LOC110494679 (LOC106565990)


Basic Information

Item Value
gene id LOC110494679
gene name LOC106565990
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80025090 ~ 80041751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569964.2
TTTCCTTTTCTATTTCTTAAGAGTAATAATAATACTCATGTAAATTACTGATAAGAACATTAACTGTTCTCTCAGCTATGACAAAAACATGTAGAGGCATCTTCTAATTCCTGATATTACTTTCTTTTTTTAACAAGATTTGAACAAATGAAATCAATGCAATCAATGTCAAAGGATAGAAAGAAACTATCAAAATTGAGCATAGTAAAGGGCGCAAGGAAGGAAGAGTGGACCCTGGACAGAAGTAGAAcagtgggagaatctcaatttcTTCCTTGCATCCTCTCCTTGCCTCCTAAACCCATTTGAGGATAATGTCAGAAGGCGGGActtctggctttctcatccaatgggttttgagaaggagggaATACTGAGGACGCGACGAGAATATAATTGAGATTCACCCAGTGACCGCATATGAAGGGACAAAAGAAAGGAAGCGAGTATTCGTTTCTTGAAGCGTCCATTGTGCGCGGTCACAAGTCATATGACAGCACTAAGCATTTCCTCTACACTTGTGCGAACGCCACAACACTGGTCGTTTTCTGTCGAAGTTGAGTGGTAATATCAATTTCAAGATGCTGGCACTCATAAACCGGCTTTTGGACTGGTTCAAGTCCCTCTTTTGGAAAGAGGAGATGGAGTTGACTCTGGTTGGACTTCAACACTCGGGGAAAACCACATTTGTTAACGTTATAGCTTCTGGGCATTTTAGTGAAGACATGATCCCTACAGTTGGATTCAACATGAGGAAGATCAAAAAAGGCAACGTTAACATCAAGATCTGGGATATAGGAGGGCAGCCGAGGTTCAGGAGCATGTGGGAACGTTACTGTCGGGGAGTTAACGCAATTGTATACATGGTGGATGCAGCTGACCGTGAGAAGGTGGAGGCTTCCAGGAATGAGCTGCACAATTTGTTAGACAAGCCTCAGTTGCAAGGAATTCCTATTTTGGTTCTTGGCAACAAAAGAGATATCCCCAGTGCGCTAGACGAGAAGCAGCTCATTGAAAACATGAACTTGGCAGCTATTCAAGACAGAGAGATTTGCTGCTACTCTATTTCCTgcaaagagagagacaacatagATATCACACTGCAGTGGCTCATCCAACAATCAAAATCTGGGAGAAGCTGAAAGTACAGGAACTCTGTCCTCCCAGCGCCATCTTCCATGTTACCCTCATGCCACACCCTGTTCACTCTCTGTTCACACATGTACAGTGTTCCCACCAACTCCGATGCTGCACTGTGCCCCCTGCCCGTTCCTCCCTGTTGTTCTAATTTTATCCAATGATTCTCCCCCACAAACCCCCATACCTCTGCACTACTAAAAGATGGTAGCCCCTGGTCAATGCCAAATACCACATCCCATGAGTCACAGAATGGGCATTACACCTCTGCCATGAGGTGCTACTTCAGTCTCTTGAACAGAGAGAGGTTTAGTCTGTCAGCCTTTTTCATTCTATGGGCTGAACGACAGGCGTTTCCCACACCTGTAAGTCCTGTTTATAACTCTAGTGTAGCGATCCTACACCCTCAGGGTGGGTTGTTTAGCCACTGACTGGGGCCTCATCATTATACATGTTCTCCAGACAGTCCTGTGTGAAGCTATAGGGAAAATAagacacactacatgaccaaaagtatgtggacacctgctcgttgaacatctcattccaaaatcatgggcattaatatggagttggtccctcctaggcctggctcacagtcggctgTCCTATTAATCaaaaaaggtgtttgatggggttgaggtcagggct
>XR_002469304.2
TTTCCTTTTCTATTTCTTAAGAGTAATAATAATACTCATGTAAATTACTGATAAGAACATTAACTGTTCTCTCAGCTATGACAAAAACATGTAGAGGCATCTTCTAATTCCTGATATTACTTTCTTTTTTTAACAAGATTTGAACAAATGAAATCAATGCAATCAATGTCAAAGGATAGAAAGAAACTATCAAAATTGAGCATAGTAAAGGGCGCAAGGAAGGAAGAGTGGACCCTGGACAGAAGTAGAAcagtgggagaatctcaatttcTTCCTTGCATCCTCTCCTTGCCTCCTAAACCCATTTGAGGATAATGTCAGAAGGCGGGActtctggctttctcatccaatgggttttgagaaggagggaATACTGAGGACGCGACGAGAATATAATTGAGATTCACCCAGTGACCGCATATGAAGGGACAAAAGAAAGGAAGCGAGTATTCGTTTCTTGAAGCGTCCATTGTGCGCGGTCACAAGTCATATGACAGCACTAAGCATTTCCTCTACACTTGTGCGAACGCCACAACACTGGTCGTTTTCTGTCGAAGTTGAGTGGTAATATCAATTTCAAGATGCTGGCACTCATAAACCGGCTTTTGGACTGGTTCAAGTCCCTCTTTTGGAAAGAGGAGATGGAGTTGACTCTGGTTGGACTTCAACACTCGGGGAAAACCACATTTGTTAACGTTATAGCTTCTGGGCATTTTAGTGAAGACATGATCCCTACAGTTGGATTCAACATGAGGAAGATCAAAAAAGGCAACGTTAACATCAAGATCTGGGATATAGGAGGGCAGCCGAGGTTCAGGAGCATGTGGGAACGTTACTGTCGGGGAGTTAACGCAATTGTATACATGGTGGATGCAGCTGACCGTGAGAAGGTGGAGGCTTCCAGGAATGAGCTGCACAATTTGTTAGACAAGCCTCAGTTGCAAGGAATTCCTATTTTGGTTCTTGGCAACAAAAGAGATATCCCCAGTGCGCTAGACGAGAAGCAGCTCATTGAAAACATGAACTTGGCAGCTATTCAAGACAGAGAGATTTGCTGCTACTCTATTTCCTgcaaagagagagacaacatagATATCACACTGCAGTGGCTCATCCAACAATCAAAATCTGGGAGAAGCTGAAAATCAAACATCAACATCAATGATGTCTTGGGAAACTATTAATTGACACCCTAGACACACTACTGGATCCCGGGTAGTCTCATCTCTGCTCACATCCTCCTGACTGACTCCAAGCATCCCTTCGGTGACGTGGGCATGGACGATTATGACAATGAGCTACTACACCTGGCCCACGACCTGGCAGTCCGCTTGCTGCCAGCC

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 8B-A isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569964.2 False 1788 mRNA 0.45 7 80025090 80038140
XR_002469304.2 True 1343 mRNA 0.44 9 80025090 80041751

Neighbor

gene id symbol gene type direction distance location
LOC110495196 LOC106565991 coding upstream 7315 80015109 ~ 80017775 (+)
LOC110493270 LOC106565994 coding upstream 44995 79959861 ~ 79980095 (+)
LOC110494662 LOC106565996 coding upstream 94287 79926360 ~ 79930803 (+)
LOC110494661 LOC105025424 coding upstream 99712 79900018 ~ 79925378 (+)
LOC110494660 LOC106565999 coding upstream 142838 79874333 ~ 79882252 (+)
LOC118940652 NA coding downstream 245194 80286945 ~ 80286998 (+)
trnak-cuu-20 NA coding downstream 382127 80423878 ~ 80423950 (+)
trnak-cuu-21 NA coding downstream 383109 80424860 ~ 80424932 (+)
trnak-cuu-22 NA coding downstream 384090 80425841 ~ 80425913 (+)
trnak-cuu-23 NA coding downstream 385865 80427616 ~ 80427688 (+)
G1493756 NA non-coding upstream 6302 80018563 ~ 80018788 (+)
G1493744 NA non-coding upstream 24612 80000262 ~ 80000478 (+)
G1493740 LOC106565993 non-coding upstream 27911 79996639 ~ 79997179 (+)
G1493734 NA non-coding upstream 50577 79974132 ~ 79974513 (+)
G1493767 NA non-coding downstream 23354 80065105 ~ 80073213 (+)
G1494061 NA non-coding downstream 53138 80094889 ~ 80095135 (+)
G1494064 NA non-coding downstream 54400 80096151 ~ 80096441 (+)
G1494066 NA non-coding downstream 55478 80097229 ~ 80097768 (+)
G1494065 LOC106565988 non-coding downstream 56890 80098641 ~ 80101348 (+)
tusc2 tusc2 other upstream 639653 79382417 ~ 79387551 (+)
LOC110493267 LOC106565976 other upstream 689018 79321093 ~ 79336076 (+)
G1492310 NA other upstream 1249363 78770747 ~ 78775727 (+)
G1492003 NA other upstream 1771782 78252629 ~ 78253308 (+)
G1491963 NA other upstream 1834800 78189012 ~ 78190290 (+)
G1495346 NA other downstream 1251689 81293440 ~ 81293926 (+)
G1495362 NA other downstream 1295266 81337017 ~ 81338163 (+)
LOC110494696 LOC106582736 other downstream 1390460 81432188 ~ 81602161 (+)
LOC110494698 LOC106566043 other downstream 1786981 81828571 ~ 81847540 (+)
G1496351 LOC106566032 other downstream 2121455 82163138 ~ 82169750 (+)

Expression


Co-expression Network