstream 538261 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1098606 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1621025 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1684043 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1411188 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1454765 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1549959 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1946480 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2280954 82163138 ~ 82169750 (+)

Expression


Co-expression Network