LOC110494659 (LOC106565998)


Basic Information

Item Value
gene id LOC110494659
gene name LOC106565998
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79884493 ~ 79891542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950730.1
atgggggagggagctTTTGATCACAGAGCTCTGTTTGCAGCATCCCTGGAGCAGCTACTGTTATCTAAAACATAAGGGCCAGGATAGGGGAACAGATCTAAAGAAGAGATAGACGGGGAATCCTCTGGAATCATCCAGGGGTCTGGTTGCTTTGTGTGGAGTGGAGCAGGAGGTGAGAAGAAGTGTTTTCCATGTAAACACCCCCTCAGAAGGGATAAGCGGAGgagcggtagagagaggaggaagggtagagataggaggggtagagagaggggaaacgTTCCTTCTCCCTAGGATATTACCCCTCTATCTGGCTACCTACTATggctcctttaaaaaaaatagtggTAATCCCATCACATCAAGGAAAGgtttcaagcagaccaccatagtccctgtgcccaagaacgcaaagGTTCTGCCTGGAGAGTGTGTTCTGGTGTACTCAATGCATTCCCAATGCTTCAGCAGACCTCAGTCCAGAGAGAGTCAACCTGTGGCTGTTGTGACACACCTGAGATACAGACAAGAGTCACATTGAGACAACCACAGCAGTGGGACACAAGACAACTCTCCACATTGCTTTGTTGTTTCCTCTTAGCTGAAACCATGGATATGACTACGGCCAAGACGACCGCAAgctttctctccactgtctccagCACCTCCATGAACCCCATTCTCACTGTTACAACGGACGCCAGGATGGAACATGAGATGGTCACAGAGTCCAGGACAAAACTCATGACCACTAGCATTACTATAACAACAACCAAtgagacaagcttcaatgccaccAAGCTGCCAGAGTTGGAGCTCGAGGGCTCTGAGATGGGCATGGTGTTGTTGCCCTTTGGCATCATCACTGTAATTGGCCTGACATTGGTCGTGATGCTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGATCCGGCAGAGGAACAGGATGACTTGGAACAGGAACTACTGGACCACAACCTCACAGGACCCAATAACAAGactctcaCGACCTCCCAGGGGACGACACAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGGTCTCAATGCATAACTACACTCTTAAAGACATGAGAGGGGACTGGGGGACATGGGGAGGGGACTAGCTATTCCGTCATTGAGATATGTTGCTCAGGAAAAAAAGGAAAACTGGAATGAAGGCCATGGAAACATACTGATGtctgggggatgtttttcaggctGGGCTATAAGGGAATTCTGATGTTTAAGTTGTAATGTAGTCATAGTTTAACTGTGAGGTTCTCCATCATTGTCATTAGTCCACATCGTTTACAGTTCTTAAATTGTCTCCAGTGACTATGGTGGGATATATGGGGAAATTAGGTGAACTTTATTGAACTAAGGATTTTGAACTGGTTGTTATTTGTTGCACAAATACTTCATGGGTTTTTGTTGGATCACTGTCTTTCTCTGTAGTTAAGTGATAGTGGTGGTAGAACTCCTACATCCATCTTCATTGAAAACTTAGTCTAGAATGTATTCATTTCCACATGTTCGTATTTTGCTGCTAAATGTAGACAACCACATTTGAGAAGAGCCTCCTCTAAAATGGTTATGCAAAAATGTTGACTTTTTACTGCTTCCATAATGGTGGTGGACTAGAGACTTGGAACAACAAGGGAATGGACATTCTACACATTGAAGAACTAAAACACGACATCAGGAGATCCGGAGGACAATGCCTGGGGTACTGTAACCCACCTAGTGTACATTACTGTACCCCTGTCCACACGTCCAAAATGTGTCTTTCAGCACTTCTGTCTCTATCGCCCCTTTGCCCTCAAAGTATTAGTATATTTCCTCTAAGTAATAAAGTATTAGTATACTTCCTCTAA
>XM_036950731.1
gatgggggagggagctTTTGATCACAGAGCTCTGTTTGCAGCATCCCTGGAGCAGCTACTGTTATCTAAAACATAAGGGCCAGGATAGGGGAACAGATCTAAAGAAGAGATAGACGGGGAATCCTCTGGAATCATCCAGGGGTCTGGTTGCTTTGTGTGGAGTGGAGCAGGAGGTGAGAAGAAGTGTTTTCCATGTAAACACCCCCTCAGAAGGGATAAGCGGAGgagcggtagagagaggaggaagggtagagataggaggggtagagagaggggaaacgTTCCTTCTCCCTAGGATATTACCCCTCTATCTGGCTACCTACTATggctcctttaaaaaaaatagtggTAATCCCATCACATCAAGGAAAGGTTCTGCCTGGAGAGTGTGTTCTGGTGTACTCAATGCATTCCCAATGCTTCAGCAGACCTCAGTCCAGAGAGAGTCAACCTGTGGCTGTTGTGACACACCTGAGATACAGACAAGAGTCACATTGAGACAACCACAGCAGTGGGACACAAGACAACTCTCCACATTGCTTTGTTGTTTCCTCTTAGCTGAAACCATGGATATGACTACGGCCAAGACGACCGCAAgctttctctccactgtctccagCACCTCCATGAACCCCATTCTCACTGTTACAACGGACGCCAGGATGGAACATGAGATGGTCACAGAGTCCAGGACAAAACTCATGACCACTAGCATTACTATAACAACAACCAAtgagacaagcttcaatgccaccAAGCTGCCAGAGTTGGAGCTCGAGGGCTCTGAGATGGGCATGGTGTTGTTGCCCTTTGGCATCATCACTGTAATTGGCCTGACATTGGTCGTGATGCTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGATCCGGCAGAGGAACAGGATGACTTGGAACAGGAACTACTGGACCACAACCTCACAGGACCCAATAACAAGactctcaCGACCTCCCAGGGGACGACACAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGGTCTCAATGCATAACTACACTCTTAAAGACATGAGAGGGGACTGGGGGACATGGGGAGGGGACTAGCTATTCCGTCATTGAGATATGTTGCTCAGGAAAAAAAGGAAAACTGGAATGAAGGCCATGGAAACATACTGATGtctgggggatgtttttcaggctGGGCTATAAGGGAATTCTGATGTTTAAGTTGTAATGTAGTCATAGTTTAACTGTGAGGTTCTCCATCATTGTCATTAGTCCACATCGTTTACAGTTCTTAAATTGTCTCCAGTGACTATGGTGGGATATATGGGGAAATTAGGTGAACTTTATTGAACTAAGGATTTTGAACTGGTTGTTATTTGTTGCACAAATACTTCATGGGTTTTTGTTGGATCACTGTCTTTCTCTGTAGTTAAGTGATAGTGGTGGTAGAACTCCTACATCCATCTTCATTGAAAACTTAGTCTAGAATGTATTCATTTCCACATGTTCGTATTTTGCTGCTAAATGTAGACAACCACATTTGAGAAGAGCCTCCTCTAAAATGGTTATGCAAAAATGTTGACTTTTTACTGCTTCCATAATGGTGGTGGACTAGAGACTTGGAACAACAAGGGAATGGACATTCTACACATTGAAGAACTAAAACACGACATCAGGAGATCCGGAGGACAATGCCTGGGGTACTGTAACCCACCTAGTGTACATTACTGTACCCCTGTCCACACGTCCAAAATGTGTCTTTCAGCACTTCTGTCTCTATCGCCCCTTTGCCCTCAAAGTATTAGTATATTTCCTCTAAGTAATAAAGTATTAGTATACTTCCTCTAA
>XM_036950732.1
gatgggggagggagctTTTGATCACAGAGCTCTGTTTGCAGCATCCCTGGAGCAGCTACTGTTATCTAAAACATAAGGGCCAGGATAGGGGAACAGATCTAAAGAAGAGATAGACGGGGAATCCTCTGGAATCATCCAGGGGTCTGGTTGCTTTGTGTGGAGTGGAGCAGGAGgtttcaagcagaccaccatagtccctgtgcccaagaacgcaaagGTTCTGCCTGGAGAGTGTGTTCTGGTGTACTCAATGCATTCCCAATGCTTCAGCAGACCTCAGTCCAGAGAGAGTCAACCTGTGGCTGTTGTGACACACCTGAGATACAGACAAGAGTCACATTGAGACAACCACAGCAGTGGGACACAAGACAACTCTCCACATTGCTTTGTTGTTTCCTCTTAGCTGAAACCATGGATATGACTACGGCCAAGACGACCGCAAgctttctctccactgtctccagCACCTCCATGAACCCCATTCTCACTGTTACAACGGACGCCAGGATGGAACATGAGATGGTCACAGAGTCCAGGACAAAACTCATGACCACTAGCATTACTATAACAACAACCAAtgagacaagcttcaatgccaccAAGCTGCCAGAGTTGGAGCTCGAGGGCTCTGAGATGGGCATGGTGTTGTTGCCCTTTGGCATCATCACTGTAATTGGCCTGACATTGGTCGTGATGCTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGATCCGGCAGAGGAACAGGATGACTTGGAACAGGAACTACTGGACCACAACCTCACAGGACCCAATAACAAGactctcaCGACCTCCCAGGGGACGACACAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGGTCTCAATGCATAACTACACTCTTAAAGACATGAGAGGGGACTGGGGGACATGGGGAGGGGACTAGCTATTCCGTCATTGAGATATGTTGCTCAGGAAAAAAAGGAAAACTGGAATGAAGGCCATGGAAACATACTGATGtctgggggatgtttttcaggctGGGCTATAAGGGAATTCTGATGTTTAAGTTGTAATGTAGTCATAGTTTAACTGTGAGGTTCTCCATCATTGTCATTAGTCCACATCGTTTACAGTTCTTAAATTGTCTCCAGTGACTATGGTGGGATATATGGGGAAATTAGGTGAACTTTATTGAACTAAGGATTTTGAACTGGTTGTTATTTGTTGCACAAATACTTCATGGGTTTTTGTTGGATCACTGTCTTTCTCTGTAGTTAAGTGATAGTGGTGGTAGAACTCCTACATCCATCTTCATTGAAAACTTAGTCTAGAATGTATTCATTTCCACATGTTCGTATTTTGCTGCTAAATGTAGACAACCACATTTGAGAAGAGCCTCCTCTAAAATGGTTATGCAAAAATGTTGACTTTTTACTGCTTCCATAATGGTGGTGGACTAGAGACTTGGAACAACAAGGGAATGGACATTCTACACATTGAAGAACTAAAACACGACATCAGGAGATCCGGAGGACAATGCCTGGGGTACTGTAACCCACCTAGTGTACATTACTGTACCCCTGTCCACACGTCCAAAATGTGTCTTTCAGCACTTCTGTCTCTATCGCCCCTTTGCCCTCAAAGTATTAGTATATTTCCTCTAAGTAATAAAGTATTAGTATACTTCCTCTAA
>XM_036950733.1
gatgggggagggagctTTTGATCACAGAGCTCTGTTTGCAGCATCCCTGGAGCAGCTACTGTTATCTAAAACATAAGGGCCAGGATAGGGGAACAGATCTAAAGAAGAGATAGACGGGGAATCCTCTGGAATCATCCAGGGGTCTGGTTGCTTTGTGTGGAGTGGAGCAGGAGGTTCTGCCTGGAGAGTGTGTTCTGGTGTACTCAATGCATTCCCAATGCTTCAGCAGACCTCAGTCCAGAGAGAGTCAACCTGTGGCTGTTGTGACACACCTGAGATACAGACAAGAGTCACATTGAGACAACCACAGCAGTGGGACACAAGACAACTCTCCACATTGCTTTGTTGTTTCCTCTTAGCTGAAACCATGGATATGACTACGGCCAAGACGACCGCAAgctttctctccactgtctccagCACCTCCATGAACCCCATTCTCACTGTTACAACGGACGCCAGGATGGAACATGAGATGGTCACAGAGTCCAGGACAAAACTCATGACCACTAGCATTACTATAACAACAACCAAtgagacaagcttcaatgccaccAAGCTGCCAGAGTTGGAGCTCGAGGGCTCTGAGATGGGCATGGTGTTGTTGCCCTTTGGCATCATCACTGTAATTGGCCTGACATTGGTCGTGATGCTGTATATCAGGAAACGGAAGAGACTGGAGAAGCTGAGGCACCAGCTGATGCCCATGTATAACTTTGATCCGGCAGAGGAACAGGATGACTTGGAACAGGAACTACTGGACCACAACCTCACAGGACCCAATAACAAGactctcaCGACCTCCCAGGGGACGACACAGAGGCCCAGTCGCCTGGTCTTCACAGACGTAGCCAACGGTCTCAATGCATAACTACACTCTTAAAGACATGAGAGGGGACTGGGGGACATGGGGAGGGGACTAGCTATTCCGTCATTGAGATATGTTGCTCAGGAAAAAAAGGAAAACTGGAATGAAGGCCATGGAAACATACTGATGtctgggggatgtttttcaggctGGGCTATAAGGGAATTCTGATGTTTAAGTTGTAATGTAGTCATAGTTTAACTGTGAGGTTCTCCATCATTGTCATTAGTCCACATCGTTTACAGTTCTTAAATTGTCTCCAGTGACTATGGTGGGATATATGGGGAAATTAGGTGAACTTTATTGAACTAAGGATTTTGAACTGGTTGTTATTTGTTGCACAAATACTTCATGGGTTTTTGTTGGATCACTGTCTTTCTCTGTAGTTAAGTGATAGTGGTGGTAGAACTCCTACATCCATCTTCATTGAAAACTTAGTCTAGAATGTATTCATTTCCACATGTTCGTATTTTGCTGCTAAATGTAGACAACCACATTTGAGAAGAGCCTCCTCTAAAATGGTTATGCAAAAATGTTGACTTTTTACTGCTTCCATAATGGTGGTGGACTAGAGACTTGGAACAACAAGGGAATGGACATTCTACACATTGAAGAACTAAAACACGACATCAGGAGATCCGGAGGACAATGCCTGGGGTACTGTAACCCACCTAGTGTACATTACTGTACCCCTGTCCACACGTCCAAAATGTGTCTTTCAGCACTTCTGTCTCTATCGCCCCTTTGCCCTCAAAGTATTAGTATATTTCCTCTAAGTAATAAAGTATTAGTATACTTCCTCTAA

Function

NR:

description
uncharacterized protein C3orf18 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950730.1 False 1915 mRNA 0.46 6 79884493 79891541
XM_036950731.1 False 1872 mRNA 0.46 5 79884493 79891542
XM_036950732.1 False 1717 mRNA 0.46 6 79884493 79891542
XM_036950733.1 True 1673 mRNA 0.45 5 79884493 79891542

Neighbor

gene id symbol gene type direction distance location
LOC110493269 LOC106566002 coding downstream 38752 79844410 ~ 79845741 (-)
hemk1 hemk1 coding downstream 525439 79355894 ~ 79359054 (-)
LOC110494647 glyctk coding downstream 554994 79323224 ~ 79329499 (-)
LOC110494645 LOC106565972 coding downstream 563482 79315200 ~ 79321011 (-)
LOC110494643 LOC106565970 coding downstream 586765 79292446 ~ 79297728 (-)
cenps apitd1 coding upstream 38958 79930500 ~ 79933811 (-)
LOC110494664 ret7 coding upstream 42324 79933866 ~ 79938222 (-)
h6pd LOC106565995 coding upstream 52718 79944260 ~ 79952863 (-)
si:ch73-15b2.5 LOC106566004 coding upstream 90400 79981942 ~ 79986165 (-)
LOC110494667 LOC106565993 coding upstream 98131 79989673 ~ 79998248 (-)
G1493962 NA non-coding downstream 21887 79861731 ~ 79862606 (-)
G1493960 NA non-coding downstream 27715 79854974 ~ 79856778 (-)
G1493959 NA non-coding downstream 29882 79854184 ~ 79854611 (-)
G1493922 NA non-coding downstream 40208 79839434 ~ 79844285 (-)
G1493850 NA non-coding downstream 219400 79659740 ~ 79665093 (-)
G1493978 LOC106565997 non-coding upstream 8463 79900005 ~ 79925268 (-)
G1494022 NA non-coding upstream 81630 79973172 ~ 79973436 (-)
G1494023 NA non-coding upstream 83737 79975279 ~ 79976035 (-)
G1494024 NA non-coding upstream 85042 79976584 ~ 79977750 (-)
G1494036 NA non-coding upstream 118554 80010096 ~ 80010325 (-)
G1493395 LOC106582800 other downstream 535104 79348231 ~ 79349389 (-)
G1492898 NA other downstream 1069064 78771571 ~ 78815429 (-)
G1492901 NA other downstream 1070538 78803860 ~ 78813955 (-)
G1492910 NA other downstream 1103098 78778352 ~ 78781395 (-)
G1492897 NA other downstream 1112539 78770740 ~ 78771954 (-)
G1494054 NA other upstream 180097 80071639 ~ 80087637 (-)
G1494870 NA other upstream 706452 80597994 ~ 80598532 (-)
G1494924 NA other upstream 800880 80692422 ~ 80694102 (-)
G1495003 NA other upstream 1003546 80895088 ~ 80895437 (-)
G1495113 NA other upstream 1174429 81065971 ~ 81066682 (-)

Expression


Co-expression Network