LOC110494661 (LOC105025424)


Basic Information

Item Value
gene id LOC110494661
gene name LOC105025424
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79900018 ~ 79925378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569926.2
GTTTGATTGCCGGGTGAAGTAGTGACTGAGTAGTACCGAGAAAGAGTTTAGGGCGGCCAAAGGGGAAGTTGCTTCTTAATGAAATATACATCGGGAACAGACAGTAGTGAAATTGATTATTGAGATTGTCAATAAGCCTACTTGCACTTTGCAGCAGGGATCTGTGTCCCGTCATCAGCAGGGAGTGGTGtgatttttacccccccccccggTTGGTCCAGGTTGTTGAAAAAGCTTACTGGCCAGCCTGGTTACGTTTGGGAAGGGTTGCTCCTCTGAAAGCTAGCTAGTTTGTAAACTAGCTGTTCGTTGATGCGTGGATTGgaggaataactacactgttaccTTTTCCAGTCAATGCTAAATAAACAAGCCAACGCCAACTGAGAAAAAGATTAACAACTGTCCCAGCAGCTGGAGCGAGACAGACCTACTAGCAGGGCAAAATGAGTGAACTGGACCAGTTACGCCAGGAGGCTGAGCAGCTCAAAAACCAGATCAGAGATGCCAGGAAAGCATGTGCAGATGCCACGCTATCACAGATCACAGCCAATATTGATCCTGTTGGCCGTATTCAGATGCGCACAAGAAGAACACTGAGGGGGCATTTGGCTAAGATCTATGCCATGCATTGGGGCACTGATTCCAGGCTCTTGGTCAGTGCTTCCCAAGATGGCAAACTCATCATTTGGGACAGCTATACCACTAACAAGGTCCATGCCATTCCTCTGCGTTCTTCCTGGGTCATGACCTGCTCATATGCACCTTCAGGAAACTACGTGGCATGTGGAGGTCTGGACAACATCTGCTCTATTTACAACCTGAAGACACGTGAGGGGAATGTACGTGTGAGCCGGGAGCTCGCTGGACACACGGGTTATCTGTCCTGCTGTCGCTTCGTTGATGACAACCAGATTATTACAAGCTCTGGAGACACCACCTGtgcccTTTGGGATATTGAGACTGGCCAGCAGACAACCACATTTGCTGGTCACAGTGGTGATGTCATGAGCCTCTCATTGGCCCCTGACACTAGGCTATTTGTCTCAGGTGCTTGTGATGCCTCGGCTAAACTCTGGGATGTCAGAGAGGGCATGTGCAGACAGACCTTCACTGGGCATGAGTCTGACATCAATGCCATATGTTTCTTCCCCAATGGCAATGCCTTTTGTACGGGCTCTGACGACGCCACCTGCAGACTCTTCGATCTTCGTGCCGACCAGGAGCTGATGTGCTACTCGCATGACAACATCATTTGTGGCATCACCTCTGTTGCTTTCTCCAAGAGTGGCCGTCTCCTCCTAGCTGGATATGACGACTTCAACTGCAACGTGTGGGACACACTGAAGGCTGACCGTGCTGGTGTGTTGGCTGGACATGACAACCGTGTTAGCTGCCTGGGAGTCACCGACGATGGCATGGCAGTTGCAACAGGATCCTGGGACAGTTTTCTCAAGATCTGGAATTGAAACCTGAAGATGTCATTTTGAACTCCAAAGTTGACTGGAAGACCATTACAACAACTTGAGAATGTTAAATTTCATAGCATCTTCTTCAACACCGTTTTAAACTGACTTGGACACCACAAACTAAGGGAAACCAATGCCTTTCCTACACAAGAAGAGCACAATTGTTTGTCAACTAGTTAAAAAGAAGAGTTCCTGTGGTATCAAATCAAAAACTTGTGCATTCCTTCTTGGACCCTTTTATGTTACCTTGAATGACAAAACACTATCATCCCATGCAAATGTATGTCTTGAAAGCAAATGTTTGAGCGTAATTGTACAAATTATTTAaactttctttttttaaagaattCTATTCTCTGATGGTTTGTTTTATTCAGTTGCTTTCGTTTGTCAGGTTCTTTTCAAATAAAGCTTGTCATATTAATCCAATTTAATCATGTAAGAAAGCTGAGACAAAATAAAACATGCAGAAAGCATGAAAGCAAAATATTGACCAGATTACAGGAGCCGCGTTCAGAAAACATCAATGATGTATTTATTTGCcagctatttttgtttcatcacggctttttttttttttttgtacaaaaATAAAATGTGCTTGAACTAATACTGTGTTAACTAAGCACATGCTATAAATTGTGATGAATGCTAATTTCAATACAGAAGTAGTTCATGAGTAACTTAATTTCAGTTAACCCCTTAACTCTGTCTTAATTGGGTGGAATAGGGGTTTAGGGTGGGTTTTGTGATTTGTTGGGGCTGGATTTAGTTTAATGGATGGGGATTTTTGTAAGTGTCCACTTAGTGAAAGACCACCTGACTAACAGACACCTTTCCTGTGCTTGAAACAGCAGTTGCTATTCTGTGAATGAAATGTACAAATCAATGTCTGAAAATAATTATCTGAAattttacattttgttttgtCTGCCATGGGTTAATTTAAGCATGCATGCTGTAGAATTGCTTTCCACGATGCAAAGATCCAAGTCATCTGTCTTGTTCGTAAGTTGTAACCGGTTAACTATTTTATTTTGGCTAAACACTGCATATGTACTTACACTGGCAAAGCTATGCACCAGAGTAATTGAAAGTGAAGAATGGATTTCCTATTGACTGCAGACTCCATGTGAAATATCATACCAGTTCTAATGATgccaattttttttaaaataattcaTAGTGAACCTTTTGATTAACCTCCTTTAAATGTTCACACCCAATGGAACAAAAACATGTTCTCTGATTTATGCCCTTactaattttgtatttttttttcttggTCTTAAGTCATAGCATCTGAATGGCAGAAGAAAACAATTCTCCACTGTACAGAAGCACTTTCTTTAATAGTTGACATTTTTCACTTTTTCTGTGATGTACAATACATGTGATCTATTTGTGTGTGGCCACAAGTAAAAATGAATTGCAATTCAATTGAGATGGGTTTCCGTTTCTCCTTCCATTGATAAAGATGGAGCTCTGCACCCTTTTcacattttttgtattttatttcaatattttgtcctgcgtttacacaggcagcccaattattGACACCtgttgatctgattggtcaaaagtccAAATAGTGAAAAAAAGTGTGTTCCACAGTGAGCTGGATCAAGATACTGTACTAAAATGTACTGTTattgaaaatgtaataaaaagCCGTTTGAGATGTCTTGTTCTTAACCTA

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569926.2 True 3171 mRNA 0.41 11 79900018 79925378

Neighbor

gene id symbol gene type direction distance location
LOC110494660 LOC106565999 coding upstream 17766 79874333 ~ 79882252 (+)
LOC110494656 LOC106566001 coding upstream 28855 79848482 ~ 79871163 (+)
LOC110493268 LOC106582605 coding upstream 55705 79547816 ~ 79844313 (+)
hyal1 LOC106565982 coding upstream 498133 79398640 ~ 79401885 (+)
LOC110494654 LOC106565981 coding upstream 506838 79389233 ~ 79393180 (+)
LOC110494662 LOC106565996 coding downstream 982 79926360 ~ 79930803 (+)
LOC110493270 LOC106565994 coding downstream 34483 79959861 ~ 79980095 (+)
LOC110495196 LOC106565991 coding downstream 89731 80015109 ~ 80017775 (+)
LOC110494679 LOC106565990 coding downstream 99712 80025090 ~ 80041751 (+)
LOC110494682 edem1 coding downstream 113348 80038726 ~ 80047063 (+)
G1493698 NA non-coding upstream 52293 79847235 ~ 79847725 (+)
G1493681 NA non-coding upstream 98747 79799970 ~ 79801271 (+)
G1493511 NA non-coding upstream 355070 79544446 ~ 79544948 (+)
G1493498 NA non-coding upstream 376722 79523024 ~ 79523296 (+)
G1493488 NA non-coding upstream 382213 79517297 ~ 79517805 (+)
G1493517 LOC106565995 non-coding downstream 17713 79943091 ~ 79950459 (+)
G1493733 NA non-coding downstream 47634 79973012 ~ 79973225 (+)
G1493734 NA non-coding downstream 48754 79974132 ~ 79974513 (+)
G1493740 LOC106565993 non-coding downstream 71261 79996639 ~ 79997179 (+)
tusc2 tusc2 other upstream 514581 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 563946 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1124291 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1646710 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1709728 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1368062 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1411639 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1506833 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1903354 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2237828 82163138 ~ 82169750 (+)

Expression


Co-expression Network