LOC110493270 (LOC106565994)


Basic Information

Item Value
gene id LOC110493270
gene name LOC106565994
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79959861 ~ 79980095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950738.1
AGCTCATCATGCCACCTGTTTTTCTATGGAACTTTCGGCTGAAACGAAGGGCGGTTGACACCGGTAGTGCTCACAGAAGTTCGGCGATATTACGAGATCAGATCAGAGAGGAATTGCcgtcaaaagttttaaaaaaaatggatttcCGTCGTGTTACTTTTGATTCTTTGTTTTTGTATGTATTTATTACCCATATATTTATTACTCTTCACGCGAAAGAACAGGTGCTGCTGGATATGAAAGCTTCGGGAGGCGAGTTGGGATGGTTGACCTGGCCATATGAAGAAGGGtggGAGATAGTCCAGACAGTGGTGAATGGCTCCCTCCTCTACACTTACAGTGTGTGTAACATCGACGCGGGTGAGCAGGACAACTGGCTCCGAACCACCTTCATCCAAGGACGCCCAGGGACCACCCGCGTCTCTGTGGAGCTGCACTTCGTTGTGCGGGACTGCAACACCTTCGACGGCACCTCGCTCGCCTGCAAAGAGACCTTCAACCTGCACATGTTCGAGGCCGATGCCGACGTGGGCACCAGCTTCCATAAGGGCCAGTTCCGCAAAGTGGCCACCATCGCGTCGGATGAAATCACGCGGGGCCGCGGTGTGCTGAAGGTAAACGTGGAGACACGGACAGTGGGCCCTCTATCCAGGAAGGGCTTCTACTTGGCCTTCCAGGACATGGGAGCGTGTGTGGCACTGCTCTCTGTGAGGGTGTACTACAAGACTTGTCCGTCCACCGTGCAGAGCCTGGCCGCCTTCCCAGAGACGGTAACAGATGCcctgagggaggtggagggaacATGTGTGCAGAACGCCGTGAGCCAGGCCACCCCACGCATCTACTGCACCGCTGAGGGAGAGTGGGTGGTGCCCGTGGGACAGTGCCAATGCCGCGGAGGCTATGAAGTTGTTGGAGACTCCTGCCAAGCGTGTACGCCAGGCTCCTTTAAAGACTCTGTGTCCAGTGAGTCCTGTGAGGTTTGTCCTGAGAATACTGAGCCATCCACAGCCGGCGCCCTCCTGTGTCCATGTATGGAGGGATTCTACCGCTCCCCATCAGACCCTCTTATGTCAGCCTGCTCTGCCCCACCCAGCGCCCCTCGTGACCTGGCCTCCACCACTCTGTCAGCGGACGGCAGGCTGCAGCTGTCCTGGAGCCCCCCACTGGTGACAGGAGGCCGCCGGGACATCTGCTACAGCGTGGTGTGTGAGCGCTGCACCGGGGCCCTGTGTGTGCCCTGTGGGGAGAAGGTCCGCTTCCAGCCCGACCCCACGGACCTCCAGGACACCATGGTGACTGTTAGCCAGTTGGAGCCCCACCTCAACTACACGTTCACTGTAGAGGCCCGCAGCGGAGTGTCTCAGTACAGCAGCCAGAGACCCAGCAGCACCATCACCACCGCTCTGCACTTCACTGATCCCCCCAAGGTGACGTCCATCCGTCTGGAGGAGCGGAGCCCCACCAGCCTGTCTCTGTCCTGGGCTCTGTCCAGCCGAGCACCATCCCATATCACCCACCGCTACGAACTCATGTACCGCAGGAAGGAGGACGACAGTGAGCGTGATGTCACCACATACACAGTCCTGGTTCTGGACAAGAGTACGGTGCAGATCAGTGACCTCTCCCCTGACACGGCCTACGTGTTCAGAGTTCAGGCTCTCAGCCCTGAGGGAAACCCAGGGGGATACAGCATGAAGCATGTGTTCAAAACCTTGCCCATTGAGTCTCAGGTCCAGAACTACACAGGGGTTATGGGAGctgtagtaggaggaggaatcATGCTGCTCGTCGTTGTAGTCCTTCTACTGCTGCACAAACGGAGAAAGAACTACCGTCATAGACAGGGATCAGAGGACCCCTACTTCTTCAGCACAGATCAACTGAAGCCCCTGAAGACCTACGTTGATCCACACATGTACGAGGACCCCAACACTGCTATCCTGAAGTTTGCCAGCGAGATTCATCCCAGTCTTGTCACTAAGCAAAAAGCCATCGGAGCAGGAGAGTTTGGGGAAGTGTACCGTGGTGTGATGAAGGctccaaggagaggagaggtagcggTAGCCATCAAGACATTGAAGCCAGGCTACACAGAGAAGCAGAAGCAGGATTTCCTTAGTGAAGCCAGCATCATGGGCCAGTTCTCCCACCAGAACATCATCCGCCTGGAGGGAGTCATCACCAAGTTCAAGCATGCCATGATTGTGACAGAATACATGGAGAATGGAGCGCTTGACAACTATCTAAAGGACCATGATGGGGAGATTTCCTCGTACCAGCTGGTGGGCATGCTGCGTGGCATCGCGGCCGGCATGAAGTACCTCTCTGACATGAGCTACGTGCACCGAGACCTGGCTGCCCGCAACGTTCTGGTCAACAGCAACCTGGAGTGCAAGGTGTCTGACTTCGGCCTGTCCCGCGTGCTGGAAGACGATCCTGAGGGCACCTACACCACCAGCGGAGGGAAGATCCCCATCCGCTGGACCGCCCCAGAGGCTATCGCCTACAGGAAGTTCACCTCGGCCAGCGACGTGTGGAGCTTCGGCATAGTCATGTGGGAAGTCATGGCCTTCGGAGAACGACCCTACTGGGACATGAGCAACCATGAGGTGATGAAGGCCATTAACGAGGCCTTCCGGCTGCCTGCACCCATGGACTGTCCATCCACCGTTTACCAGCTGATGCTGCAGTGTTGGCTGCAGGACCGCTCCAAACGACCTCGCTTCCCAGACATCGTCAACATCCTGGACAAACtgctccggagcccagaatctcTGAAAACCATTGCTTACTTTGATCCCCGTGTGTCCATCCGCCTCCCCAGCACCAGTGGCTGTGACGGCTCCCCCTTCAGGTCTGTGCCGGAATGGCTGGAGTCCATCAAGATGAGTCAGTACACTGAGAGCTTTGCCTGCGCTGGAATCACAACCATGGATCAGGTGCTATCCATGAGGCATGAGGACATCAGGAACATTGGCGTGCGGTTACCAGGTCACATGAAGAGAATCGCCTATAGCATCGTTGGACTTAAAGACCAGACCAGCTCACTCAGTGTTTGCAGTACAGTGTTTGCAGTGTGAGACCCCCAATTTGAGATTCCCCCAAAATAGGACTGCACTGACCACCTTATTCCACTGTCACATTGAATGGGGAAATGGAACAAGTTGGGTTGAACATGTAGTAATAATGGCTGAGCTATGCTGCTTTAGACTGGTCAGTGGCATGACTGAAGAGGACCTTGCCTGCCAGCCACTCAGAAAAGACGGGCACGTAAAACCATACAtgtcagtcctccatgacaagaGACCCTGAGAGATGTGGTTAAAGGAGAAGTAATGcatcatatataaatatattttcatattATCAAGTATGGAAATATGATGTCAGATAGGAAACGACAGGCTTTGGATGAAGCTGTATGAGACCTGAGACCTTTTTTCTCAACTGGAAGTCTGAAAAACAAGACATTCTAAGGCACTTCAGGACTGGGTCTACCTCCTCCTCAAGCACTCACCTATTCCTCTAGTCACTTCTGGACTTATTCGTTTCAGGAAGATTTGAGGCTTTGACGtaacagatagatagatgagaATGCCAATCTACTCAAATGACAGGTTTATTGGTCTTCTGAATTATTCCAGTCAGGTCAAGAAGTCAAAtactttttctttctttttgatTTTGTAGGTTCCATCCTGTCTGCAATCCACCTCATATACTTTTCTCTCATACATTTTGAAATAGTATTTTTCTTTAGTTTACAGTTCGTCTCCATCTACTCTTAGTGGTTCTTCCATtattatttaatatttatttcatatttattgtattttttaaattaatgacaCTACTCTGgcacgtttttagaaatgtagtTTTCTGTTTCAATAAAATCATTGTTTCCTTGTAGCAGAAAGGAAACATAGCAGAAAACAATATCAACTACTGTACATTGTAGTTATACTATTTATTCACTGGATTCTCAACATTGCTCACTGtaatatctactgctgtacatatcattctaggTATATATATTTTGTGTAAATATGCACAGATTGCATTAGGATTACTAATACAATGTCGTTTGGGTTCACTGGATTCGTTCTGATATTTATGATTTCTTGTTTCTGATTATTATTTGTGTGCTTGTTTGACTTTTTGCATTGTTAAGGAGCTAGAAACAAGCATTTCAGCACATGAAACATTTCCATTTGATAAAAAAATACAGGCAAGAAAAAAATGTTTGattgaaataaacatttttgggggTATTTCCTTGACAACCACCCTCAAGTTAGCGATAAGCACAGTCAGCTTCGATGTCAGTTAGTGACTACCATTGCAGTCTGGAATGTTccatctctactctactgtacttcaTCACATATGTATCATCTGTTACTGAGCCCCTGCTAAATTCTTTCTCGCGCTATCTCGGGCTCAATATTAATTCCTCTTCAATTAATTGTTCACTTGCAATTTTGAGTAGGACAGTAATTACAATGTCTCTAAATGTAATATTGACACatctatactgaataaaaatataaacgcaacatgtaatgtgTTAGTTCCATGATTCAAAAGCTGAAATAAgaaacaaaaagcttatttctctcaatgtgcacaaatttgtttacattcctgttagtgagcatttatcctttgtcaagataatccaaccactt
>XM_036950737.1
GCTCATCATGCCACCTGTTTTTCTATGGAACTTTCGGCTGAAACGAAGGGCGGTTGACACCGGTAGTGCTCACAGAAGTTCGGCGATATTACGAGATCAGATCAGAGAGGAATTGCcgtcaaaagttttaaaaaaaatggatttcCGTCGTGTTACTTTTGATTCTTTGTTTTTGTATGTATTTATTACCCATATATTTATTACTCTTCACGCGAAAGAACAGGTGCTGCTGGATATGAAAGCTTCGGGAGGCGAGTTGGGATGGTTGACCTGGCCATATGAAGAAGGGtggGAGATAGTCCAGACAGTGGTGAATGGCTCCCTCCTCTACACTTACAGTGTGTGTAACATCGACGCGGGTGAGCAGGACAACTGGCTCCGAACCACCTTCATCCAAGGACGCCCAGGGACCACCCGCGTCTCTGTGGAGCTGCACTTCGTTGTGCGGGACTGCAACACCTTCGACGGCACCTCGCTCGCCTGCAAAGAGACCTTCAACCTGCACATGTTCGAGGCCGATGCCGACGTGGGCACCAGCTTCCATAAGGGCCAGTTCCGCAAAGTGGCCACCATCGCGTCGGATGAAATCACGCGGGGCCGCGGTGTGCTGAAGGTAAACGTGGAGACACGGACAGTGGGCCCTCTATCCAGGAAGGGCTTCTACTTGGCCTTCCAGGACATGGGAGCGTGTGTGGCACTGCTCTCTGTGAGGGTGTACTACAAGACTTGTCCGTCCACCGTGCAGAGCCTGGCCGCCTTCCCAGAGACGGTAACAGATGCcctgagggaggtggagggaacATGTGTGCAGAACGCCGTGAGCCAGGCCACCCCACGCATCTACTGCACCGCTGAGGGAGAGTGGGTGGTGCCCGTGGGACAGTGCCAATGCCGCGGAGGCTATGAAGTTGTTGGAGACTCCTGCCAAGCGTGTACGCCAGGCTCCTTTAAAGACTCTGTGTCCAGTGAGTCCTGTGAGGTTTGTCCTGAGAATACTGAGCCATCCACAGCCGGCGCCCTCCTGTGTCCATGTATGGAGGGATTCTACCGCTCCCCATCAGACCCTCTTATGTCAGCCTGCTCTGCCCCACCCAGCGCCCCTCGTGACCTGGCCTCCACCACTCTGTCAGCGGACGGCAGGCTGCAGCTGTCCTGGAGCCCCCCACTGGTGACAGGAGGCCGCCGGGACATCTGCTACAGCGTGGTGTGTGAGCGCTGCACCGGGGCCCTGTGTGTGCCCTGTGGGGAGAAGGTCCGCTTCCAGCCCGACCCCACGGACCTCCAGGACACCATGGTGACTGTTAGCCAGTTGGAGCCCCACCTCAACTACACGTTCACTGTAGAGGCCCGCAGCGGAGTGTCTCAGTACAGCAGCCAGAGACCCAGCAGCACCATCACCACCGCTCTGCACTTCACTGATCCCCCCAAGGTGACGTCCATCCGTCTGGAGGAGCGGAGCCCCACCAGCCTGTCTCTGTCCTGGGCTCTGTCCAGCCGAGCACCATCCCATATCACCCACCGCTACGAACTCATGTACCGCAGGAAGGAGGACGACAGTGAGCGTGATGTCACCACATACACAGTCCTGGTTCTGGACAAGAGTACGGTGCAGATCAGTGACCTCTCCCCTGACACGGCCTACGTGTTCAGAGTTCAGGCTCTCAGCCCTGAGGGAAACCCAGGGGGATACAGCATGAAGCATGTGTTCAAAACCTTGCCCATTGCAGAGTCTCAGGTCCAGAACTACACAGGGGTTATGGGAGctgtagtaggaggaggaatcATGCTGCTCGTCGTTGTAGTCCTTCTACTGCTGCACAAACGGAGAAAGAACTACCGTCATAGACAGGGATCAGAGGACCCCTACTTCTTCAGCACAGATCAACTGAAGCCCCTGAAGACCTACGTTGATCCACACATGTACGAGGACCCCAACACTGCTATCCTGAAGTTTGCCAGCGAGATTCATCCCAGTCTTGTCACTAAGCAAAAAGCCATCGGAGCAGGAGAGTTTGGGGAAGTGTACCGTGGTGTGATGAAGGctccaaggagaggagaggtagcggTAGCCATCAAGACATTGAAGCCAGGCTACACAGAGAAGCAGAAGCAGGATTTCCTTAGTGAAGCCAGCATCATGGGCCAGTTCTCCCACCAGAACATCATCCGCCTGGAGGGAGTCATCACCAAGTTCAAGCATGCCATGATTGTGACAGAATACATGGAGAATGGAGCGCTTGACAACTATCTAAAGGACCATGATGGGGAGATTTCCTCGTACCAGCTGGTGGGCATGCTGCGTGGCATCGCGGCCGGCATGAAGTACCTCTCTGACATGAGCTACGTGCACCGAGACCTGGCTGCCCGCAACGTTCTGGTCAACAGCAACCTGGAGTGCAAGGTGTCTGACTTCGGCCTGTCCCGCGTGCTGGAAGACGATCCTGAGGGCACCTACACCACCAGCGGAGGGAAGATCCCCATCCGCTGGACCGCCCCAGAGGCTATCGCCTACAGGAAGTTCACCTCGGCCAGCGACGTGTGGAGCTTCGGCATAGTCATGTGGGAAGTCATGGCCTTCGGAGAACGACCCTACTGGGACATGAGCAACCATGAGGTGATGAAGGCCATTAACGAGGCCTTCCGGCTGCCTGCACCCATGGACTGTCCATCCACCGTTTACCAGCTGATGCTGCAGTGTTGGCTGCAGGACCGCTCCAAACGACCTCGCTTCCCAGACATCGTCAACATCCTGGACAAACtgctccggagcccagaatctcTGAAAACCATTGCTTACTTTGATCCCCGTGTGTCCATCCGCCTCCCCAGCACCAGTGGCTGTGACGGCTCCCCCTTCAGGTCTGTGCCGGAATGGCTGGAGTCCATCAAGATGAGTCAGTACACTGAGAGCTTTGCCTGCGCTGGAATCACAACCATGGATCAGGTGCTATCCATGAGGCATGAGGACATCAGGAACATTGGCGTGCGGTTACCAGGTCACATGAAGAGAATCGCCTATAGCATCGTTGGACTTAAAGACCAGACCAGCTCACTCAGTGTTTGCAGTACAGTGTTTGCAGTGTGAGACCCCCAATTTGAGATTCCCCCAAAATAGGACTGCACTGACCACCTTATTCCACTGTCACATTGAATGGGGAAATGGAACAAGTTGGGTTGAACATGTAGTAATAATGGCTGAGCTATGCTGCTTTAGACTGGTCAGTGGCATGACTGAAGAGGACCTTGCCTGCCAGCCACTCAGAAAAGACGGGCACGTAAAACCATACAtgtcagtcctccatgacaagaGACCCTGAGAGATGTGGTTAAAGGAGAAGTAATGcatcatatataaatatattttcatattATCAAGTATGGAAATATGATGTCAGATAGGAAACGACAGGCTTTGGATGAAGCTGTATGAGACCTGAGACCTTTTTTCTCAACTGGAAGTCTGAAAAACAAGACATTCTAAGGCACTTCAGGACTGGGTCTACCTCCTCCTCAAGCACTCACCTATTCCTCTAGTCACTTCTGGACTTATTCGTTTCAGGAAGATTTGAGGCTTTGACGtaacagatagatagatgagaATGCCAATCTACTCAAATGACAGGTTTATTGGTCTTCTGAATTATTCCAGTCAGGTCAAGAAGTCAAAtactttttctttctttttgatTTTGTAGGTTCCATCCTGTCTGCAATCCACCTCATATACTTTTCTCTCATACATTTTGAAATAGTATTTTTCTTTAGTTTACAGTTCGTCTCCATCTACTCTTAGTGGTTCTTCCATtattatttaatatttatttcatatttattgtattttttaaattaatgacaCTACTCTGgcacgtttttagaaatgtagtTTTCTGTTTCAATAAAATCATTGTTTCCTTGTAGCAGAAAGGAAACATAGCAGAAAACAATATCAACTACTGTACATTGTAGTTATACTATTTATTCACTGGATTCTCAACATTGCTCACTGtaatatctactgctgtacatatcattctaggTATATATATTTTGTGTAAATATGCACAGATTGCATTAGGATTACTAATACAATGTCGTTTGGGTTCACTGGATTCGTTCTGATATTTATGATTTCTTGTTTCTGATTATTATTTGTGTGCTTGTTTGACTTTTTGCATTGTTAAGGAGCTAGAAACAAGCATTTCAGCACATGAAACATTTCCATTTGATAAAAAAATACAGGCAAGAAAAAAATGTTTGattgaaataaacatttttgggggTATTTCCTTGACAACCACCCTCAAGTTAGCGATAAGCACAGTCAGCTTCGATGTCAGTTAGTGACTACCATTGCAGTCTGGAATGTTccatctctactctactgtacttcaTCACATATGTATCATCTGTTACTGAGCCCCTGCTAAATTCTTTCTCGCGCTATCTCGGGCTCAATATTAATTCCTCTTCAATTAATTGTTCACTTGCAATTTTGAGTAGGACAGTAATTACAATGTCTCTAAATGTAATATTGACACatctatactgaataaaaatataaacgcaacatgtaatgtgTTAGTTCCATGATTCAAAAGCTGAAATAAgaaacaaaaagcttatttctctcaatgtgcacaaatttgtttacattcctgttagtgagcatttatcctttgtcaagataatccaaccactt
>TU1707667
GCTAGAAACAAGCATTTCAGCACATGAAACATTTCCATTTGATAAAAAAATACAGGCAAGAAAAAAATGTTTGattgaaataaacatttttgggggTATTTCCTTGACAACCACCCTCAAGTTAGCGATAAGCACAGTCAGCTTCGATGTCAGTTAGTGACTACCATTGCAGTCTGGAATGTTccatctctactctactgtacttcaTCACATATGTATCATCTGTTACTGAGCCCCTGCTAAATTCTTTCTCGCGCTATCTCGGGCTCAATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950738.1 False 4697 mRNA 0.49 15 79959861 79980095
XM_036950737.1 False 4699 mRNA 0.49 15 79959862 79980095
TU1707667 True 275 lncRNA 0.39 1 79979581 79979855

Neighbor

gene id symbol gene type direction distance location
LOC110494662 LOC106565996 coding upstream 29058 79926360 ~ 79930803 (+)
LOC110494661 LOC105025424 coding upstream 34483 79900018 ~ 79925378 (+)
LOC110494660 LOC106565999 coding upstream 77609 79874333 ~ 79882252 (+)
LOC110494656 LOC106566001 coding upstream 88698 79848482 ~ 79871163 (+)
LOC110493268 LOC106582605 coding upstream 115548 79547816 ~ 79844313 (+)
LOC110495196 LOC106565991 coding downstream 35014 80015109 ~ 80017775 (+)
LOC110494679 LOC106565990 coding downstream 44995 80025090 ~ 80041751 (+)
LOC110494682 edem1 coding downstream 58631 80038726 ~ 80047063 (+)
LOC118940652 NA coding downstream 306850 80286945 ~ 80286998 (+)
trnak-cuu-20 NA coding downstream 443783 80423878 ~ 80423950 (+)
G1493517 LOC106565995 non-coding upstream 9402 79943091 ~ 79950459 (+)
G1493698 NA non-coding upstream 112136 79847235 ~ 79847725 (+)
G1493681 NA non-coding upstream 158590 79799970 ~ 79801271 (+)
G1493511 NA non-coding upstream 414913 79544446 ~ 79544948 (+)
G1493498 NA non-coding upstream 436565 79523024 ~ 79523296 (+)
G1493740 LOC106565993 non-coding downstream 16544 79996639 ~ 79997179 (+)
G1493744 NA non-coding downstream 20167 80000262 ~ 80000478 (+)
G1493756 NA non-coding downstream 38468 80018563 ~ 80018788 (+)
G1493767 NA non-coding downstream 85010 80065105 ~ 80073213 (+)
G1494061 NA non-coding downstream 114794 80094889 ~ 80095135 (+)
tusc2 tusc2 other upstream 574424 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 623789 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1184134 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1706553 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1769571 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1313345 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1356922 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1452116 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1848637 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2183111 82163138 ~ 82169750 (+)
G1493734 NA non-coding upstream 5068 79974132 ~ 79974513 (+)
G1493733 NA non-coding upstream 6356 79973012 ~ 79973225 (+)

Expression


Co-expression Network