LOC110495196 (LOC106565991)


Basic Information

Item Value
gene id LOC110495196
gene name LOC106565991
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80015109 ~ 80017775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570511.2
GGGGATAACTAAAGAGGAACAGGAAATCTTAAACGTGCACATGGCACAGCTGAACTACACCACATATGTCACCTGAGCTGTAGATCATATATAAGTGAGGTTTCAACATCATAGTGGTTTTCATATAGTATTAAATCCCCCCCTGTACAGGTTCACAGACAGCCGTGCTCTTTTCTATAGCGAAAGTTATATGATGATCCTGTCTGGATTTTGGGTGCTCATCTATTTATGTGTATTCGCTTGTAAAGGATTTTTAAATGCAGTGGAGGCAACTTTCGAATGCAAAAAAGGTGAGATGATAAGTAGACGGAAAGGAAGATTTTGTGACCCATGCCCTGAAAGGCAATACCAGGCAGGACCAAATCGCTCTCAGCAATGTCAACCCTGCACCGACTGCATTGAGAACAGTGAATTGATATCAGAGTGCACGAAGACTTCCAATGCTATATGTCAGTGTCGTACAGGATTCATTAGAAGGAACAATGAGTCTTCGTTATGCAAGTGTGCCAAGGGGTCTGAGCTGGATACATCAGGATTAATATGCCGTGAATGTAAGGAGGGATCCTTTTCCACCAAAATGGACTCTAAATGTGTGAAATGGCGAGAGTGTAGGAGTGGAGTGAGGATTCCGGGCAGTGTGTCATCAGATGTGACCTGTAATGAGAATTCAGAGCCAGAGGGGAAGAccctctcctccacacacaccactTCCCCATCTGGCTCCATCCAGACCTTTTCTAAGTCATTGATCCAGAGCCAAAGGTCATCCCCTCATCCTGATGTCCCCACCTTAACACCAGCCCCCACTATCAAGGTGACCAAAAGTCCCAAGTTCTCAACGGCAGACTTTGGCCAAGTAATGACACTCGTGGGAATTGTCCTGCTGCTTACTTTTCTACTGACCACTGTGACCTGCAAACTGATCACCATTCCTTGCATCAAGAACCACAAGAAGCTAGCTGTCAGAAAATCTCAGGACTCAATGTGCCGGAGGCCAGTTGAAGAAAGTGGAGACAGCAGTTTCTCTTCCCTGGTAAAACAACCAAGTTTGGGGGAGCCATGATAGAGATACCTGGCTCTCTGTCTGTCAAACAATTCATATTGTCAAAATGTTGCTGTTATTCCCAATGCTACTCCTTTAAACCAGAAACAACTTTAAACAGTTTTCAACATTTTTAAAATATTGTCAATATTTGTTTATCATGTATTCTGTTATTATGGAAAAGCATTTTAGACATTACTTTGTTTTCAATCTATTTGTCAACAATAGCATTATTCTTGGCTGAGCTGGGGGATCtagatattattttattttcacaaATGGGCGTCTGACAAAATAATGATAAATACTACTTCCTGTTCCTTCAGGTGTCTGGTAAGATTTACAGGGGAGATTATGTGAAAACAATGCTATGGTGGCAAAATAATGTGGCAACATTTTGTAAAATGTGTATTGTGTTAA

Function

NR:

description
tumor necrosis factor receptor superfamily member 10C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570511.2 True 1462 mRNA 0.42 7 80015109 80017775

Neighbor

gene id symbol gene type direction distance location
LOC110493270 LOC106565994 coding upstream 35014 79959861 ~ 79980095 (+)
LOC110494662 LOC106565996 coding upstream 84306 79926360 ~ 79930803 (+)
LOC110494661 LOC105025424 coding upstream 89731 79900018 ~ 79925378 (+)
LOC110494660 LOC106565999 coding upstream 132857 79874333 ~ 79882252 (+)
LOC110494656 LOC106566001 coding upstream 143946 79848482 ~ 79871163 (+)
LOC110494679 LOC106565990 coding downstream 7315 80025090 ~ 80041751 (+)
LOC110494682 edem1 coding downstream 20951 80038726 ~ 80047063 (+)
LOC118940652 NA coding downstream 269170 80286945 ~ 80286998 (+)
trnak-cuu-20 NA coding downstream 406103 80423878 ~ 80423950 (+)
trnak-cuu-21 NA coding downstream 407085 80424860 ~ 80424932 (+)
G1493744 NA non-coding upstream 14631 80000262 ~ 80000478 (+)
G1493740 LOC106565993 non-coding upstream 17930 79996639 ~ 79997179 (+)
G1493734 NA non-coding upstream 40596 79974132 ~ 79974513 (+)
G1493733 NA non-coding upstream 41884 79973012 ~ 79973225 (+)
G1493756 NA non-coding downstream 788 80018563 ~ 80018788 (+)
G1493767 NA non-coding downstream 47330 80065105 ~ 80073213 (+)
G1494061 NA non-coding downstream 77114 80094889 ~ 80095135 (+)
G1494064 NA non-coding downstream 78376 80096151 ~ 80096441 (+)
G1494066 NA non-coding downstream 79454 80097229 ~ 80097768 (+)
tusc2 tusc2 other upstream 629672 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 679037 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1239382 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1761801 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1824819 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1275665 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1319242 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1414436 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1810957 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2145431 82163138 ~ 82169750 (+)

Expression


Co-expression Network